Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0005069

Physical Location & Seq

Genomic Coordinates Forward (+)

4054515 .. 4055399

Gene Structure 885 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g04730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGATCTATCACATTATTATTAACGCCATCACAAACTTCACAACAAACATCCTAGATTCCCGATCGATACCAACCAACTTTGTAAGCTCTCTGACGGACGTCTTGGATTGGATCCTTCCAATGAAGTTGCCTTGTCTCTTCAAAAAGAAGGAAACAAAAACGATAGCAGCCACATCGGCAGCGCCATGGCAGTACTGGCCCTCTTGCAACCACCCCAAGACGCTTTCCTTCCGAGCCCGCAGTGGCAGTGACAACATGTTCAAGACTGTCAACTCCGCCTTCTTGGATCCAGTTACGGAAGGAGGAGCTGATCAGTCTTGGTTCATAAACTCATCCTCCTCCTCAGATAATCAGTCAACAACCGGGTGTCATCATGAGGACGGAGAGGAGTCCTTGGATACGGTGGTGGTCCGAGGGGCAAGATCCGAGAGGCTGTTTTTCAAGCCGGAAGACACGAGCTCCATGGTACAAAAGGCGAAAGGCACCGGCGGAGGAGAGATGATGAATCCGTTGTTGAAGGAAAAGTACGTGCCGGTGTTAGCCAACATGGAATCGGAGGATCCGTTGAAAGATTTTAGGAGGTCAATGGAGGAGATGGTGGAATGTCATGGGCTTAGTAAAGATTGGGAGGGTTTGGAGGAGCTGTTGGGATGGTATTTGAAGGTCAACCAGAAGAACAACCATGGCTTTATAGTGGCAGCATTTGTGGATCTCCTTCTTGCTCTTTCTGCTGCTGCAGCTGCTCCTTCTGATCATAATTATTATTATTCCACTTCTTTTTCTTCTGCCATTTCTTCTTTTTCAAGATCTTCTCCATTGTCATGTTCTTTTCAAGGTCAGGAGGAGGATGACAGTGCAGAACCAGTAGAGATCACAATGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ovate

Protein Analysis

295

Amino Acids

32.6

Weight (kDa)

4.98

Isoelectric Point (pI)

54.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ovate	PF04844	185 - 242	5.2e-24	Transcriptional repressor, ovate

