Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0005069

Physical Location & Seq

Genomic Coordinates Forward (+)

5799109 .. 5799894

Gene Structure 786 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1061800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGAAGTTGCCTCGTCTCTTCAAAAAGAAGGAAACAACAACGTTAGCAGCCACATCGGCAGTGCCATGGCAGTACTGGCCCTCTTGCAACCACCCCAAGACGCTTTCCTTCCGAGCCGGAAGTGGCAGTGACAACATGTTCAAGACTGTCAACTCCGTCTTCTTCGATCCAATTACGGAAGGAGGAGCTGATCAGTCTTGGTTCATAAACTCATCCTCCTCCTCAGATAATCAGTCAACAACCGAGTGTGATCATGAGGACGGAGAGGAGTCCTTGGATACGGTGGTGGTTCGAGGGGCAATATCCGAGAGGCTGTTTTTCAAGGCGGAAGACACGAGCTCCATGGTACAAAAGGCGAAAGGCGCCGGCGGAGGAGAGATGATGAATCCGTTGTTGAAGGAAAAGTACGTGGTGGTGTTAGCCATCATGGAATCGGAGGATCCGTTGAAAGATTTTAGGAGGTCAATGGAGGAGATGGTGGAATGTCATGGGCTTAGTAAAGATTGGGAGGGTTTGGAGGAACTGTTGGGATGGTATTTGAAGGTCAACCAGAAGAACAACCATGGCTTTATAGTGGCAGCATTTGTGGATCTCCTTCTTGCTCTTTCTGCTGCTGCAGCTGCTCCTTCTCATCATAATTATTATTATTCCACTTCTTTTTCTTCTGCCATTTCTTCTTTTTCTAGATCTTCTCCAGTGTCATCTTCTTTTCAAGGTCAGGAGGAGGATGACATTGCAGAACAAGTAGAGATCACAATGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ovate

Protein Analysis

255

Amino Acids

28.09

Weight (kDa)

4.84

Isoelectric Point (pI)

49.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ovate	PF04844	145 - 202	4.1e-24	Transcriptional repressor, ovate

