Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0005069

Physical Location & Seq

Genomic Coordinates Forward (+)

3751599 .. 3752474

Gene Structure 876 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1034200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGAAGCTCCCTTTTCTCTCCAAGAACACATCAGAACTATCAAGATCTTCATCTTCTTCTTCCTCCCCATGGCCTTGGCCTTCTTGTGCTCAAACCAGAACCCTTTCTTTCAGAACAGGCAATGATATCTTCAAGACCATAAACTCAGCCTACTTTGACACCACAAACCCTACAACAGATTTGGTGTTGGTGGATAGCACACCGAACTCGTTCTTCACCAACTCATCATCTGACAAGTGTCCCATCTTCTCCACCGCCTCTGAAGACTCACGAGGCGGTGGAGGAGAAGACGCAATAGAGAGTGTGATTAAAGGGTTGAGGTCAGAGAGGCTCTTCTTTGAGCCAACTGGTCAGACAAGCTCTGTGTTAGTTGAGACCAAGGAGGCGGCGGCGGCGGCGGCAGCAACAGCTGATGATGGTGGTGATGGGGTTAATAATGTTATTCCATTCAAGGAGAGTGTGGCTTTGTCAATTGACTCACCAGACCCGATTGTGGATTTCAGAAAATCTATGGAGGAAATGGTGGAAGCTCATGGCTTGAAGGATTGGGAGAATCTTGAGGAGCTTTTGTGTTGGTATTTGAGGGTAAATGGTAAAAGCAACCATGGCTATATTGTTGGAGCTTTTGTCGATCTCTTGGTAGGTCTTGCATTTACTACTACCAGTAGTAAATCTTGTTCTTGTATTATTAACTCTCCTTCTTCTCCTTTCTCTAATTTTTACAATAGTATTACTACTTCTTCTTCGTCGTTGTCGTCATCGTCTTCTTCTGCGACTACTCCTTGTGTTTCCTCCGTAGAAGAAGAGTCTGAAAGTACTGCTACTACTCCATGTTTATCTTCATTGTTAGAAGGTGAAGAAGACCAGATTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ovate

Protein Analysis

292

Amino Acids

31.08

Weight (kDa)

4.43

Isoelectric Point (pI)

51.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ovate	PF04844	160 - 216	7.6e-24	Transcriptional repressor, ovate

