Rh3BG228000

transcription repressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0005069
Physical Location & Seq
Forward (+)
20966806 .. 20968763
1958 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG228000.1

Sequence Viewer

Length: 891 bp
ATGAAGCTTCTCCCTTCTTCTCTGTTCAAGAACACAGCACAAGCACCAGAGCCAAAGTCTTCTTCTTCCTCTTGGCCCTGGCCTTCTTGCACACAAACCAGAACCATCTCCTTCAGAATTCCCGGCAATGATATTTTCAAGACCATAAACTCGGCCTACTTCGACACCAACACGCCCGAGTCCTTCTTCACTAACTCGTCTGAGGGCTGCCCGAGTTTCTCCACTACAGTTTCTGAAGAAGAGTCCTCGGGCGGAGGAGGAGATCCGATAGAGACTGTGATCAACAAAGGGTTGAGATCAGAGCGGCTCTTCTTCGAGCCCGGTGAGACCAGCTCTATTTTAGACAAGGAATCTATCAAGGATGATGATGAAGAAGAAGATGATGGGGTTGATGATGAACTTGCTGTTGGTGATAATAACATTCCATTCAAGGAGAGTGTGGCTTTGTCAATGGACTCGCCGGACCCGTATGTGGATTTCAGAAAATCCATGGAGGAAATGGTGGAAGCTCATGGTTTGAAGGACTGGGAACAACTTGAAGAGCTTTTGTGTTGGTATTTGAGGGTCAATGGAAAATCAAATCATGGATATATTGTTGGAGCTTTCGTTGATCTTTTGGTAGGTCTCGCATTTAGTACTACTATTTCTCCTCCTTCTTGTTCATGTAGTGAGTACTCTCCTTCTACTCCTTTGTCTTTTTACAACAGTACTACTTCTTGTTCATCTTCTTCTACCTCTACTCCTTGCGTGTCCTCCATTGGACCTGAGGAAGGATCGGAAATGAGTACCAGCATCATTCCTTATTTGTCTTCCCTATTAGAAGCTGAGGAAGAGATTAATGAAGAACAAGATGATGACGATGATGATGATGATGATGGTGCTTCATCTTAG

Protein Analysis

296

Amino Acids

32.26

Weight (kDa)

4.05

Isoelectric Point (pI)