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04820
fragaria_vesca	FvH4_6g19870
malus_domestica	MD02G1258900.v1.1 MD07G1061800.v1.1 MD07G1061900.v1.1 MD12G1034200.v1.1 MD14G1035600.v1.1
prunus_persica	Prupe.2G071500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1
pyrus_communis	pycom07g04730 pycom12g03170 pycom14g03130
rosa_chinensis	RchiOBHm_Chr3g0475291
rosa_laevigata	RLG00000023854
rosa_multiflora	Rmu_ssc0000140.1_g000002
rosa_roxburghii	Rroxscaffold_6G00406410
rosa_rugosa	Rorug03G0147700
rosa_samantha	Rh3AG197700 Rh3BG228000 Rh3DG223200
rosa_wichuraiana	Rw3G017970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	362
AciI	CCGC	2 cut(s)	326, 369
AclI	AACGTT	1 cut(s)	41
AclWI	GGATC	4 cut(s)	161, 434, 447, 597
AcyI	GRCGYC	1 cut(s)	363
AfaI	GTAC	3 cut(s)	74, 348, 407
AflIII	ACRYGT	1 cut(s)	135
AgsI	TTSAA	7 cut(s)	22, 142, 322, 397, 448, 541, 713
AluBI	AGCT	3 cut(s)	188, 339, 620
AluI	AGCT	3 cut(s)	188, 339, 620
Alw21I	GWGCWC	1 cut(s)	341
Alw26I	GTCTC	1 cut(s)	20
AlwI	GGATC	4 cut(s)	161, 434, 447, 597
AoxI	GGCC	1 cut(s)	77
ApeKI	GCWGC	6 cut(s)	47, 578, 611, 614, 617, 620
AspLEI	GCGC	1 cut(s)	365
AspS9I	GGNCC	1 cut(s)	78
BaeI	ACNNNNGTAYC	2 cut(s)	270, 303
BamHI	GGATCC	1 cut(s)	439
BanI	GGYRCC	1 cut(s)	362
BanII	GRGCYC	1 cut(s)	341
BarI	GAAGNNNNNNTAC	2 cut(s)	389, 421
BauI	CACGAG	1 cut(s)	334
BbsI	GAAGAC	2 cut(s)	151, 336
Bbv12I	GWGCWC	1 cut(s)	341
BbvI	GCAGC	6 cut(s)	59, 590, 598, 601, 607, 629
BccI	CCATC	3 cut(s)	431, 469, 525
BcgI	CGANNNNNNTGC	2 cut(s)	36, 70
BciVI	GTATCC	1 cut(s)	271
BclI	TGATCA	2 cut(s)	190, 250
BcoDI	GTCTC	1 cut(s)	20
BfaI	CTAG	1 cut(s)	684
BfmI	CTRYAG	1 cut(s)	615
BfoI	RGCGCY	1 cut(s)	366
BfuI	GTATCC	1 cut(s)	271
BglI	GCCNNNNNGGC	1 cut(s)	56
BglII	AGATCT	1 cut(s)	686
BisI	GCNGC	6 cut(s)	48, 579, 612, 615, 618, 621
BlsI	GCNGC	6 cut(s)	49, 580, 613, 616, 619, 622
BmcAI	AGTACT	1 cut(s)	74
BmgT120I	GGNCC	1 cut(s)	78
BmiI	GGNNCC	2 cut(s)	364, 441
BpiI	GAAGAC	2 cut(s)	151, 336
BpmI	CTGGAG	1 cut(s)	678
BsaAI	YACGTR	1 cut(s)	409
BsaHI	GRCGYC	1 cut(s)	363
BsaJI	CCNNGG	4 cut(s)	65, 273, 342, 562
BsaXI	ACNNNNNCTCC	8 cut(s)	200, 230, 323, 353, 428, 458, 509, 539
Bse118I	RCCGGY	1 cut(s)	365
Bse1I	ACTGG	2 cut(s)	80, 695
Bse3DI	GCAATG	1 cut(s)	732
BseDI	CCNNGG	4 cut(s)	65, 273, 342, 562
BseGI	GGATG	3 cut(s)	212, 536, 733
BseMI	GCAATG	1 cut(s)	732