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04820
fragaria_vesca	FvH4_6g19870
malus_domestica	MD02G1258900.v1.1 MD07G1061800.v1.1 MD07G1061900.v1.1 MD12G1034200.v1.1 MD14G1035600.v1.1
prunus_persica	Prupe.2G071500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1
pyrus_communis	pycom07g04730 pycom12g03170 pycom14g03130
rosa_chinensis	RchiOBHm_Chr3g0475291
rosa_laevigata	RLG00000023854
rosa_multiflora	Rmu_ssc0000140.1_g000002
rosa_roxburghii	Rroxscaffold_6G00406410
rosa_rugosa	Rorug03G0147700
rosa_samantha	Rh3AG197700 Rh3BG228000 Rh3DG223200
rosa_wichuraiana	Rw3G017970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	102
AccB1I	GGYRCC	1 cut(s)	482
AciI	CCGC	3 cut(s)	238, 276, 489
AclWI	GGATC	8 cut(s)	106, 119, 281, 294, 417, 554, 567, 717
AcyI	GRCGYC	1 cut(s)	99
AfaI	GTAC	3 cut(s)	194, 468, 527
AflIII	ACRYGT	1 cut(s)	255
AgsI	TTSAA	8 cut(s)	142, 262, 442, 517, 568, 661, 804, 833
AluBI	AGCT	5 cut(s)	87, 308, 459, 643, 740
AluI	AGCT	5 cut(s)	87, 308, 459, 643, 740
Alw21I	GWGCWC	1 cut(s)	461
Alw26I	GTCTC	1 cut(s)	140
AlwI	GGATC	8 cut(s)	106, 119, 281, 294, 417, 554, 567, 717
AoxI	GGCC	1 cut(s)	197
ApeKI	GCWGC	7 cut(s)	167, 179, 698, 731, 734, 737, 740
AspLEI	GCGC	1 cut(s)	184
AspS9I	GGNCC	2 cut(s)	198, 409
AsuC2I	CCSGG	1 cut(s)	364
AvaII	GGWCC	1 cut(s)	409
BaeI	ACNNNNGTAYC	2 cut(s)	390, 423
BamHI	GGATCC	3 cut(s)	111, 286, 559
BanI	GGYRCC	1 cut(s)	482
BanII	GRGCYC	2 cut(s)	238, 461
BarI	GAAGNNNNNNTAC	2 cut(s)	509, 541
BauI	CACGAG	1 cut(s)	454
BbsI	GAAGAC	1 cut(s)	456
Bbv12I	GWGCWC	1 cut(s)	461
BbvI	GCAGC	7 cut(s)	179, 191, 710, 718, 721, 727, 749
BccI	CCATC	3 cut(s)	35, 589, 645
BcgI	CGANNNNNNTGC	2 cut(s)	156, 190
BciVI	GTATCC	1 cut(s)	391
BclI	TGATCA	2 cut(s)	310, 751
BcnI	CCSGG	1 cut(s)	364
BcoDI	GTCTC	1 cut(s)	140
BfaI	CTAG	1 cut(s)	53
BfmI	CTRYAG	1 cut(s)	735
BfoI	RGCGCY	1 cut(s)	185
BfuI	GTATCC	1 cut(s)	391
BglI	GCCNNNNNGGC	1 cut(s)	176
BglII	AGATCT	1 cut(s)	806
BisI	GCNGC	7 cut(s)	168, 180, 699, 732, 735, 738, 741
BlsI	GCNGC	7 cut(s)	169, 181, 700, 733, 736, 739, 742
BmcAI	AGTACT	1 cut(s)	194
Bme1390I	CCNGG	1 cut(s)	364
Bme18I	GGWCC	1 cut(s)	409
BmgT120I	GGNCC	2 cut(s)	198, 409
BmiI	GGNNCC	4 cut(s)	113, 288, 484, 561
BmrFI	CCNGG	1 cut(s)	364
BoxI	GACNNNNGTC	1 cut(s)	98
BpiI	GAAGAC	1 cut(s)	456
BpuMI	CCSGG	1 cut(s)	364
Bsa29I	ATCGAT	1 cut(s)	65
BsaAI	YACGTR	1 cut(s)	529
BsaHI	GRCGYC	1 cut(s)	99
BsaJI	CCNNGG	5 cut(s)	185, 393, 412, 462, 682
