Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0005069

Physical Location & Seq

Genomic Coordinates Forward (+)

3196341 .. 3197246

Gene Structure 906 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1035600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGGCAAGAAAATGAAGCTCCCTTTTCTCTCCAAGAACACATCAGAAATATCAAGATCTTCCTCTTCTTCTTCCTCCTCATGGCCCTGGCCTTCTTGTACTCAAACCAGAACCATTTCTTTCAGAACAGGCAATGATATTTTCAAGACCATAAACTCAGCCTACTTCGACACTACAAACCCTACAACAGATTTGGCGTTGGTGGATAGCACACCAGACTCGGTCTTCACGAACTCGTCATCTCACAAGTGTCCCAGCTTCTCCACCGCCTCTAAAGATTCTAGAGGCGGTGGAGGAGCAGGAGGAGGGGACGCAATAGAGAGTGTGATTAAAGGGTTGAGGTCAGAGAGGCTCTTCTTTGAGCCAGCTGGTCAGACAAGCTCTGTGCTAGTGGAGGCGGCGCCAGCAGCACCAGATGATGATGGTGGTAATGGGGTTAATAATGTCATTCCATTCAAGGAGAGCGTGGCTTTGTCAATGGACTCGGCAGACCCGATTGTAGATTTTAGAAAATCTATGGAGGAAATGGTGGAAGCTCATGGTTTGAAGGACTGGGAGAATCTTGAGGAGCTTTTGTGCTGGTACTTAAGGGTGAATGGTAAGAGCAATCATGGATATATTGTTGGAGCTTTTGTTGATCTCTTGGTAGGTCTATCATTTACTACCACTAGTAGGAATTCTTGTTCTTGTGTTATTAACTCTCCTTCTTCTCCCTTATCTAATTTTTACAATAGTATTACTACTTCTTCTTCGTCGCTGTCGTCGTCTTCTTCTTCTGCTACTACTCCTTGTATTTCCTCCATAGAAGAAGAGTCTGAAAGTACTGCCACTACTCCTTGTTTATCTTCATTGTTAGAAGGTGAAGAAGATCAGATTAAGGAAGAAGAAGCTGACGAGGACGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ovate

Protein Analysis

302

Amino Acids

32.09

Weight (kDa)

4.47

Isoelectric Point (pI)

56.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ovate	PF04844	162 - 218	1e-23	Transcriptional repressor, ovate