BseMII	CTCAG	1 cut(s)	237
BseNI	ACTGG	2 cut(s)	80, 695
BseRI	GAGGAG	7 cut(s)	198, 208, 211, 281, 387, 485, 737
BseXI	GCAGC	6 cut(s)	59, 590, 598, 601, 607, 629
BshFI	GGCC	1 cut(s)	79
BshNI	GGYRCC	1 cut(s)	362
BsiHKAI	GWGCWC	1 cut(s)	341
BsiSI	CCGG	2 cut(s)	117, 366
BsmAI	GTCTC	1 cut(s)	20
BsmBI	CGTCTC	1 cut(s)	20
BsnI	GGCC	1 cut(s)	79
Bsp1286I	GDGCHC	1 cut(s)	341
Bsp143I	GATC	7 cut(s)	166, 190, 250, 439, 589, 686, 750
Bsp19I	CCATGG	3 cut(s)	65, 342, 562
BspACI	CCGC	2 cut(s)	326, 369
BspANI	GGCC	1 cut(s)	79
BspCNI	CTCAG	1 cut(s)	236
BspHI	TCATGA	1 cut(s)	253
BspLI	GGNNCC	2 cut(s)	364, 441
BspMAI	CTGCAG	1 cut(s)	619
BspPI	GGATC	4 cut(s)	161, 434, 447, 597
BspT107I	GGYRCC	1 cut(s)	362
BsrDI	GCAATG	1 cut(s)	732
BsrFI	RCCGGY	1 cut(s)	365
BsrI	ACTGG	2 cut(s)	80, 695
BssAI	RCCGGY	1 cut(s)	365
BssECI	CCNNGG	4 cut(s)	65, 273, 342, 562
BssMI	GATC	7 cut(s)	166, 190, 250, 439, 589, 686, 750
BssNI	GRCGYC	1 cut(s)	363
BssSI	CACGAG	1 cut(s)	334
BssT1I	CCWWGG	4 cut(s)	65, 273, 342, 562
Bst2BI	CACGAG	1 cut(s)	334
Bst4CI	ACNGT	3 cut(s)	148, 283, 525
Bst6I	CTCTTC	1 cut(s)	23
BstACI	GRCGYC	1 cut(s)	363
BstBAI	YACGTR	1 cut(s)	409
BstC8I	GCNNGC	1 cut(s)	367
BstDEI	CTNAG	3 cut(s)	223, 494, 762
BstDSI	CCRYGG	3 cut(s)	65, 342, 562
BstF5I	GGATG	3 cut(s)	212, 536, 733
BstH2I	RGCGCY	1 cut(s)	366
BstHHI	GCGC	1 cut(s)	365
BstKTI	GATC	7 cut(s)	169, 193, 253, 442, 592, 689, 753
BstMAI	GTCTC	1 cut(s)	20
BstMBI	GATC	7 cut(s)	166, 190, 250, 439, 589, 686, 750
BstMWI	GCNNNNNNNGC	6 cut(s)	56, 76, 362, 608, 617, 620
BstNSI	RCATGY	1 cut(s)	139
BstSFI	CTRYAG	1 cut(s)	615
BstV1I	GCAGC	6 cut(s)	59, 590, 598, 601, 607, 629
BstV2I	GAAGAC	2 cut(s)	151, 336
BstX2I	RGATCY	3 cut(s)	439, 589, 686
BstYI	RGATCY	3 cut(s)	439, 589, 686
BsuI	GTATCC	1 cut(s)	271
BsuRI	GGCC	1 cut(s)	79
BtgI	CCRYGG	3 cut(s)	65, 342, 562
BtsCI	GGATG	3 cut(s)	212, 536, 733
BtsI	GCAGTG	2 cut(s)	66, 133
BtsIMutI	CAGTG	3 cut(s)	66, 133, 702
Cac8I	GCNNGC	1 cut(s)	367
CciI	TCATGA	1 cut(s)	253
CfoI	GCGC	1 cut(s)	365
Cfr10I	RCCGGY	1 cut(s)	365
Cfr13I	GGNCC	1 cut(s)	78
CseI	GACGC	1 cut(s)	109
Csp6I	GTAC	3 cut(s)	73, 347, 406
CviAII	CATG	7 cut(s)	66, 136, 254, 343, 427, 488, 563
CviQI	GTAC	3 cut(s)	73, 347, 406
DdeI	CTNAG	3 cut(s)	223, 494, 762
DinI	GGCGCC	1 cut(s)	364
DpnI	GATC	7 cut(s)	168, 192, 252, 441, 591, 688, 752
DpnII	GATC	7 cut(s)	166, 190, 250, 439, 589, 686, 750
