Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005069

Physical Location & Seq

Genomic Coordinates Forward (+)

13340659 .. 13342267

Gene Structure 1609 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g19870.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGAAGCTTCTTCCTTCTTCTCTGTTCAAGAACACAGCACCAGCACCAGAGCCAAAGTCTTCTTCTTCCTCTTGGCCCTGGCCTTCTTGTACCCAAACCAGGACCATCTCCTTCAGAATTCCCGGAAACGATATGTTCAAGACCATAAACTCGGCTTACTTCGACACCAACACACCGGAATCCTTCTTCACCAACTCCTCCGAGGGGTGTGCGAGTTTCTCCACAACAGTGTCTGAAGAAGACTCCTCGGGCGGAGGAGGAGATCCGATAGAGACTGTGATCAACAAAGGGTTGAGATCAGAGCGGCTCTTCTTCGATCCTGGTGAGACCAGCTCTATTTTAGACAAGGACTCTATCAAGGCTCGTGAAGAAGAAGAAGAAGAAGAAGAAGACGATGATGGGGTTGATGATGAACTTGCTGGTGGTGATGATAACATTCCGTTCAAAGAGAGTGTGGCTTTGTCCATGGACTCGCCGGACCCTTATGTGGATTTCAGAAAATCCATGGAGGAAATGGTGGAAGCTCATGGTTTGAAGGACTGGGAACATCTTGAAGAGCTTCTGTGTTGGTATTTGCGGGTCAATGGAAAATCAAACCATGGATATATAGTTGGAGCTTTCGTTGATCTTTTGGTAGGTCTCGCATTCAGCACTAGCATTCCTCCTCCTTCTTGTTCATGTAGTGAGTACTCTCCTTCTACTCCTTTGTCTTTTTACACCAGTACTACTTCCTGTTCATCTTCTTCTACCTCCACTCCTTGTGTGTCCTCCATTGGACCCGAGGACGGATCAGAAATGAGTACCAGCACCATTCCCTATTTGTCTTCCCTGTTAGAAGCTGAGGAAGAGATTAACGAAGAAGATGACGATGATGATGATGGTGCTTCATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ovate

Protein Analysis

298

Amino Acids

32.28

Weight (kDa)

4.05

Isoelectric Point (pI)

61.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ovate	PF04844	158 - 214	6.7e-25	Transcriptional repressor, ovate