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04820
fragaria_vesca	FvH4_6g19870
malus_domestica	MD02G1258900.v1.1 MD07G1061800.v1.1 MD07G1061900.v1.1 MD12G1034200.v1.1 MD14G1035600.v1.1
prunus_persica	Prupe.2G071500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1
pyrus_communis	pycom07g04730 pycom12g03170 pycom14g03130
rosa_chinensis	RchiOBHm_Chr3g0475291
rosa_laevigata	RLG00000023854
rosa_multiflora	Rmu_ssc0000140.1_g000002
rosa_roxburghii	Rroxscaffold_6G00406410
rosa_rugosa	Rorug03G0147700
rosa_samantha	Rh3AG197700 Rh3BG228000 Rh3DG223200
rosa_wichuraiana	Rw3G017970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	400
AciI	CCGC	3 cut(s)	267, 288, 398
AcsI	RAATTY	1 cut(s)	676
AcyI	GRCGYC	1 cut(s)	401
AfaI	GTAC	3 cut(s)	100, 584, 823
AfiI	CCNNNNNNNGG	2 cut(s)	81, 672
AflII	CTTAAG	1 cut(s)	586
AgsI	TTSAA	3 cut(s)	145, 457, 547
AhlI	ACTAGT	1 cut(s)	668
AjnI	CCWGG	1 cut(s)	86
AloI	GAACNNNNNNTCC	2 cut(s)	667, 699
AluBI	AGCT	8 cut(s)	19, 258, 368, 381, 536, 571, 629, 890
AluI	AGCT	8 cut(s)	19, 258, 368, 381, 536, 571, 629, 890
AoxI	GGCC	2 cut(s)	83, 89
ApeKI	GCWGC	1 cut(s)	407
ApoI	RAATTY	1 cut(s)	676
Asp700I	GAANNNNTTC	1 cut(s)	115
AspLEI	GCGC	1 cut(s)	403
AspS9I	GGNCC	1 cut(s)	84
AsuHPI	GGTGA	2 cut(s)	604, 872
BanI	GGYRCC	1 cut(s)	400
BarI	GAAGNNNNNNTAC	2 cut(s)	727, 759
BbsI	GAAGAC	2 cut(s)	217, 759
BbvI	GCAGC	1 cut(s)	419
BccI	CCATC	1 cut(s)	416
BciT130I	CCWGG	1 cut(s)	88
BcuI	ACTAGT	1 cut(s)	668
BfaI	CTAG	3 cut(s)	282, 389, 669
BfoI	RGCGCY	1 cut(s)	404
BfrI	CTTAAG	1 cut(s)	586
BglII	AGATCT	1 cut(s)	56
BisI	GCNGC	2 cut(s)	399, 408
BlsI	GCNGC	2 cut(s)	400, 409
BmcAI	AGTACT	1 cut(s)	823
Bme1390I	CCNGG	1 cut(s)	88
BmgT120I	GGNCC	1 cut(s)	84
BmiI	GGNNCC	1 cut(s)	402
BmrFI	CCNGG	1 cut(s)	88
BmrI	ACTGGG	1 cut(s)	562
BmuI	ACTGGG	1 cut(s)	562
BpiI	GAAGAC	2 cut(s)	217, 759
BpuEI	CTTGAG	1 cut(s)	584
BsaHI	GRCGYC	1 cut(s)	401
BsaJI	CCNNGG	1 cut(s)	86
BsaXI	ACNNNNNCTCC	4 cut(s)	560, 590, 618, 648
Bsc4I	CCNNNNNNNGG	2 cut(s)	81, 672
Bse1I	ACTGG	1 cut(s)	557
Bse3DI	GCAATG	1 cut(s)	139
BseBI	CCWGG	1 cut(s)	88
BseDI	CCNNGG	1 cut(s)	86
BseLI	CCNNNNNNNGG	2 cut(s)	81, 672
BseMI	GCAATG	1 cut(s)	139
BseMII	CTCAG	1 cut(s)	171
BseNI	ACTGG	1 cut(s)	557
BseRI	GAGGAG	4 cut(s)	67, 309, 318, 581
BseXI	GCAGC	1 cut(s)	419
BseYI	CCCAGC	1 cut(s)	254
BshFI	GGCC	2 cut(s)	85, 91
BshNI	GGYRCC	1 cut(s)	400
BslFI	GGGAC	2 cut(s)	237, 323