Eam1104I	CTCTTC	1 cut(s)	23
EarI	CTCTTC	1 cut(s)	23
EciI	GGCGGA	2 cut(s)	341, 384
Ecl136II	GAGCTC	1 cut(s)	339
Eco130I	CCWWGG	4 cut(s)	65, 273, 342, 562
Eco24I	GRGCYC	1 cut(s)	341
Eco53kI	GAGCTC	1 cut(s)	339
EcoICRI	GAGCTC	1 cut(s)	339
EcoT14I	CCWWGG	4 cut(s)	65, 273, 342, 562
EcoT38I	GRGCYC	1 cut(s)	341
EgeI	GGCGCC	1 cut(s)	364
EheI	GGCGCC	1 cut(s)	364
ErhI	CCWWGG	4 cut(s)	65, 273, 342, 562
Esp3I	CGTCTC	1 cut(s)	20
FaeI	CATG	7 cut(s)	69, 139, 257, 346, 430, 491, 566
FatI	CATG	7 cut(s)	65, 135, 253, 342, 426, 487, 562
FbaI	TGATCA	2 cut(s)	190, 250
Fnu4HI	GCNGC	6 cut(s)	48, 579, 612, 615, 618, 621
FokI	GGATG	3 cut(s)	199, 543, 740
FriOI	GRGCYC	1 cut(s)	341
Fsp4HI	GCNGC	6 cut(s)	48, 579, 612, 615, 618, 621
FspBI	CTAG	1 cut(s)	684
GlaI	GCGC	1 cut(s)	364
GluI	GCNGC	6 cut(s)	48, 579, 612, 615, 618, 621
GsuI	CTGGAG	1 cut(s)	678
HaeII	RGCGCY	1 cut(s)	366
HaeIII	GGCC	1 cut(s)	79
HapII	CCGG	2 cut(s)	117, 366
HgaI	GACGC	1 cut(s)	109
HhaI	GCGC	1 cut(s)	365
Hin1I	GRCGYC	1 cut(s)	363
Hin1II	CATG	7 cut(s)	69, 139, 257, 346, 430, 491, 566
Hin6I	GCGC	1 cut(s)	363
HinP1I	GCGC	1 cut(s)	363
HincII	GTYRAC	3 cut(s)	151, 237, 547
HindII	GTYRAC	3 cut(s)	151, 237, 547
HinfI	GANTC	3 cut(s)	269, 385, 431
HpaII	CCGG	2 cut(s)	117, 366
Hpy166II	GTNNAC	3 cut(s)	151, 237, 547
Hpy188I	TCNGA	4 cut(s)	113, 226, 307, 436
Hpy188III	TCNNGA	4 cut(s)	142, 254, 684, 719
Hpy8I	GTNNAC	3 cut(s)	151, 237, 547
HpyAV	CCTTC	7 cut(s)	22, 118, 173, 391, 535, 605, 636
HpyCH4III	ACNGT	3 cut(s)	148, 283, 525
HpyCH4IV	ACGT	2 cut(s)	41, 408
HpyCH4V	TGCA	3 cut(s)	87, 617, 737
HpyF10VI	GCNNNNNNNGC	6 cut(s)	56, 76, 362, 608, 617, 620
HpyF3I	CTNAG	3 cut(s)	223, 494, 762
HpySE526I	ACGT	2 cut(s)	41, 408
Hsp92I	GRCGYC	1 cut(s)	363
Hsp92II	CATG	7 cut(s)	69, 139, 257, 346, 430, 491, 566
HspAI	GCGC	1 cut(s)	363
KasI	GGCGCC	1 cut(s)	362
KroI	GCCGGC	1 cut(s)	365
KroNI	GCCGGC	1 cut(s)	367
Ksp22I	TGATCA	2 cut(s)	190, 250
Kzo9I	GATC	7 cut(s)	166, 190, 250, 439, 589, 686, 750
LmnI	GCTCC	3 cut(s)	185, 344, 628
LpnPI	CCDG	6 cut(s)	61, 130, 379, 563, 704, 708
Lsp1109I	GCAGC	6 cut(s)	59, 590, 598, 601, 607, 629
MaeI	CTAG	1 cut(s)	684
MaeII	ACGT	2 cut(s)	41, 408
MaeIII	GTNAC	1 cut(s)	128
MalI	GATC	7 cut(s)	168, 192, 252, 441, 591, 688, 752
MboI	GATC	7 cut(s)	166, 190, 250, 439, 589, 686, 750
MboII	GAAGA	9 cut(s)	10, 151, 154, 341, 565, 654, 666, 681, 696