BsaXI	ACNNNNNCTCC	8 cut(s)	320, 350, 443, 473, 548, 578, 629, 659
Bse118I	RCCGGY	2 cut(s)	485, 532
Bse1I	ACTGG	3 cut(s)	200, 290, 863
BseCI	ATCGAT	1 cut(s)	65
BseDI	CCNNGG	5 cut(s)	185, 393, 412, 462, 682
BseGI	GGATG	4 cut(s)	48, 332, 656, 853
BseMII	CTCAG	1 cut(s)	357
BseNI	ACTGG	3 cut(s)	200, 290, 863
BseRI	GAGGAG	8 cut(s)	318, 328, 331, 401, 507, 605, 653, 857
BseXI	GCAGC	7 cut(s)	179, 191, 710, 718, 721, 727, 749
BsgI	GTGCAG	1 cut(s)	876
Bsh1285I	CGRYCG	1 cut(s)	65
BshFI	GGCC	1 cut(s)	199
BshNI	GGYRCC	1 cut(s)	482
BshVI	ATCGAT	1 cut(s)	65
BsiEI	CGRYCG	1 cut(s)	65
BsiHKAI	GWGCWC	1 cut(s)	461
BsiSI	CCGG	4 cut(s)	363, 446, 486, 533
BsmAI	GTCTC	1 cut(s)	140
BsnI	GGCC	1 cut(s)	199
Bsp1286I	GDGCHC	2 cut(s)	238, 461
Bsp19I	CCATGG	3 cut(s)	185, 462, 682
BspACI	CCGC	3 cut(s)	238, 276, 489
BspANI	GGCC	1 cut(s)	199
BspCNI	CTCAG	1 cut(s)	356
BspDI	ATCGAT	1 cut(s)	65
BspHI	TCATGA	1 cut(s)	373
BspLI	GGNNCC	4 cut(s)	113, 288, 484, 561
BspMAI	CTGCAG	1 cut(s)	739
BspPI	GGATC	8 cut(s)	106, 119, 281, 294, 417, 554, 567, 717
BspT107I	GGYRCC	1 cut(s)	482
BsrFI	RCCGGY	2 cut(s)	485, 532
BsrI	ACTGG	3 cut(s)	200, 290, 863
BssAI	RCCGGY	2 cut(s)	485, 532
BssECI	CCNNGG	5 cut(s)	185, 393, 412, 462, 682
BssNI	GRCGYC	1 cut(s)	99
BssSI	CACGAG	1 cut(s)	454
BssT1I	CCWWGG	4 cut(s)	185, 393, 462, 682
Bst2BI	CACGAG	1 cut(s)	454
Bst4CI	ACNGT	3 cut(s)	268, 403, 854
Bst6I	CTCTTC	1 cut(s)	143
BstACI	GRCGYC	1 cut(s)	99
BstBAI	YACGTR	1 cut(s)	529
BstC8I	GCNNGC	1 cut(s)	238
BstDEI	CTNAG	3 cut(s)	343, 614, 882
BstDSI	CCRYGG	3 cut(s)	185, 462, 682
BstF5I	GGATG	4 cut(s)	48, 332, 656, 853
BstH2I	RGCGCY	1 cut(s)	185
BstHHI	GCGC	1 cut(s)	184
BstMAI	GTCTC	1 cut(s)	140
BstMCI	CGRYCG	1 cut(s)	65
BstMWI	GCNNNNNNNGC	5 cut(s)	176, 196, 728, 737, 740
BstNSI	RCATGY	1 cut(s)	259
BstPAI	GACNNNNGTC	1 cut(s)	98
BstSCI	CCNGG	1 cut(s)	362
BstSFI	CTRYAG	1 cut(s)	735
BstV1I	GCAGC	7 cut(s)	179, 191, 710, 718, 721, 727, 749
BstV2I	GAAGAC	1 cut(s)	456
BstX2I	RGATCY	6 cut(s)	111, 286, 422, 559, 709, 806
BstYI	RGATCY	6 cut(s)	111, 286, 422, 559, 709, 806
Bsu15I	ATCGAT	1 cut(s)	65
BsuI	GTATCC	1 cut(s)	391
BsuRI	GGCC	1 cut(s)	199
BsuTUI	ATCGAT	1 cut(s)	65
BtgI	CCRYGG	3 cut(s)	185, 462, 682
BtsCI	GGATG	4 cut(s)	48, 332, 656, 853
BtsI	GCAGTG	2 cut(s)	247, 253
BtsIMutI	CAGTG	3 cut(s)	247, 253, 859
Cac8I	GCNNGC	1 cut(s)	238
CciI	TCATGA	1 cut(s)	373
CfoI	GCGC	1 cut(s)	184
Cfr10I	RCCGGY	2 cut(s)	485, 532
