Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0005069

Physical Location & Seq

Genomic Coordinates Reverse (-)

31217740 .. 31218042

Gene Structure 303 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1258900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGTGGTGGTCCGAGGGGCAAGATCCGAGAGGCTGTTTTTCGAGCCGGAAGACACGAGCTGCATGGTAGGTATGGTAGACAAGGTGAAAGCAGACGGCGGAGGAGGAGAGATGATGAATCCGTCGTTGGAGGAAAAGTACGTGGTGGTGTTAGCCGGCATGGAATCGGAGGATCGGTTGAAAGACTTTAGGAGGTCAATGGAGGAGATGGTGGAATGTCATGCGCTTAAAGATTGGGAGTGTTTGGTGGAGCTGTTAGGATGGTATTTGAAGGTCAACCCAAAGAAGAATCATGGCTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ovate

Protein Analysis

101

Amino Acids

11.41

Weight (kDa)

5.04

Isoelectric Point (pI)

55.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ovate	PF04844	56 - 99	5.4e-15	Transcriptional repressor, ovate

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0005069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04820
fragaria_vesca	FvH4_6g19870
malus_domestica	MD02G1258900.v1.1 MD07G1061800.v1.1 MD07G1061900.v1.1 MD12G1034200.v1.1 MD14G1035600.v1.1
prunus_persica	Prupe.2G071500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1
pyrus_communis	pycom07g04730 pycom12g03170 pycom14g03130
rosa_chinensis	RchiOBHm_Chr3g0475291
rosa_laevigata	RLG00000023854
rosa_multiflora	Rmu_ssc0000140.1_g000002
rosa_roxburghii	Rroxscaffold_6G00406410
rosa_rugosa	Rorug03G0147700
rosa_samantha	Rh3AG197700 Rh3BG228000 Rh3DG223200
rosa_wichuraiana	Rw3G017970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	78
AciI	CCGC	1 cut(s)	99
AclWI	GGATC	2 cut(s)	18, 180
AfaI	GTAC	1 cut(s)	140
AgsI	TTSAA	2 cut(s)	181, 271
AjuI	GAANNNNNNNTTGG	2 cut(s)	110, 142
AluBI	AGCT	2 cut(s)	60, 253
AluI	AGCT	2 cut(s)	60, 253
AlwI	GGATC	2 cut(s)	18, 180
ApeKI	GCWGC	1 cut(s)	60
AspLEI	GCGC	1 cut(s)	226
AspS9I	GGNCC	1 cut(s)	10
AsuHPI	GGTGA	1 cut(s)	97
AvaII	GGWCC	1 cut(s)	10
BauI	CACGAG	1 cut(s)	55
BbsI	GAAGAC	1 cut(s)	57
BbvI	GCAGC	1 cut(s)	47
BccI	CCATC	2 cut(s)	202, 255
BceAI	ACGGC	1 cut(s)	112
BisI	GCNGC	1 cut(s)	61
BlsI	GCNGC	1 cut(s)	62
Bme18I	GGWCC	1 cut(s)	10
BmgT120I	GGNCC	1 cut(s)	10
BpiI	GAAGAC	1 cut(s)	57
BsaAI	YACGTR	1 cut(s)	142
BsaJI	CCNNGG	1 cut(s)	13
BsaXI	ACNNNNNCTCC	4 cut(s)	122, 152, 161, 191
Bse118I	RCCGGY	1 cut(s)	155
BseDI	CCNNGG	1 cut(s)	13
BseGI	GGATG	1 cut(s)	266
BseRI	GAGGAG	3 cut(s)	117, 120, 218
BseXI	GCAGC	1 cut(s)	47
BsiSI	CCGG	2 cut(s)	47, 156
Bsp143I	GATC	2 cut(s)	23, 172
BspACI	CCGC	1 cut(s)	99
BspPI	GGATC	2 cut(s)	18, 180
BsrFI	RCCGGY	1 cut(s)	155
BssAI	RCCGGY	1 cut(s)	155
BssECI	CCNNGG	1 cut(s)	13
BssMI	GATC	2 cut(s)	23, 172
BssSI	CACGAG	1 cut(s)	55
Bst2BI	CACGAG	1 cut(s)	55
BstBAI	YACGTR	1 cut(s)	142
BstC8I	GCNNGC	1 cut(s)	157
BstF5I	GGATG	1 cut(s)	266
BstHHI	GCGC	1 cut(s)	226
