Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0005069

Physical Location & Seq

Genomic Coordinates Forward (+)

10860506 .. 10861421

Gene Structure 916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G071500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGGCAAGAAAATGATGAAGCTGCACTCCCTCTTCAGGAACAAAGAAACACCAACACCAACAACAACAACAACAACAATGTTGGCAACGCTTCCATGGCAATGGCCTTCTTGCAAGCACCCCAAAACCCTCTCCTTCCGAGCAGGGGACAACATGTTCAAAACCGTAAACTCCGTCTTCTTCGACAACGGAGGAGTCGAAACTCCGGAGTCTTGGTTTACCAACTCATCATCGGAGTCAACAAGTTTCACGACAGAGTCCGAGGACTACTTTGAGGGAGAGTCCTTGGAAATGGTGGTCCGGGGAGCAAGATCGGAGAGGCTGTTTTTCGAGCCCGAGGACACCAACTCCATCCTCGAAAAGGCGAAAGCCGGGGAGATCAACCCGTTTAAGGAGAGCGTGGTGCTGGCCATGGAGTCGGAGGATCCTTACAAGGACTTTCGAAGATCAATGGAGGAGATGGTGGAGTCTCATGGGCTAAAAGACTGGGAGTGCCTGGAGGAGCTTTTGGGATGGTATTTGAGGGTGAACAAGAAGAAGAATCATGGGTTTATAGTTGGAGCGTTTTTGGATCTTCTTGTTGCTCTGGCAGCTGCTGATTCTAATAATGCTAACAATTCTAGGTCTTGTACAGTTCATAATTATTCCACTTCTTTCTCTTCTGCTGTTTCTTCTTTTTCTTCTCCGTTGTCACGTTCTTTTCAAGGTCAGAATGAGATTAGAGAGGAAGAGGAGATTACAATGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ovate

Protein Analysis

250

Amino Acids

28.25

Weight (kDa)

5.04

Isoelectric Point (pI)