BslI	CCNNNNNNNGG	2 cut(s)	81, 672
BsmFI	GGGAC	2 cut(s)	237, 323
BsnI	GGCC	2 cut(s)	85, 91
Bsp143I	GATC	3 cut(s)	56, 637, 868
BspACI	CCGC	3 cut(s)	267, 288, 398
BspANI	GGCC	2 cut(s)	85, 91
BspCNI	CTCAG	1 cut(s)	170
BspLI	GGNNCC	1 cut(s)	402
BspQI	GCTCTTC	1 cut(s)	359
BspT107I	GGYRCC	1 cut(s)	400
BspTI	CTTAAG	1 cut(s)	586
BsrDI	GCAATG	1 cut(s)	139
BsrI	ACTGG	1 cut(s)	557
BssECI	CCNNGG	1 cut(s)	86
BssMI	GATC	3 cut(s)	56, 637, 868
BssNI	GRCGYC	1 cut(s)	401
Bst2UI	CCWGG	1 cut(s)	88
Bst6I	CTCTTC	3 cut(s)	70, 359, 804
BstACI	GRCGYC	1 cut(s)	401
BstAFI	CTTAAG	1 cut(s)	586
BstC8I	GCNNGC	2 cut(s)	366, 405
BstDEI	CTNAG	1 cut(s)	157
BstH2I	RGCGCY	1 cut(s)	404
BstHHI	GCGC	1 cut(s)	403
BstKTI	GATC	3 cut(s)	59, 640, 871
BstMBI	GATC	3 cut(s)	56, 637, 868
BstMWI	GCNNNNNNNGC	2 cut(s)	404, 407
BstNI	CCWGG	1 cut(s)	88
BstSCI	CCNGG	1 cut(s)	86
BstV1I	GCAGC	1 cut(s)	419
BstV2I	GAAGAC	2 cut(s)	217, 759
BstX2I	RGATCY	1 cut(s)	56
BstYI	RGATCY	1 cut(s)	56
BsuRI	GGCC	2 cut(s)	85, 91
Cac8I	GCNNGC	2 cut(s)	366, 405
CfoI	GCGC	1 cut(s)	403
Cfr13I	GGNCC	1 cut(s)	84
CseI	GACGC	1 cut(s)	320
Csp6I	GTAC	3 cut(s)	99, 583, 822
CviAII	CATG	3 cut(s)	81, 539, 611
CviQI	GTAC	3 cut(s)	99, 583, 822
DdeI	CTNAG	1 cut(s)	157
DinI	GGCGCC	1 cut(s)	402
DpnI	GATC	3 cut(s)	58, 639, 870
DpnII	GATC	3 cut(s)	56, 637, 868
Eam1104I	CTCTTC	3 cut(s)	70, 359, 804
EarI	CTCTTC	3 cut(s)	70, 359, 804
EcoRI	GAATTC	1 cut(s)	676
EcoRII	CCWGG	1 cut(s)	86
EgeI	GGCGCC	1 cut(s)	402
EheI	GGCGCC	1 cut(s)	402
FaeI	CATG	3 cut(s)	84, 542, 614
FaiI	YATR	7 cut(s)	82, 152, 518, 540, 612, 618, 803
FaqI	GGGAC	2 cut(s)	237, 323
FatI	CATG	3 cut(s)	80, 538, 610
Fnu4HI	GCNGC	2 cut(s)	399, 408
Fsp4HI	GCNGC	2 cut(s)	399, 408
FspBI	CTAG	3 cut(s)	282, 389, 669
GlaI	GCGC	1 cut(s)	402
GluI	GCNGC	2 cut(s)	399, 408
GsaI	CCCAGC	1 cut(s)	258
HaeII	RGCGCY	1 cut(s)	404
HaeIII	GGCC	2 cut(s)	85, 91
HgaI	GACGC	1 cut(s)	320
HhaI	GCGC	1 cut(s)	403
Hin1I	GRCGYC	1 cut(s)	401
Hin1II	CATG	3 cut(s)	84, 542, 614
Hin6I	GCGC	1 cut(s)	401
HinP1I	GCGC	1 cut(s)	401
HinfI	GANTC	5 cut(s)	218, 278, 482, 559, 812
HphI	GGTGA	2 cut(s)	604, 872
Hpy188I	TCNGA	6 cut(s)	46, 125, 346, 375, 817, 873
Hpy188III	TCNNGA	5 cut(s)	54, 145, 229, 282, 563
Hpy99I	CGWCG	2 cut(s)	757, 766
HpyAV	CCTTC	4 cut(s)	102, 541, 714, 851
HpyF10VI	GCNNNNNNNGC	2 cut(s)	404, 407
HpyF3I	CTNAG	1 cut(s)	157
Hsp92I	GRCGYC	1 cut(s)	401
Hsp92II	CATG	3 cut(s)	84, 542, 614