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04820
fragaria_vesca	FvH4_6g19870
malus_domestica	MD02G1258900.v1.1 MD07G1061800.v1.1 MD07G1061900.v1.1 MD12G1034200.v1.1 MD14G1035600.v1.1
prunus_persica	Prupe.2G071500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1
pyrus_communis	pycom07g04730 pycom12g03170 pycom14g03130
rosa_chinensis	RchiOBHm_Chr3g0475291
rosa_laevigata	RLG00000023854
rosa_multiflora	Rmu_ssc0000140.1_g000002
rosa_roxburghii	Rroxscaffold_6G00406410
rosa_rugosa	Rorug03G0147700
rosa_samantha	Rh3AG197700 Rh3BG228000 Rh3DG223200
rosa_wichuraiana	Rw3G017970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	304
AciI	CCGC	3 cut(s)	252, 304, 577
AclWI	GGATC	3 cut(s)	257, 311, 796
AcsI	RAATTY	1 cut(s)	117
AcuI	CTGAAG	2 cut(s)	97, 255
AfaI	GTAC	4 cut(s)	91, 689, 724, 802
AfiI	CCNNNNNNNGG	4 cut(s)	99, 204, 487, 785
AgsI	TTSAA	5 cut(s)	28, 139, 445, 535, 554
AjnI	CCWGG	3 cut(s)	77, 98, 319
AjuI	GAANNNNNNNTTGG	2 cut(s)	46, 78
AleI	CACNNNNGTG	1 cut(s)	227
AluBI	AGCT	6 cut(s)	7, 333, 524, 559, 617, 839
AluI	AGCT	6 cut(s)	7, 333, 524, 559, 617, 839
Alw26I	GTCTC	3 cut(s)	266, 320, 644
AlwI	GGATC	3 cut(s)	257, 311, 796
AlwNI	CAGNNNCTG	1 cut(s)	233
Ama87I	CYCGRG	2 cut(s)	247, 779
AoxI	GGCC	2 cut(s)	74, 80
ApoI	RAATTY	1 cut(s)	117
Asp700I	GAANNNNTTC	1 cut(s)	558
AspS9I	GGNCC	4 cut(s)	75, 102, 478, 776
AsuC2I	CCSGG	1 cut(s)	123
AsuHPI	GGTGA	3 cut(s)	181, 335, 437
AvaI	CYCGRG	2 cut(s)	247, 779
AvaII	GGWCC	3 cut(s)	102, 478, 776
BauI	CACGAG	1 cut(s)	363
BbsI	GAAGAC	4 cut(s)	51, 246, 396, 816
BbvCI	CCTCAGC	1 cut(s)	840
BccI	CCATC	3 cut(s)	113, 392, 872
BcgI	CGANNNNNNTGC	2 cut(s)	191, 225
BciT130I	CCWGG	3 cut(s)	79, 100, 321
BclI	TGATCA	1 cut(s)	279
BcnI	CCSGG	1 cut(s)	123
BcoDI	GTCTC	3 cut(s)	266, 320, 644
BfaI	CTAG	1 cut(s)	654
BisI	GCNGC	1 cut(s)	305
BlsI	GCNGC	1 cut(s)	306
BmcAI	AGTACT	2 cut(s)	689, 724
Bme1390I	CCNGG	4 cut(s)	79, 100, 123, 321
Bme18I	GGWCC	3 cut(s)	102, 478, 776
BmeT110I	CYCGRG	2 cut(s)	247, 779
BmgT120I	GGNCC	4 cut(s)	75, 102, 478, 776
BmiI	GGNNCC	2 cut(s)	480, 778
BmrFI	CCNGG	4 cut(s)	79, 100, 123, 321
BmrI	ACTGGG	1 cut(s)	550
BmuI	ACTGGG	1 cut(s)	550
BpiI	GAAGAC	4 cut(s)	51, 246, 396, 816
BplI	GAGNNNNNCTC	2 cut(s)	317, 349
Bpu10I	CCTNAGC	1 cut(s)	840
BpuMI	CCSGG	1 cut(s)	123
BsaI	GGTCTC	2 cut(s)	320, 644
BsaJI	CCNNGG	7 cut(s)	77, 201, 246, 465, 504, 598, 780
BsaWI	WCCGGW	1 cut(s)	175
BsaXI	ACNNNNNCTCC	4 cut(s)	606, 636, 739, 769
Bsc4I	CCNNNNNNNGG	4 cut(s)	99, 204, 487, 785
Bse1I	ACTGG	2 cut(s)	545, 720
BseBI	CCWGG	3 cut(s)	79, 100, 321
BseDI	CCNNGG	7 cut(s)	77, 201, 246, 465, 504, 598, 780
BseLI	CCNNNNNNNGG	4 cut(s)	99, 204, 487, 785
BseMII	CTCAG	1 cut(s)	831
BseNI	ACTGG	2 cut(s)	545, 720
BseRI	GAGGAG	5 cut(s)	187, 235, 270, 273, 654