MflI	RGATCY	3 cut(s)	439, 589, 686
MhlI	GDGCHC	1 cut(s)	341
MluCI	AATT	2 cut(s)	171, 637
Mly113I	GGCGCC	1 cut(s)	363
MlyI	GAGTC	1 cut(s)	278
MreI	CGCCGGCG	1 cut(s)	365
MroNI	GCCGGC	1 cut(s)	365
MspA1I	CMGCKG	1 cut(s)	620
MspI	CCGG	2 cut(s)	117, 366
MwoI	GCNNNNNNNGC	6 cut(s)	56, 76, 362, 608, 617, 620
NaeI	GCCGGC	1 cut(s)	367
NarI	GGCGCC	1 cut(s)	363
NcoI	CCATGG	3 cut(s)	65, 342, 562
NdeII	GATC	7 cut(s)	166, 190, 250, 439, 589, 686, 750
NgoMIV	GCCGGC	1 cut(s)	365
NlaIII	CATG	7 cut(s)	69, 139, 257, 346, 430, 491, 566
NlaIV	GGNNCC	2 cut(s)	364, 441
NmuCI	GTSAC	1 cut(s)	128
NspI	RCATGY	1 cut(s)	139
PagI	TCATGA	1 cut(s)	253
PciI	ACATGT	1 cut(s)	135
PcsI	WCGNNNNNNNCGW	1 cut(s)	440
PdiI	GCCGGC	1 cut(s)	367
PfeI	GAWTC	2 cut(s)	385, 431
PkrI	GCNGC	6 cut(s)	49, 580, 613, 616, 619, 622
PleI	GAGTC	1 cut(s)	277
PluTI	GGCGCC	1 cut(s)	366
PpsI	GAGTC	1 cut(s)	277
Ppu21I	YACGTR	1 cut(s)	409
PscI	ACATGT	1 cut(s)	135
Psp124BI	GAGCTC	1 cut(s)	341
Psp1406I	AACGTT	1 cut(s)	41
PspN4I	GGNNCC	2 cut(s)	364, 441
PspPI	GGNCC	1 cut(s)	78
PstI	CTGCAG	1 cut(s)	619
PsuI	RGATCY	3 cut(s)	439, 589, 686
PvuII	CAGCTG	1 cut(s)	620
RsaI	GTAC	3 cut(s)	74, 348, 407
RsaNI	GTAC	3 cut(s)	73, 347, 406
SacI	GAGCTC	1 cut(s)	341
SatI	GCNGC	6 cut(s)	48, 579, 612, 615, 618, 621
Sau3AI	GATC	7 cut(s)	166, 190, 250, 439, 589, 686, 750
Sau96I	GGNCC	1 cut(s)	78
ScaI	AGTACT	1 cut(s)	74
SchI	GAGTC	1 cut(s)	278
SduI	GDGCHC	1 cut(s)	341
SetI	ASST	8 cut(s)	44, 190, 341, 411, 464, 546, 622, 718
SfcI	CTRYAG	1 cut(s)	615
SfoI	GGCGCC	1 cut(s)	364
SgrAI	CRCCGGYG	1 cut(s)	365
Sse9I	AATT	2 cut(s)	171, 637
SsiI	CCGC	2 cut(s)	326, 369
SspDI	GGCGCC	1 cut(s)	362
SspMI	CTAG	1 cut(s)	684
SstI	GAGCTC	1 cut(s)	341
StyI	CCWWGG	4 cut(s)	65, 273, 342, 562
TaaI	ACNGT	3 cut(s)	148, 283, 525
TaiI	ACGT	2 cut(s)	44, 411
TaqI	TCGA	2 cut(s)	165, 292
TasI	AATT	2 cut(s)	171, 637
TatI	WGTACW	1 cut(s)	72
TfiI	GAWTC	2 cut(s)	385, 431
TscAI	CASTG	3 cut(s)	66, 133, 702
TseFI	GTSAC	1 cut(s)	128
TseI	GCWGC	6 cut(s)	47, 578, 611, 614, 617, 620
Tsp45I	GTSAC	1 cut(s)	128
TspDTI	ATGAA	3 cut(s)	17, 193, 398
TspGWI	ACGGA	5 cut(s)	145, 191, 276, 378, 432
TspRI	CASTG	3 cut(s)	66, 133, 702
XbaI	TCTAGA	1 cut(s)	683
XceI	RCATGY	1 cut(s)	139
XcmI	CCANNNNNNNNNTGG	1 cut(s)	72
XspI	CTAG	1 cut(s)	684
ZrmI	AGTACT	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.