59.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ovate PF04844 153 - 209 4.9e-25 Transcriptional repressor, ovate
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 304
AciI CCGC 2 cut(s) 252, 304
AclWI GGATC 2 cut(s) 257, 781
AcsI RAATTY 1 cut(s) 117
AcuI CTGAAG 2 cut(s) 97, 255
AfaI GTAC 4 cut(s) 637, 674, 709, 787
AfiI CCNNNNNNNGG 2 cut(s) 472, 770
AgsI TTSAA 5 cut(s) 28, 139, 430, 520, 539
AjnI CCWGG 1 cut(s) 77
AjuI GAANNNNNNNTTGG 4 cut(s) 46, 78, 390, 422
AluBI AGCT 6 cut(s) 7, 333, 509, 544, 602, 824
AluI AGCT 6 cut(s) 7, 333, 509, 544, 602, 824
Alw26I GTCTC 3 cut(s) 266, 320, 629
AlwI GGATC 2 cut(s) 257, 781
AlwNI CAGNNNCTG 1 cut(s) 233
Ama87I CYCGRG 3 cut(s) 176, 211, 247
AoxI GGCC 3 cut(s) 74, 80, 153
ApeKI GCWGC 1 cut(s) 207
ApoI RAATTY 1 cut(s) 117
AseI ATTAAT 1 cut(s) 837
AspS9I GGNCC 3 cut(s) 75, 463, 761
AsuC2I CCSGG 2 cut(s) 123, 321
AsuHPI GGTGA 2 cut(s) 335, 422
AvaI CYCGRG 3 cut(s) 176, 211, 247
AvaII GGWCC 2 cut(s) 463, 761
AxyI CCTNAGG 1 cut(s) 765
BanII GRGCYC 1 cut(s) 321
BbsI GAAGAC 2 cut(s) 51, 801
BbvCI CCTCAGC 1 cut(s) 825
BbvI GCAGC 1 cut(s) 194
BccI CCATC 3 cut(s) 113, 377, 869
BciT130I CCWGG 1 cut(s) 79
BclI TGATCA 1 cut(s) 279
BcnI CCSGG 2 cut(s) 123, 321
BcoDI GTCTC 3 cut(s) 266, 320, 629
BfmI CTRYAG 1 cut(s) 225
BisI GCNGC 2 cut(s) 208, 305
BlsI GCNGC 2 cut(s) 209, 306
BmcAI AGTACT 3 cut(s) 637, 674, 709
Bme1390I CCNGG 3 cut(s) 79, 123, 321
Bme18I GGWCC 2 cut(s) 463, 761
BmeT110I CYCGRG 3 cut(s) 176, 211, 247
BmgT120I GGNCC 3 cut(s) 75, 463, 761
BmiI GGNNCC 1 cut(s) 465
BmrFI CCNGG 3 cut(s) 79, 123, 321
BmrI ACTGGG 1 cut(s) 535
BmsI GCATC 1 cut(s) 801
BmuI ACTGGG 1 cut(s) 535
BpiI GAAGAC 2 cut(s) 51, 801
BplI GAGNNNNNCTC 2 cut(s) 317, 349
Bpu10I CCTNAGC 1 cut(s) 825
BpuMI CCSGG 2 cut(s) 123, 321
BsaI GGTCTC 2 cut(s) 320, 629
BsaJI CCNNGG 3 cut(s) 77, 246, 489
BsaXI ACNNNNNCTCC 6 cut(s) 591, 621, 631, 661, 724, 754
Bsc4I CCNNNNNNNGG 2 cut(s) 472, 770
Bse1I ACTGG 1 cut(s) 530
Bse21I CCTNAGG 1 cut(s) 765
Bse3DI GCAATG 1 cut(s) 133
BseBI CCWGG 1 cut(s) 79
BseDI CCNNGG 3 cut(s) 77, 246, 489
BseGI GGATG 1 cut(s) 367
BseLI CCNNNNNNNGG 2 cut(s) 472, 770
BseMI GCAATG 1 cut(s) 133
BseMII CTCAG 3 cut(s) 192, 756, 816
BseNI ACTGG 1 cut(s) 530
BseRI GAGGAG 3 cut(s) 270, 273, 639
BseXI GCAGC 1 cut(s) 194
BshFI GGCC 3 cut(s) 76, 82, 155
BsiHKCI CYCGRG 3 cut(s) 176, 211, 247
BsiSI CCGG 3 cut(s) 123, 321, 461
BslI CCNNNNNNNGG 2 cut(s) 472, 770
BsmAI GTCTC 3 cut(s) 266, 320, 629
BsnI GGCC 3 cut(s) 76, 82, 155
Bso31I GGTCTC 2 cut(s) 320, 629