57.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04820
fragaria_vesca	FvH4_6g19870
malus_domestica	MD02G1258900.v1.1 MD07G1061800.v1.1 MD07G1061900.v1.1 MD12G1034200.v1.1 MD14G1035600.v1.1
prunus_persica	Prupe.2G071500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1
pyrus_communis	pycom07g04730 pycom12g03170 pycom14g03130
rosa_chinensis	RchiOBHm_Chr3g0475291
rosa_laevigata	RLG00000023854
rosa_multiflora	Rmu_ssc0000140.1_g000002
rosa_roxburghii	Rroxscaffold_6G00406410
rosa_rugosa	Rorug03G0147700
rosa_samantha	Rh3AG197700 Rh3BG228000 Rh3DG223200
rosa_wichuraiana	Rw3G017970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	205
AclWI	GGATC	3 cut(s)	419, 432, 579
AcoI	YGGCCR	1 cut(s)	408
AcuI	CTGAAG	1 cut(s)	19
AfaI	GTAC	1 cut(s)	631
AfiI	CCNNNNNNNGG	4 cut(s)	36, 145, 361, 391
AflIII	ACRYGT	1 cut(s)	153
AgsI	TTSAA	2 cut(s)	160, 704
AjnI	CCWGG	1 cut(s)	495
AloI	GAACNNNNNNTCC	2 cut(s)	140, 172
AluBI	AGCT	3 cut(s)	22, 505, 593
AluI	AGCT	3 cut(s)	22, 505, 593
Alw26I	GTCTC	1 cut(s)	474
AlwI	GGATC	3 cut(s)	419, 432, 579
AlwNI	CAGNNNCTG	1 cut(s)	596
Ama87I	CYCGRG	1 cut(s)	335
Aor13HI	TCCGGA	1 cut(s)	205
AoxI	GGCC	2 cut(s)	104, 408
ApeKI	GCWGC	3 cut(s)	22, 590, 593
AspS9I	GGNCC	1 cut(s)	298
AsuC2I	CCSGG	2 cut(s)	302, 373
AsuHPI	GGTGA	1 cut(s)	538
AsuII	TTCGAA	1 cut(s)	442
AvaI	CYCGRG	1 cut(s)	335
AvaII	GGWCC	1 cut(s)	298
BalI	TGGCCA	1 cut(s)	410
BamHI	GGATCC	1 cut(s)	424
BanII	GRGCYC	1 cut(s)	336
BbsI	GAAGAC	1 cut(s)	169
BbvI	GCAGC	3 cut(s)	9, 580, 602
BccI	CCATC	3 cut(s)	359, 454, 507
BciT130I	CCWGG	1 cut(s)	497
BcnI	CCSGG	2 cut(s)	302, 373
BcoDI	GTCTC	1 cut(s)	474
BfaI	CTAG	1 cut(s)	621
BisI	GCNGC	3 cut(s)	23, 591, 594
BlsI	GCNGC	3 cut(s)	24, 592, 595
Bme1390I	CCNGG	3 cut(s)	302, 373, 497
Bme18I	GGWCC	1 cut(s)	298
BmeT110I	CYCGRG	1 cut(s)	335
BmgT120I	GGNCC	1 cut(s)	298
BmiI	GGNNCC	1 cut(s)	426
BmrFI	CCNGG	3 cut(s)	302, 373, 497
BmrI	ACTGGG	1 cut(s)	496
BmuI	ACTGGG	1 cut(s)	496
BpiI	GAAGAC	1 cut(s)	169
BpmI	CTGGAG	1 cut(s)	518
Bpu14I	TTCGAA	1 cut(s)	442
BpuMI	CCSGG	2 cut(s)	302, 373
BsaJI	CCNNGG	7 cut(s)	95, 261, 285, 301, 336, 372, 411
BsaWI	WCCGGW	1 cut(s)	205
BsaXI	ACNNNNNCTCC	6 cut(s)	200, 230, 308, 332, 338, 362
Bsc4I	CCNNNNNNNGG	4 cut(s)	36, 145, 361, 391
Bse1I	ACTGG	1 cut(s)	491
Bse3DI	GCAATG	1 cut(s)	107
BseAI	TCCGGA	1 cut(s)	205
BseBI	CCWGG	1 cut(s)	497
BseDI	CCNNGG	7 cut(s)	95, 261, 285, 301, 336, 372, 411
BseGI	GGATG	2 cut(s)	351, 518
BseLI	CCNNNNNNNGG	4 cut(s)	36, 145, 361, 391
BseMI	GCAATG	1 cut(s)	107
BseNI	ACTGG	1 cut(s)	491
BseRI	GAGGAG	4 cut(s)	207, 470, 515, 746
BseXI	GCAGC	3 cut(s)	9, 580, 602
BsgI	GTGCAG	1 cut(s)	8
BshFI	GGCC	2 cut(s)	106, 410
BsiHKCI	CYCGRG	1 cut(s)	335
BsiSI	CCGG	3 cut(s)	206, 301, 372
BslFI	GGGAC	1 cut(s)	161
BslI	CCNNNNNNNGG	4 cut(s)	36, 145, 361, 391
BsmAI	GTCTC	1 cut(s)	474
BsmFI	GGGAC	1 cut(s)	161
BsnI	GGCC	2 cut(s)	106, 410
BsoBI	CYCGRG	1 cut(s)	335
Bsp119I	TTCGAA	1 cut(s)	442
Bsp1286I	GDGCHC	1 cut(s)	336
Bsp13I	TCCGGA	1 cut(s)	205
Bsp1407I	TGTACA	1 cut(s)	629
Bsp143I	GATC	5 cut(s)	311, 378, 424, 446, 571
Bsp19I	CCATGG	2 cut(s)	95, 411
BspANI	GGCC	2 cut(s)	106, 410
BspEI	TCCGGA	1 cut(s)	205
BspLI	GGNNCC	1 cut(s)	426
BspPI	GGATC	3 cut(s)	419, 432, 579
BspT104I	TTCGAA	1 cut(s)	442
BsrDI	GCAATG	1 cut(s)	107
BsrGI	TGTACA	1 cut(s)	629
BsrI	ACTGG	1 cut(s)	491
BssECI	CCNNGG	7 cut(s)	95, 261, 285, 301, 336, 372, 411
BssMI	GATC	5 cut(s)	311, 378, 424, 446, 571
BssT1I	CCWWGG	3 cut(s)	95, 285, 411
Bst2UI	CCWGG	1 cut(s)	497