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04820
fragaria_vesca	FvH4_6g19870
malus_domestica	MD02G1258900.v1.1 MD07G1061800.v1.1 MD07G1061900.v1.1 MD12G1034200.v1.1 MD14G1035600.v1.1
prunus_persica	Prupe.2G071500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1
pyrus_communis	pycom07g04730 pycom12g03170 pycom14g03130
rosa_chinensis	RchiOBHm_Chr3g0475291
rosa_laevigata	RLG00000023854
rosa_multiflora	Rmu_ssc0000140.1_g000002
rosa_roxburghii	Rroxscaffold_6G00406410
rosa_rugosa	Rorug03G0147700
rosa_samantha	Rh3AG197700 Rh3BG228000 Rh3DG223200
rosa_wichuraiana	Rw3G017970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	255, 276, 386, 389, 392, 395, 398
AcuI	CTGAAG	1 cut(s)	282
AfaI	GTAC	1 cut(s)	817
AfiI	CCNNNNNNNGG	2 cut(s)	69, 493
AgsI	TTSAA	3 cut(s)	133, 451, 541
AluBI	AGCT	6 cut(s)	7, 360, 410, 530, 565, 623
AluI	AGCT	6 cut(s)	7, 360, 410, 530, 565, 623
Alw21I	GWGCWC	1 cut(s)	91
Alw26I	GTCTC	1 cut(s)	368
AoxI	GGCC	2 cut(s)	71, 77
ApeKI	GCWGC	1 cut(s)	401
Asp700I	GAANNNNTTC	2 cut(s)	103, 209
AsuHPI	GGTGA	4 cut(s)	208, 434, 471, 866
BarI	GAAGNNNNNNTAC	2 cut(s)	721, 753
BauI	CACGAG	1 cut(s)	270
BbsI	GAAGAC	4 cut(s)	270, 294, 756, 867
Bbv12I	GWGCWC	1 cut(s)	91
BbvI	GCAGC	1 cut(s)	413
BccI	CCATC	3 cut(s)	251, 410, 419
BcoDI	GTCTC	1 cut(s)	368
BglII	AGATCT	1 cut(s)	44
BisI	GCNGC	6 cut(s)	387, 390, 393, 396, 399, 402
BlsI	GCNGC	6 cut(s)	388, 391, 394, 397, 400, 403
BmcAI	AGTACT	1 cut(s)	817
BoxI	GACNNNNGTC	1 cut(s)	237
BpiI	GAAGAC	4 cut(s)	270, 294, 756, 867
BpuEI	CTTGAG	1 cut(s)	578
BsaBI	GATNNNNATC	1 cut(s)	49
BsaI	GGTCTC	1 cut(s)	368
BsaJI	CCNNGG	4 cut(s)	68, 74, 378, 604
BsaXI	ACNNNNNCTCC	4 cut(s)	554, 584, 612, 642
Bsc4I	CCNNNNNNNGG	2 cut(s)	69, 493
Bse1I	ACTGG	2 cut(s)	352, 663
Bse3DI	GCAATG	1 cut(s)	127
Bse8I	GATNNNNATC	1 cut(s)	49
BseDI	CCNNGG	4 cut(s)	68, 74, 378, 604
BseJI	GATNNNNATC	1 cut(s)	49
BseLI	CCNNNNNNNGG	2 cut(s)	69, 493
BseMI	GCAATG	1 cut(s)	127
BseMII	CTCAG	1 cut(s)	159
BseNI	ACTGG	2 cut(s)	352, 663
BseRI	GAGGAG	2 cut(s)	297, 575
BseXI	GCAGC	1 cut(s)	413
BshFI	GGCC	2 cut(s)	73, 79
BsiHKAI	GWGCWC	1 cut(s)	91
BslFI	GGGAC	1 cut(s)	225
BslI	CCNNNNNNNGG	2 cut(s)	69, 493
BsmAI	GTCTC	1 cut(s)	368
BsmFI	GGGAC	1 cut(s)	225
BsnI	GGCC	2 cut(s)	73, 79
Bso31I	GGTCTC	1 cut(s)	368
Bsp1286I	GDGCHC	1 cut(s)	91
Bsp143I	GATC	2 cut(s)	44, 631
Bsp19I	CCATGG	2 cut(s)	68, 604
BspACI	CCGC	7 cut(s)	255, 276, 386, 389, 392, 395, 398
BspANI	GGCC	2 cut(s)	73, 79
BspCNI	CTCAG	1 cut(s)	158
BspQI	GCTCTTC	1 cut(s)	338
BspTNI	GGTCTC	1 cut(s)	368
BsrDI	GCAATG	1 cut(s)	127
BsrI	ACTGG	2 cut(s)	352, 663
BssECI	CCNNGG	4 cut(s)	68, 74, 378, 604
BssMI	GATC	2 cut(s)	44, 631
BssSI	CACGAG	1 cut(s)	270
BssT1I	CCWWGG	4 cut(s)	68, 74, 378, 604
Bst2BI	CACGAG	1 cut(s)	270
Bst6I	CTCTTC	2 cut(s)	338, 798
BstDEI	CTNAG	1 cut(s)	145
BstDSI	CCRYGG	2 cut(s)	68, 604
BstKTI	GATC	2 cut(s)	47, 634
BstMAI	GTCTC	1 cut(s)	368
BstMBI	GATC	2 cut(s)	44, 631
BstMWI	GCNNNNNNNGC	6 cut(s)	392, 395, 398, 401, 407, 606
BstPAI	GACNNNNGTC	1 cut(s)	237
BstV1I	GCAGC	1 cut(s)	413
BstV2I	GAAGAC	4 cut(s)	270, 294, 756, 867
BstX2I	RGATCY	1 cut(s)	44
BstXI	CCANNNNNNTGG	1 cut(s)	75
BstYI	RGATCY	1 cut(s)	44
BsuRI	GGCC	2 cut(s)	73, 79
BtgI	CCRYGG	2 cut(s)	68, 604
CseI	GACGC	1 cut(s)	299