BshFI	GGCC	2 cut(s)	76, 82
BsiHKCI	CYCGRG	2 cut(s)	247, 779
BsiSI	CCGG	3 cut(s)	123, 176, 476
BslI	CCNNNNNNNGG	4 cut(s)	99, 204, 487, 785
BsmAI	GTCTC	3 cut(s)	266, 320, 644
BsmI	GAATGC	2 cut(s)	644, 657
BsnI	GGCC	2 cut(s)	76, 82
Bso31I	GGTCTC	2 cut(s)	320, 644
BsoBI	CYCGRG	2 cut(s)	247, 779
Bsp143I	GATC	6 cut(s)	262, 279, 296, 316, 625, 788
Bsp19I	CCATGG	3 cut(s)	465, 504, 598
BspACI	CCGC	3 cut(s)	252, 304, 577
BspANI	GGCC	2 cut(s)	76, 82
BspCNI	CTCAG	1 cut(s)	832
BspLI	GGNNCC	2 cut(s)	480, 778
BspPI	GGATC	3 cut(s)	257, 311, 796
BspQI	GCTCTTC	2 cut(s)	314, 549
BspTNI	GGTCTC	2 cut(s)	320, 644
BsrBI	CCGCTC	1 cut(s)	304
BsrI	ACTGG	2 cut(s)	545, 720
BssECI	CCNNGG	7 cut(s)	77, 201, 246, 465, 504, 598, 780
BssMI	GATC	6 cut(s)	262, 279, 296, 316, 625, 788
BssSI	CACGAG	1 cut(s)	363
BssT1I	CCWWGG	3 cut(s)	465, 504, 598
Bst2BI	CACGAG	1 cut(s)	363
Bst2UI	CCWGG	3 cut(s)	79, 100, 321
Bst4CI	ACNGT	2 cut(s)	229, 277
Bst6I	CTCTTC	3 cut(s)	314, 549, 840
BstDEI	CTNAG	2 cut(s)	840, 891
BstDSI	CCRYGG	3 cut(s)	465, 504, 598
BstKTI	GATC	6 cut(s)	265, 282, 299, 319, 628, 791
BstMAI	GTCTC	3 cut(s)	266, 320, 644
BstMBI	GATC	6 cut(s)	262, 279, 296, 316, 625, 788
BstNI	CCWGG	3 cut(s)	79, 100, 321
BstSCI	CCNGG	4 cut(s)	77, 98, 121, 319
BstV2I	GAAGAC	4 cut(s)	51, 246, 396, 816
BstX2I	RGATCY	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	262
BsuRI	GGCC	2 cut(s)	76, 82
BtgI	CCRYGG	3 cut(s)	465, 504, 598
BtsIMutI	CAGTG	1 cut(s)	234
CaiI	CAGNNNCTG	1 cut(s)	233
Cfr13I	GGNCC	4 cut(s)	75, 102, 478, 776
Csp6I	GTAC	4 cut(s)	90, 688, 723, 801
CviAII	CATG	5 cut(s)	466, 505, 527, 599, 678
CviQI	GTAC	4 cut(s)	90, 688, 723, 801
DdeI	CTNAG	2 cut(s)	840, 891
DpnI	GATC	6 cut(s)	264, 281, 298, 318, 627, 790
DpnII	GATC	6 cut(s)	262, 279, 296, 316, 625, 788
Eam1104I	CTCTTC	3 cut(s)	314, 549, 840
EarI	CTCTTC	3 cut(s)	314, 549, 840
EciI	GGCGGA	1 cut(s)	267
Eco130I	CCWWGG	3 cut(s)	465, 504, 598
Eco31I	GGTCTC	2 cut(s)	320, 644
Eco47I	GGWCC	3 cut(s)	102, 478, 776
Eco57I	CTGAAG	2 cut(s)	97, 255
Eco88I	CYCGRG	2 cut(s)	247, 779
EcoRI	GAATTC	1 cut(s)	117
EcoRII	CCWGG	3 cut(s)	77, 98, 319
EcoT14I	CCWWGG	3 cut(s)	465, 504, 598
ErhI	CCWWGG	3 cut(s)	465, 504, 598
FaeI	CATG	5 cut(s)	469, 508, 530, 602, 681
FatI	CATG	5 cut(s)	465, 504, 526, 598, 677
FauI	CCCGC	1 cut(s)	570
FbaI	TGATCA	1 cut(s)	279
Fnu4HI	GCNGC	1 cut(s)	305
Fsp4HI	GCNGC	1 cut(s)	305
FspBI	CTAG	1 cut(s)	654
GluI	GCNGC	1 cut(s)	305
HaeIII	GGCC	2 cut(s)	76, 82
HapII	CCGG	3 cut(s)	123, 176, 476
Hin1II	CATG	5 cut(s)	469, 508, 530, 602, 681
HindIII	AAGCTT	1 cut(s)	5
HinfI	GANTC	4 cut(s)	179, 242, 350, 470
HpaII	CCGG	3 cut(s)	123, 176, 476
HphI	GGTGA	3 cut(s)	181, 335, 437
Hpy188I	TCNGA	7 cut(s)	116, 202, 235, 267, 301, 497, 793