BsoBI CYCGRG 3 cut(s) 176, 211, 247
Bsp1286I GDGCHC 1 cut(s) 321
Bsp143I GATC 5 cut(s) 262, 279, 296, 610, 773
Bsp19I CCATGG 1 cut(s) 489
BspACI CCGC 2 cut(s) 252, 304
BspANI GGCC 3 cut(s) 76, 82, 155
BspCNI CTCAG 3 cut(s) 193, 757, 817
BspLI GGNNCC 1 cut(s) 465
BspPI GGATC 2 cut(s) 257, 781
BspQI GCTCTTC 2 cut(s) 314, 534
BspTNI GGTCTC 2 cut(s) 320, 629
BsrBI CCGCTC 1 cut(s) 304
BsrDI GCAATG 1 cut(s) 133
BsrI ACTGG 1 cut(s) 530
BssECI CCNNGG 3 cut(s) 77, 246, 489
BssMI GATC 5 cut(s) 262, 279, 296, 610, 773
BssT1I CCWWGG 1 cut(s) 489
Bst2UI CCWGG 1 cut(s) 79
Bst4CI ACNGT 3 cut(s) 229, 277, 707
Bst6I CTCTTC 4 cut(s) 234, 314, 534, 825
BstDEI CTNAG 4 cut(s) 201, 765, 825, 888
BstDSI CCRYGG 1 cut(s) 489
BstENI CCTNNNNNAGG 1 cut(s) 768
BstF5I GGATG 1 cut(s) 367
BstKTI GATC 5 cut(s) 265, 282, 299, 613, 776
BstMAI GTCTC 3 cut(s) 266, 320, 629
BstMBI GATC 5 cut(s) 262, 279, 296, 610, 773
BstNI CCWGG 1 cut(s) 79
BstSCI CCNGG 3 cut(s) 77, 121, 319
BstSFI CTRYAG 1 cut(s) 225
BstV1I GCAGC 1 cut(s) 194
BstV2I GAAGAC 2 cut(s) 51, 801
BstX2I RGATCY 1 cut(s) 262
BstYI RGATCY 1 cut(s) 262
Bsu36I CCTNAGG 1 cut(s) 765
BsuRI GGCC 3 cut(s) 76, 82, 155
BtgI CCRYGG 1 cut(s) 489
BtsCI GGATG 1 cut(s) 367
CaiI CAGNNNCTG 1 cut(s) 233
Cfr13I GGNCC 3 cut(s) 75, 463, 761
Csp6I GTAC 4 cut(s) 636, 673, 708, 786
CviAII CATG 4 cut(s) 490, 512, 584, 663
CviQI GTAC 4 cut(s) 636, 673, 708, 786
DdeI CTNAG 4 cut(s) 201, 765, 825, 888
DpnI GATC 5 cut(s) 264, 281, 298, 612, 775
DpnII GATC 5 cut(s) 262, 279, 296, 610, 773
Eam1104I CTCTTC 4 cut(s) 234, 314, 534, 825
EarI CTCTTC 4 cut(s) 234, 314, 534, 825
EciI GGCGGA 1 cut(s) 267
Eco130I CCWWGG 1 cut(s) 489
Eco24I GRGCYC 1 cut(s) 321
Eco31I GGTCTC 2 cut(s) 320, 629
Eco47I GGWCC 2 cut(s) 463, 761
Eco57I CTGAAG 2 cut(s) 97, 255
Eco81I CCTNAGG 1 cut(s) 765
Eco88I CYCGRG 3 cut(s) 176, 211, 247
EcoNI CCTNNNNNAGG 1 cut(s) 768
EcoRI GAATTC 1 cut(s) 117
EcoRII CCWGG 1 cut(s) 77
EcoT14I CCWWGG 1 cut(s) 489
EcoT38I GRGCYC 1 cut(s) 321
ErhI CCWWGG 1 cut(s) 489
FaeI CATG 4 cut(s) 493, 515, 587, 666
FaiI YATR 7 cut(s) 146, 471, 491, 513, 585, 591, 664
FatI CATG 4 cut(s) 489, 511, 583, 662
FbaI TGATCA 1 cut(s) 279
Fnu4HI GCNGC 2 cut(s) 208, 305
FokI GGATG 1 cut(s) 374
FriOI GRGCYC 1 cut(s) 321
Fsp4HI GCNGC 2 cut(s) 208, 305
GluI GCNGC 2 cut(s) 208, 305
HaeIII GGCC 3 cut(s) 76, 82, 155
HapII CCGG 3 cut(s) 123, 321, 461
Hin1II CATG 4 cut(s) 493, 515, 587, 666
HindIII AAGCTT 1 cut(s) 5
HinfI GANTC 4 cut(s) 179, 242, 350, 455
HpaII CCGG 3 cut(s) 123, 321, 461
HphI GGTGA 2 cut(s) 335, 422