HspAI	GCGC	1 cut(s)	401
KasI	GGCGCC	1 cut(s)	400
Kzo9I	GATC	3 cut(s)	56, 637, 868
LguI	GCTCTTC	1 cut(s)	359
LmnI	GCTCC	4 cut(s)	24, 296, 568, 626
Lsp1109I	GCAGC	1 cut(s)	419
MaeI	CTAG	3 cut(s)	282, 389, 669
MalI	GATC	3 cut(s)	58, 639, 870
MboI	GATC	3 cut(s)	56, 637, 868
MflI	RGATCY	1 cut(s)	56
MluCI	AATT	2 cut(s)	676, 721
Mly113I	GGCGCC	1 cut(s)	401
MlyI	GAGTC	3 cut(s)	212, 476, 821
MmeI	TCCRAC	1 cut(s)	604
MroXI	GAANNNNTTC	1 cut(s)	115
MseI	TTAA	5 cut(s)	330, 438, 587, 696, 876
MspA1I	CMGCKG	1 cut(s)	368
MspCI	CTTAAG	1 cut(s)	586
MspR9I	CCNGG	1 cut(s)	88
MvaI	CCWGG	1 cut(s)	88
MwoI	GCNNNNNNNGC	2 cut(s)	404, 407
NarI	GGCGCC	1 cut(s)	401
NdeII	GATC	3 cut(s)	56, 637, 868
NlaIII	CATG	3 cut(s)	84, 542, 614
NlaIV	GGNNCC	1 cut(s)	402
NmeAIII	GCCGAG	1 cut(s)	464
PciSI	GCTCTTC	1 cut(s)	359
PcsI	WCGNNNNNNNCGW	4 cut(s)	227, 491, 758, 761
PdmI	GAANNNNTTC	1 cut(s)	115
PfeI	GAWTC	2 cut(s)	278, 559
PflFI	GACNNNGTC	1 cut(s)	221
PkrI	GCNGC	2 cut(s)	400, 409
PleI	GAGTC	3 cut(s)	212, 476, 820
PluTI	GGCGCC	1 cut(s)	404
PpsI	GAGTC	3 cut(s)	212, 476, 820
Psp6I	CCWGG	1 cut(s)	86
PspFI	CCCAGC	1 cut(s)	254
PspGI	CCWGG	1 cut(s)	86
PspN4I	GGNNCC	1 cut(s)	402
PspPI	GGNCC	1 cut(s)	84
PsuI	RGATCY	1 cut(s)	56
PsyI	GACNNNGTC	1 cut(s)	221
PvuII	CAGCTG	1 cut(s)	368
RsaI	GTAC	3 cut(s)	100, 584, 823
RsaNI	GTAC	3 cut(s)	99, 583, 822
SapI	GCTCTTC	1 cut(s)	359
SaqAI	TTAA	5 cut(s)	330, 438, 587, 696, 876
SatI	GCNGC	2 cut(s)	399, 408
Sau3AI	GATC	3 cut(s)	56, 637, 868
Sau96I	GGNCC	1 cut(s)	84
ScaI	AGTACT	1 cut(s)	823
SchI	GAGTC	3 cut(s)	212, 476, 821
ScrFI	CCNGG	1 cut(s)	88
SfoI	GGCGCC	1 cut(s)	402
SmlI	CTYRAG	2 cut(s)	563, 586
SmoI	CTYRAG	2 cut(s)	563, 586
SpeI	ACTAGT	1 cut(s)	668
Sse9I	AATT	2 cut(s)	676, 721
SsiI	CCGC	3 cut(s)	267, 288, 398
SspDI	GGCGCC	1 cut(s)	400
SspMI	CTAG	3 cut(s)	282, 389, 669
StyD4I	CCNGG	1 cut(s)	86
TaqI	TCGA	1 cut(s)	168
TaqII	GACCGA	1 cut(s)	211
TasI	AATT	2 cut(s)	676, 721
TatI	WGTACW	2 cut(s)	98, 821
TauI	GCSGC	1 cut(s)	401
TfiI	GAWTC	2 cut(s)	278, 559
Tru1I	TTAA	5 cut(s)	330, 438, 587, 696, 876
Tru9I	TTAA	5 cut(s)	330, 438, 587, 696, 876
TseI	GCWGC	1 cut(s)	407
TspDTI	ATGAA	2 cut(s)	29, 837
Tth111I	GACNNNGTC	1 cut(s)	221
Vha464I	CTTAAG	1 cut(s)	586
XapI	RAATTY	1 cut(s)	676
XbaI	TCTAGA	1 cut(s)	281
XmnI	GAANNNNTTC	1 cut(s)	115
XspI	CTAG	3 cut(s)	282, 389, 669
ZrmI	AGTACT	1 cut(s)	823

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.