Csp6I	GTAC	1 cut(s)	816
CviAII	CATG	4 cut(s)	69, 533, 605, 831
CviQI	GTAC	1 cut(s)	816
DdeI	CTNAG	1 cut(s)	145
DpnI	GATC	2 cut(s)	46, 633
DpnII	GATC	2 cut(s)	44, 631
Eam1104I	CTCTTC	2 cut(s)	338, 798
EarI	CTCTTC	2 cut(s)	338, 798
Eco130I	CCWWGG	4 cut(s)	68, 74, 378, 604
Eco31I	GGTCTC	1 cut(s)	368
Eco32I	GATATC	1 cut(s)	127
Eco57I	CTGAAG	1 cut(s)	282
EcoRV	GATATC	1 cut(s)	127
EcoT14I	CCWWGG	4 cut(s)	68, 74, 378, 604
ErhI	CCWWGG	4 cut(s)	68, 74, 378, 604
FaeI	CATG	4 cut(s)	72, 536, 608, 834
FaiI	YATR	7 cut(s)	70, 140, 512, 534, 606, 612, 832
FaqI	GGGAC	1 cut(s)	225
FatI	CATG	4 cut(s)	68, 532, 604, 830
Fnu4HI	GCNGC	6 cut(s)	387, 390, 393, 396, 399, 402
Fsp4HI	GCNGC	6 cut(s)	387, 390, 393, 396, 399, 402
GluI	GCNGC	6 cut(s)	387, 390, 393, 396, 399, 402
HaeIII	GGCC	2 cut(s)	73, 79
HgaI	GACGC	1 cut(s)	299
Hin1II	CATG	4 cut(s)	72, 536, 608, 834
HinfI	GANTC	4 cut(s)	266, 476, 553, 806
HphI	GGTGA	4 cut(s)	208, 434, 471, 866
Hpy188I	TCNGA	8 cut(s)	34, 113, 232, 262, 325, 354, 503, 811
Hpy188III	TCNNGA	4 cut(s)	42, 133, 270, 557
Hpy99I	CGWCG	1 cut(s)	751
HpyAV	CCTTC	4 cut(s)	90, 535, 708, 845
HpyCH4V	TGCA	1 cut(s)	650
HpyF10VI	GCNNNNNNNGC	6 cut(s)	392, 395, 398, 401, 407, 606
HpyF3I	CTNAG	1 cut(s)	145
Hsp92II	CATG	4 cut(s)	72, 536, 608, 834
Kzo9I	GATC	2 cut(s)	44, 631
LguI	GCTCTTC	1 cut(s)	338
LmnI	GCTCC	3 cut(s)	12, 562, 620
LpnPI	CCDG	5 cut(s)	102, 109, 333, 495, 676
Lsp1109I	GCAGC	1 cut(s)	413
MalI	GATC	2 cut(s)	46, 633
MboI	GATC	2 cut(s)	44, 631
MfeI	CAATTG	1 cut(s)	471
MflI	RGATCY	1 cut(s)	44
MhlI	GDGCHC	1 cut(s)	91
MluCI	AATT	2 cut(s)	471, 715
MlyI	GAGTC	3 cut(s)	260, 470, 815
MmeI	TCCRAC	1 cut(s)	598
MroXI	GAANNNNTTC	2 cut(s)	103, 209
MseI	TTAA	4 cut(s)	309, 432, 690, 870
MspA1I	CMGCKG	1 cut(s)	410
MunI	CAATTG	1 cut(s)	471
MwoI	GCNNNNNNNGC	6 cut(s)	392, 395, 398, 401, 407, 606
NcoI	CCATGG	2 cut(s)	68, 604
NdeII	GATC	2 cut(s)	44, 631
NlaIII	CATG	4 cut(s)	72, 536, 608, 834
PciSI	GCTCTTC	1 cut(s)	338
PcsI	WCGNNNNNNNCGW	1 cut(s)	752
PdmI	GAANNNNTTC	2 cut(s)	103, 209
PfeI	GAWTC	1 cut(s)	553
PkrI	GCNGC	6 cut(s)	388, 391, 394, 397, 400, 403
PleI	GAGTC	3 cut(s)	260, 470, 814
PpsI	GAGTC	3 cut(s)	260, 470, 814
PshAI	GACNNNNGTC	1 cut(s)	237
PsrI	GAACNNNNNNTAC	2 cut(s)	661, 693
PsuI	RGATCY	1 cut(s)	44
PvuII	CAGCTG	1 cut(s)	410
RsaI	GTAC	1 cut(s)	817
RsaNI	GTAC	1 cut(s)	816
SapI	GCTCTTC	1 cut(s)	338
SaqAI	TTAA	4 cut(s)	309, 432, 690, 870
SatI	GCNGC	6 cut(s)	387, 390, 393, 396, 399, 402
Sau3AI	GATC	2 cut(s)	44, 631
ScaI	AGTACT	1 cut(s)	817
SchI	GAGTC	3 cut(s)	260, 470, 815
SduI	GDGCHC	1 cut(s)	91
SetI	ASST	9 cut(s)	9, 323, 362, 412, 532, 567, 625, 646, 856
SmlI	CTYRAG	1 cut(s)	557
SmoI	CTYRAG	1 cut(s)	557
Sse9I	AATT	2 cut(s)	471, 715
SsiI	CCGC	7 cut(s)	255, 276, 386, 389, 392, 395, 398
StyI	CCWWGG	4 cut(s)	68, 74, 378, 604
TaqI	TCGA	1 cut(s)	630
TasI	AATT	2 cut(s)	471, 715
TatI	WGTACW	1 cut(s)	815
TauI	GCSGC	5 cut(s)	389, 392, 395, 398, 401
TfiI	GAWTC	1 cut(s)	553
Tru1I	TTAA	4 cut(s)	309, 432, 690, 870
Tru9I	TTAA	4 cut(s)	309, 432, 690, 870
TseI	GCWGC	1 cut(s)	401
TspDTI	ATGAA	3 cut(s)	17, 39, 831
TspGWI	ACGGA	1 cut(s)	784
XmnI	GAANNNNTTC	2 cut(s)	103, 209
ZrmI	AGTACT	1 cut(s)	817

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.