Hpy188I TCNGA 7 cut(s) 116, 202, 235, 267, 301, 482, 778
Hpy188III TCNNGA 2 cut(s) 28, 139
HpyAV CCTTC 8 cut(s) 24, 93, 121, 193, 514, 663, 690, 764
HpyCH4III ACNGT 3 cut(s) 229, 277, 707
HpyCH4V TGCA 1 cut(s) 90
HpyF3I CTNAG 4 cut(s) 201, 765, 825, 888
Hsp92II CATG 4 cut(s) 493, 515, 587, 666
Ksp22I TGATCA 1 cut(s) 279
Kzo9I GATC 5 cut(s) 262, 279, 296, 610, 773
LguI GCTCTTC 2 cut(s) 314, 534
LmnI GCTCC 1 cut(s) 599
Lsp1109I GCAGC 1 cut(s) 194
LweI GCATC 1 cut(s) 801
MalI GATC 5 cut(s) 264, 281, 298, 612, 775
MbiI CCGCTC 1 cut(s) 304
MboI GATC 5 cut(s) 262, 279, 296, 610, 773
MflI RGATCY 1 cut(s) 262
MhlI GDGCHC 1 cut(s) 321
MluCI AATT 1 cut(s) 117
MlyI GAGTC 3 cut(s) 188, 251, 449
MmeI TCCRAC 1 cut(s) 577
MseI TTAA 1 cut(s) 837
MspI CCGG 3 cut(s) 123, 321, 461
MspR9I CCNGG 3 cut(s) 79, 123, 321
MvaI CCWGG 1 cut(s) 79
NciI CCSGG 2 cut(s) 123, 321
NcoI CCATGG 1 cut(s) 489
NdeII GATC 5 cut(s) 262, 279, 296, 610, 773
NlaIII CATG 4 cut(s) 493, 515, 587, 666
NlaIV GGNNCC 1 cut(s) 465
NmeAIII GCCGAG 1 cut(s) 131
PciSI GCTCTTC 2 cut(s) 314, 534
PcsI WCGNNNNNNNCGW 1 cut(s) 464
PfeI GAWTC 1 cut(s) 350
PkrI GCNGC 2 cut(s) 209, 306
PleI GAGTC 3 cut(s) 187, 250, 449
PpsI GAGTC 3 cut(s) 187, 250, 449
PshBI ATTAAT 1 cut(s) 837
Psp6I CCWGG 1 cut(s) 77
PspGI CCWGG 1 cut(s) 77
PspN4I GGNNCC 1 cut(s) 465
PspPI GGNCC 3 cut(s) 75, 463, 761
PstNI CAGNNNCTG 1 cut(s) 233
PsuI RGATCY 1 cut(s) 262
RsaI GTAC 4 cut(s) 637, 674, 709, 787
RsaNI GTAC 4 cut(s) 636, 673, 708, 786
SapI GCTCTTC 2 cut(s) 314, 534
SaqAI TTAA 1 cut(s) 837
SatI GCNGC 2 cut(s) 208, 305
Sau3AI GATC 5 cut(s) 262, 279, 296, 610, 773
Sau96I GGNCC 3 cut(s) 75, 463, 761
ScaI AGTACT 3 cut(s) 637, 674, 709
SchI GAGTC 3 cut(s) 188, 251, 449
ScrFI CCNGG 3 cut(s) 79, 123, 321
SduI GDGCHC 1 cut(s) 321
SetI ASST 9 cut(s) 9, 335, 511, 546, 604, 625, 737, 766, 826
SfaNI GCATC 1 cut(s) 801
SfcI CTRYAG 1 cut(s) 225
SinI GGWCC 2 cut(s) 463, 761
Sse9I AATT 1 cut(s) 117
SsiI CCGC 2 cut(s) 252, 304
StyD4I CCNGG 3 cut(s) 77, 121, 319
StyI CCWWGG 1 cut(s) 489
TaaI ACNGT 3 cut(s) 229, 277, 707
TaqI TCGA 2 cut(s) 162, 315
TasI AATT 1 cut(s) 117
TatI WGTACW 3 cut(s) 635, 672, 707
TauI GCSGC 1 cut(s) 307
TfiI GAWTC 1 cut(s) 350
Tru1I TTAA 1 cut(s) 837
Tru9I TTAA 1 cut(s) 837
TseI GCWGC 1 cut(s) 207
TspDTI ATGAA 7 cut(s) 17, 384, 411, 651, 711, 855, 873
VpaK11BI GGWCC 2 cut(s) 463, 761
VspI ATTAAT 1 cut(s) 837
XagI CCTNNNNNAGG 1 cut(s) 768
XapI RAATTY 1 cut(s) 117
XcmI CCANNNNNNNNNTGG 1 cut(s) 496
ZrmI AGTACT 3 cut(s) 637, 674, 709
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.