BstKTI	GATC	2 cut(s)	26, 175
BstMBI	GATC	2 cut(s)	23, 172
BstV1I	GCAGC	1 cut(s)	47
BstV2I	GAAGAC	1 cut(s)	57
BstX2I	RGATCY	1 cut(s)	23
BstYI	RGATCY	1 cut(s)	23
BtsCI	GGATG	1 cut(s)	266
Cac8I	GCNNGC	1 cut(s)	157
CfoI	GCGC	1 cut(s)	226
Cfr10I	RCCGGY	1 cut(s)	155
Cfr13I	GGNCC	1 cut(s)	10
Csp6I	GTAC	1 cut(s)	139
CviAII	CATG	4 cut(s)	64, 160, 221, 293
CviJI	RGCY	6 cut(s)	34, 46, 60, 155, 253, 297
CviKI_1	RGCY	6 cut(s)	34, 46, 60, 155, 253, 297
CviQI	GTAC	1 cut(s)	139
DpnI	GATC	2 cut(s)	25, 174
DpnII	GATC	2 cut(s)	23, 172
EciI	GGCGGA	1 cut(s)	114
Eco47I	GGWCC	1 cut(s)	10
FaeI	CATG	4 cut(s)	67, 163, 224, 296
FaiI	YATR	6 cut(s)	65, 74, 161, 222, 294, 301
FatI	CATG	4 cut(s)	63, 159, 220, 292
FblI	GTMKAC	1 cut(s)	78
Fnu4HI	GCNGC	1 cut(s)	61
FokI	GGATG	1 cut(s)	273
Fsp4HI	GCNGC	1 cut(s)	61
GlaI	GCGC	1 cut(s)	225
GluI	GCNGC	1 cut(s)	61
HapII	CCGG	2 cut(s)	47, 156
HhaI	GCGC	1 cut(s)	226
Hin1II	CATG	4 cut(s)	67, 163, 224, 296
Hin6I	GCGC	1 cut(s)	224
HinP1I	GCGC	1 cut(s)	224
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HinfI	GANTC	3 cut(s)	118, 164, 289
HpaII	CCGG	2 cut(s)	47, 156
HphI	GGTGA	1 cut(s)	97
Hpy166II	GTNNAC	2 cut(s)	79, 277
Hpy188I	TCNGA	3 cut(s)	14, 28, 169
Hpy8I	GTNNAC	2 cut(s)	79, 277
Hpy99I	CGWCG	1 cut(s)	127
HpyAV	CCTTC	1 cut(s)	265
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	1 cut(s)	63
HpySE526I	ACGT	1 cut(s)	141
Hsp92II	CATG	4 cut(s)	67, 163, 224, 296
HspAI	GCGC	1 cut(s)	224
KroI	GCCGGC	1 cut(s)	155
KroNI	GCCGGC	1 cut(s)	157
Kzo9I	GATC	2 cut(s)	23, 172
LmnI	GCTCC	1 cut(s)	250
LpnPI	CCDG	2 cut(s)	60, 169
Lsp1109I	GCAGC	1 cut(s)	47
MaeII	ACGT	1 cut(s)	141
MalI	GATC	2 cut(s)	25, 174
MboI	GATC	2 cut(s)	23, 172
MboII	GAAGA	2 cut(s)	62, 298
MflI	RGATCY	1 cut(s)	23
MmeI	TCCRAC	1 cut(s)	108
MnlI	CCTC	8 cut(s)	8, 24, 95, 98, 124, 163, 186, 196
MroNI	GCCGGC	1 cut(s)	155
MseI	TTAA	1 cut(s)	228
MspI	CCGG	2 cut(s)	47, 156
NaeI	GCCGGC	1 cut(s)	157
NdeII	GATC	2 cut(s)	23, 172
NgoMIV	GCCGGC	1 cut(s)	155
NlaIII	CATG	4 cut(s)	67, 163, 224, 296
PdiI	GCCGGC	1 cut(s)	157
PfeI	GAWTC	3 cut(s)	118, 164, 289
PkrI	GCNGC	1 cut(s)	62
Ppu21I	YACGTR	1 cut(s)	142
PspPI	GGNCC	1 cut(s)	10
PsuI	RGATCY	1 cut(s)	23
RsaI	GTAC	1 cut(s)	140
RsaNI	GTAC	1 cut(s)	139
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	1 cut(s)	61
Sau3AI	GATC	2 cut(s)	23, 172
Sau96I	GGNCC	1 cut(s)	10
SetI	ASST	7 cut(s)	62, 73, 87, 144, 197, 255, 276
SinI	GGWCC	1 cut(s)	10
SsiI	CCGC	1 cut(s)	99
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	1 cut(s)	42
TfiI	GAWTC	3 cut(s)	118, 164, 289
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TseI	GCWGC	1 cut(s)	60
TspDTI	ATGAA	1 cut(s)	131
TspGWI	ACGGA	1 cut(s)	111
VpaK11BI	GGWCC	1 cut(s)	10
XmiI	GTMKAC	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.