Cfr13I	GGNCC	2 cut(s)	198, 409
ClaI	ATCGAT	1 cut(s)	65
CseI	GACGC	1 cut(s)	229
Csp6I	GTAC	3 cut(s)	193, 467, 526
CviAII	CATG	8 cut(s)	186, 256, 374, 463, 547, 608, 683, 822
CviQI	GTAC	3 cut(s)	193, 467, 526
DdeI	CTNAG	3 cut(s)	343, 614, 882
Eam1104I	CTCTTC	1 cut(s)	143
EarI	CTCTTC	1 cut(s)	143
EciI	GGCGGA	2 cut(s)	265, 504
Ecl136II	GAGCTC	1 cut(s)	459
Eco130I	CCWWGG	4 cut(s)	185, 393, 462, 682
Eco24I	GRGCYC	2 cut(s)	238, 461
Eco47I	GGWCC	1 cut(s)	409
Eco53kI	GAGCTC	1 cut(s)	459
EcoICRI	GAGCTC	1 cut(s)	459
EcoT14I	CCWWGG	4 cut(s)	185, 393, 462, 682
EcoT38I	GRGCYC	2 cut(s)	238, 461
ErhI	CCWWGG	4 cut(s)	185, 393, 462, 682
FaeI	CATG	8 cut(s)	189, 259, 377, 466, 550, 611, 686, 825
FatI	CATG	8 cut(s)	185, 255, 373, 462, 546, 607, 682, 821
FauI	CCCGC	1 cut(s)	245
FbaI	TGATCA	2 cut(s)	310, 751
Fnu4HI	GCNGC	7 cut(s)	168, 180, 699, 732, 735, 738, 741
FokI	GGATG	4 cut(s)	35, 319, 663, 860
FriOI	GRGCYC	2 cut(s)	238, 461
Fsp4HI	GCNGC	7 cut(s)	168, 180, 699, 732, 735, 738, 741
FspBI	CTAG	1 cut(s)	53
GlaI	GCGC	1 cut(s)	183
GluI	GCNGC	7 cut(s)	168, 180, 699, 732, 735, 738, 741
HaeII	RGCGCY	1 cut(s)	185
HaeIII	GGCC	1 cut(s)	199
HapII	CCGG	4 cut(s)	363, 446, 486, 533
HgaI	GACGC	1 cut(s)	229
HhaI	GCGC	1 cut(s)	184
Hin1I	GRCGYC	1 cut(s)	99
Hin1II	CATG	8 cut(s)	189, 259, 377, 466, 550, 611, 686, 825
Hin6I	GCGC	1 cut(s)	182
HinP1I	GCGC	1 cut(s)	182
HincII	GTYRAC	3 cut(s)	271, 357, 667
HindII	GTYRAC	3 cut(s)	271, 357, 667
HinfI	GANTC	4 cut(s)	56, 389, 505, 551
HpaII	CCGG	4 cut(s)	363, 446, 486, 533
Hpy166II	GTNNAC	3 cut(s)	271, 357, 667
Hpy188I	TCNGA	7 cut(s)	93, 233, 346, 413, 427, 556, 751
Hpy188III	TCNNGA	5 cut(s)	60, 262, 374, 804, 839
Hpy8I	GTNNAC	3 cut(s)	271, 357, 667
HpyAV	CCTTC	9 cut(s)	125, 142, 238, 289, 293, 511, 655, 725, 756
HpyCH4III	ACNGT	3 cut(s)	268, 403, 854
HpyCH4IV	ACGT	2 cut(s)	99, 528
HpyCH4V	TGCA	3 cut(s)	207, 737, 857
HpyF10VI	GCNNNNNNNGC	5 cut(s)	176, 196, 728, 737, 740
HpyF3I	CTNAG	3 cut(s)	343, 614, 882
HpySE526I	ACGT	2 cut(s)	99, 528
Hsp92I	GRCGYC	1 cut(s)	99
Hsp92II	CATG	8 cut(s)	189, 259, 377, 466, 550, 611, 686, 825
HspAI	GCGC	1 cut(s)	182
Ksp22I	TGATCA	2 cut(s)	310, 751
LmnI	GCTCC	4 cut(s)	305, 464, 640, 748
LpnPI	CCDG	9 cut(s)	181, 303, 376, 459, 499, 546, 683, 824, 876
Lsp1109I	GCAGC	7 cut(s)	179, 191, 710, 718, 721, 727, 749
MaeI	CTAG	1 cut(s)	53
MaeII	ACGT	2 cut(s)	99, 528
MaeIII	GTNAC	2 cut(s)	248, 292