Hpy188III	TCNNGA	4 cut(s)	28, 139, 365, 551
HpyAV	CCTTC	7 cut(s)	24, 93, 121, 193, 529, 678, 705
HpyCH4III	ACNGT	2 cut(s)	229, 277
HpyF3I	CTNAG	2 cut(s)	840, 891
Hsp92II	CATG	5 cut(s)	469, 508, 530, 602, 681
Ksp22I	TGATCA	1 cut(s)	279
Kzo9I	GATC	6 cut(s)	262, 279, 296, 316, 625, 788
LguI	GCTCTTC	2 cut(s)	314, 549
LmnI	GCTCC	1 cut(s)	614
MaeI	CTAG	1 cut(s)	654
MalI	GATC	6 cut(s)	264, 281, 298, 318, 627, 790
MbiI	CCGCTC	1 cut(s)	304
MboI	GATC	6 cut(s)	262, 279, 296, 316, 625, 788
MflI	RGATCY	1 cut(s)	262
MluCI	AATT	1 cut(s)	117
MlyI	GAGTC	3 cut(s)	236, 344, 464
MmeI	TCCRAC	1 cut(s)	592
MroXI	GAANNNNTTC	1 cut(s)	558
MseI	TTAA	1 cut(s)	852
MslI	CAYNNNNRTG	1 cut(s)	227
MspI	CCGG	3 cut(s)	123, 176, 476
MspR9I	CCNGG	4 cut(s)	79, 100, 123, 321
Mva1269I	GAATGC	2 cut(s)	644, 657
MvaI	CCWGG	3 cut(s)	79, 100, 321
NciI	CCSGG	1 cut(s)	123
NcoI	CCATGG	3 cut(s)	465, 504, 598
NdeII	GATC	6 cut(s)	262, 279, 296, 316, 625, 788
NlaIII	CATG	5 cut(s)	469, 508, 530, 602, 681
NlaIV	GGNNCC	2 cut(s)	480, 778
NmeAIII	GCCGAG	1 cut(s)	131
OliI	CACNNNNGTG	1 cut(s)	227
PciSI	GCTCTTC	2 cut(s)	314, 549
PctI	GAATGC	2 cut(s)	644, 657
PdmI	GAANNNNTTC	1 cut(s)	558
PfeI	GAWTC	1 cut(s)	179
PfoI	TCCNGGA	1 cut(s)	121
PkrI	GCNGC	1 cut(s)	306
PleI	GAGTC	3 cut(s)	236, 344, 464
PpsI	GAGTC	3 cut(s)	236, 344, 464
Psp6I	CCWGG	3 cut(s)	77, 98, 319
PspGI	CCWGG	3 cut(s)	77, 98, 319
PspN4I	GGNNCC	2 cut(s)	480, 778
PspPI	GGNCC	4 cut(s)	75, 102, 478, 776
PstNI	CAGNNNCTG	1 cut(s)	233
PsuI	RGATCY	1 cut(s)	262
RsaI	GTAC	4 cut(s)	91, 689, 724, 802
RsaNI	GTAC	4 cut(s)	90, 688, 723, 801
RseI	CAYNNNNRTG	1 cut(s)	227
SapI	GCTCTTC	2 cut(s)	314, 549
SaqAI	TTAA	1 cut(s)	852
SatI	GCNGC	1 cut(s)	305
Sau3AI	GATC	6 cut(s)	262, 279, 296, 316, 625, 788
Sau96I	GGNCC	4 cut(s)	75, 102, 478, 776
ScaI	AGTACT	2 cut(s)	689, 724
SchI	GAGTC	3 cut(s)	236, 344, 464
ScrFI	CCNGG	4 cut(s)	79, 100, 123, 321
SetI	ASST	8 cut(s)	9, 335, 526, 561, 619, 640, 752, 841
SinI	GGWCC	3 cut(s)	102, 478, 776
SmiMI	CAYNNNNRTG	1 cut(s)	227
Sse9I	AATT	1 cut(s)	117
SsiI	CCGC	3 cut(s)	252, 304, 577
SspMI	CTAG	1 cut(s)	654
StyD4I	CCNGG	4 cut(s)	77, 98, 121, 319
StyI	CCWWGG	3 cut(s)	465, 504, 598
TaaI	ACNGT	2 cut(s)	229, 277
TaqI	TCGA	2 cut(s)	162, 315
TasI	AATT	1 cut(s)	117
TatI	WGTACW	2 cut(s)	687, 722
TauI	GCSGC	1 cut(s)	307
TfiI	GAWTC	1 cut(s)	179
Tru1I	TTAA	1 cut(s)	852
Tru9I	TTAA	1 cut(s)	852
TscAI	CASTG	1 cut(s)	234
TspDTI	ATGAA	5 cut(s)	17, 426, 666, 726, 876
TspGWI	ACGGA	2 cut(s)	429, 801
TspRI	CASTG	1 cut(s)	234
VpaK11BI	GGWCC	3 cut(s)	102, 478, 776
XapI	RAATTY	1 cut(s)	117
XcmI	CCANNNNNNNNNTGG	1 cut(s)	511
XmnI	GAANNNNTTC	1 cut(s)	558
XspI	CTAG	1 cut(s)	654
ZrmI	AGTACT	2 cut(s)	689, 724

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.