MboII	GAAGA	6 cut(s)	130, 461, 685, 774, 786, 801
MflI	RGATCY	6 cut(s)	111, 286, 422, 559, 709, 806
MhlI	GDGCHC	2 cut(s)	238, 461
MluCI	AATT	1 cut(s)	757
MlyI	GAGTC	1 cut(s)	398
MseI	TTAA	1 cut(s)	21
MslI	CAYNNNNRTG	1 cut(s)	820
MspA1I	CMGCKG	1 cut(s)	740
MspI	CCGG	4 cut(s)	363, 446, 486, 533
MspR9I	CCNGG	1 cut(s)	364
MwoI	GCNNNNNNNGC	5 cut(s)	176, 196, 728, 737, 740
NciI	CCSGG	1 cut(s)	364
NcoI	CCATGG	3 cut(s)	185, 462, 682
NlaIII	CATG	8 cut(s)	189, 259, 377, 466, 550, 611, 686, 825
NlaIV	GGNNCC	4 cut(s)	113, 288, 484, 561
NmuCI	GTSAC	1 cut(s)	248
NspI	RCATGY	1 cut(s)	259
PagI	TCATGA	1 cut(s)	373
PciI	ACATGT	1 cut(s)	255
PcsI	WCGNNNNNNNCGW	1 cut(s)	560
PfeI	GAWTC	3 cut(s)	56, 505, 551
PkrI	GCNGC	7 cut(s)	169, 181, 700, 733, 736, 739, 742
Ple19I	CGATCG	1 cut(s)	65
PleI	GAGTC	1 cut(s)	397
PpsI	GAGTC	1 cut(s)	397
Ppu21I	YACGTR	1 cut(s)	529
PscI	ACATGT	1 cut(s)	255
PshAI	GACNNNNGTC	1 cut(s)	98
Psp124BI	GAGCTC	1 cut(s)	461
PspN4I	GGNNCC	4 cut(s)	113, 288, 484, 561
PspPI	GGNCC	2 cut(s)	198, 409
PstI	CTGCAG	1 cut(s)	739
PsuI	RGATCY	6 cut(s)	111, 286, 422, 559, 709, 806
PvuI	CGATCG	1 cut(s)	65
PvuII	CAGCTG	1 cut(s)	740
RsaI	GTAC	3 cut(s)	194, 468, 527
RsaNI	GTAC	3 cut(s)	193, 467, 526
RseI	CAYNNNNRTG	1 cut(s)	820
SacI	GAGCTC	1 cut(s)	461
SaqAI	TTAA	1 cut(s)	21
SatI	GCNGC	7 cut(s)	168, 180, 699, 732, 735, 738, 741
Sau96I	GGNCC	2 cut(s)	198, 409
ScaI	AGTACT	1 cut(s)	194
SchI	GAGTC	1 cut(s)	398
ScrFI	CCNGG	1 cut(s)	364
SduI	GDGCHC	2 cut(s)	238, 461
SfcI	CTRYAG	1 cut(s)	735
SgrAI	CRCCGGYG	1 cut(s)	485
SinI	GGWCC	1 cut(s)	409
SmiMI	CAYNNNNRTG	1 cut(s)	820
Sse9I	AATT	1 cut(s)	757
SsiI	CCGC	3 cut(s)	238, 276, 489
SspMI	CTAG	1 cut(s)	53
SstI	GAGCTC	1 cut(s)	461
StyD4I	CCNGG	1 cut(s)	362
StyI	CCWWGG	4 cut(s)	185, 393, 462, 682
TaaI	ACNGT	3 cut(s)	268, 403, 854
TaiI	ACGT	2 cut(s)	102, 531
TaqI	TCGA	1 cut(s)	65
TasI	AATT	1 cut(s)	757
TatI	WGTACW	1 cut(s)	192
TfiI	GAWTC	3 cut(s)	56, 505, 551
Tru1I	TTAA	1 cut(s)	21
Tru9I	TTAA	1 cut(s)	21
TscAI	CASTG	3 cut(s)	247, 253, 859
TseFI	GTSAC	1 cut(s)	248
TseI	GCWGC	7 cut(s)	167, 179, 698, 731, 734, 737, 740
Tsp45I	GTSAC	1 cut(s)	248
TspDTI	ATGAA	3 cut(s)	137, 313, 518
TspGWI	ACGGA	5 cut(s)	110, 311, 396, 498, 552
TspRI	CASTG	3 cut(s)	247, 253, 859
VpaK11BI	GGWCC	1 cut(s)	409
XceI	RCATGY	1 cut(s)	259
XcmI	CCANNNNNNNNNTGG	1 cut(s)	192
XspI	CTAG	1 cut(s)	53
ZraI	GACGTC	1 cut(s)	100
ZrmI	AGTACT	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.