Bst4CI	ACNGT	2 cut(s)	166, 634
Bst6I	CTCTTC	3 cut(s)	38, 664, 723
BstAUI	TGTACA	1 cut(s)	629
BstBI	TTCGAA	1 cut(s)	442
BstC8I	GCNNGC	2 cut(s)	116, 408
BstDSI	CCRYGG	2 cut(s)	95, 411
BstENI	CCTNNNNNAGG	1 cut(s)	359
BstF5I	GGATG	2 cut(s)	351, 518
BstKTI	GATC	5 cut(s)	314, 381, 427, 449, 574
BstMAI	GTCTC	1 cut(s)	474
BstMBI	GATC	5 cut(s)	311, 378, 424, 446, 571
BstMWI	GCNNNNNNNGC	2 cut(s)	97, 590
BstNI	CCWGG	1 cut(s)	497
BstNSI	RCATGY	1 cut(s)	157
BstSCI	CCNGG	3 cut(s)	300, 371, 495
BstV1I	GCAGC	3 cut(s)	9, 580, 602
BstV2I	GAAGAC	1 cut(s)	169
BstX2I	RGATCY	2 cut(s)	424, 571
BstXI	CCANNNNNNTGG	1 cut(s)	102
BstYI	RGATCY	2 cut(s)	424, 571
BsuRI	GGCC	2 cut(s)	106, 410
BtgI	CCRYGG	2 cut(s)	95, 411
BtsCI	GGATG	2 cut(s)	351, 518
Cac8I	GCNNGC	2 cut(s)	116, 408
CaiI	CAGNNNCTG	1 cut(s)	596
Cfr13I	GGNCC	1 cut(s)	298
Csp6I	GTAC	1 cut(s)	630
CviAII	CATG	5 cut(s)	96, 154, 412, 473, 545
CviJI	RGCY	9 cut(s)	22, 106, 322, 334, 371, 410, 478, 505, 593
CviKI_1	RGCY	9 cut(s)	22, 106, 322, 334, 371, 410, 478, 505, 593
CviQI	GTAC	1 cut(s)	630
DpnI	GATC	5 cut(s)	313, 380, 426, 448, 573
DpnII	GATC	5 cut(s)	311, 378, 424, 446, 571
EaeI	YGGCCR	1 cut(s)	408
Eam1104I	CTCTTC	3 cut(s)	38, 664, 723
EarI	CTCTTC	3 cut(s)	38, 664, 723
Eco130I	CCWWGG	3 cut(s)	95, 285, 411
Eco24I	GRGCYC	1 cut(s)	336
Eco47I	GGWCC	1 cut(s)	298
Eco57I	CTGAAG	1 cut(s)	19
Eco88I	CYCGRG	1 cut(s)	335
EcoNI	CCTNNNNNAGG	1 cut(s)	359
EcoRII	CCWGG	1 cut(s)	495
EcoT14I	CCWWGG	3 cut(s)	95, 285, 411
EcoT38I	GRGCYC	1 cut(s)	336
ErhI	CCWWGG	3 cut(s)	95, 285, 411
FaeI	CATG	5 cut(s)	99, 157, 415, 476, 548
FaiI	YATR	7 cut(s)	97, 155, 413, 474, 546, 554, 639
FaqI	GGGAC	1 cut(s)	161
FatI	CATG	5 cut(s)	95, 153, 411, 472, 544
Fnu4HI	GCNGC	3 cut(s)	23, 591, 594
FokI	GGATG	2 cut(s)	338, 525
FriOI	GRGCYC	1 cut(s)	336
Fsp4HI	GCNGC	3 cut(s)	23, 591, 594
FspBI	CTAG	1 cut(s)	621
GluI	GCNGC	3 cut(s)	23, 591, 594
GsuI	CTGGAG	1 cut(s)	518
HaeIII	GGCC	2 cut(s)	106, 410
HapII	CCGG	3 cut(s)	206, 301, 372
Hin1II	CATG	5 cut(s)	99, 157, 415, 476, 548
HincII	GTYRAC	1 cut(s)	240
HindII	GTYRAC	1 cut(s)	240
HinfI	GANTC	9 cut(s)	195, 209, 236, 257, 281, 416, 467, 541, 599
HpaII	CCGG	3 cut(s)	206, 301, 372
HphI	GGTGA	1 cut(s)	538
Hpy166II	GTNNAC	4 cut(s)	169, 219, 240, 529
Hpy188I	TCNGA	6 cut(s)	140, 235, 262, 316, 421, 711
Hpy188III	TCNNGA	3 cut(s)	37, 206, 250
Hpy8I	GTNNAC	4 cut(s)	169, 219, 240, 529
HpyAV	CCTTC	2 cut(s)	117, 145
HpyCH4III	ACNGT	2 cut(s)	166, 634
HpyCH4IV	ACGT	1 cut(s)	694
HpyCH4V	TGCA	2 cut(s)	25, 114
HpyF10VI	GCNNNNNNNGC	2 cut(s)	97, 590
HpySE526I	ACGT	1 cut(s)	694
Hsp92II	CATG	5 cut(s)	99, 157, 415, 476, 548
Kpn2I	TCCGGA	1 cut(s)	205
Kzo9I	GATC	5 cut(s)	311, 378, 424, 446, 571
LmnI	GCTCC	3 cut(s)	305, 502, 560
Lsp1109I	GCAGC	3 cut(s)	9, 580, 602
MaeI	CTAG	1 cut(s)	621
MaeII	ACGT	1 cut(s)	694
MaeIII	GTNAC	1 cut(s)	690
MalI	GATC	5 cut(s)	313, 380, 426, 448, 573
MboI	GATC	5 cut(s)	311, 378, 424, 446, 571
MflI	RGATCY	2 cut(s)	424, 571
MhlI	GDGCHC	1 cut(s)	336
MlsI	TGGCCA	1 cut(s)	410
MluCI	AATT	2 cut(s)	616, 640
MluNI	TGGCCA	1 cut(s)	410
MlyI	GAGTC	7 cut(s)	204, 218, 245, 266, 290, 425, 476
MmeI	TCCRAC	2 cut(s)	399, 538
Mox20I	TGGCCA	1 cut(s)	410
MroI	TCCGGA	1 cut(s)	205
MscI	TGGCCA	1 cut(s)	410
MseI	TTAA	2 cut(s)	390, 748
MslI	CAYNNNNRTG	1 cut(s)	100
Msp20I	TGGCCA	1 cut(s)	410
MspA1I	CMGCKG	1 cut(s)	593
MspI	CCGG	3 cut(s)	206, 301, 372
MspR9I	CCNGG	3 cut(s)	302, 373, 497
MvaI	CCWGG	1 cut(s)	497
MwoI	GCNNNNNNNGC	2 cut(s)	97, 590
NciI	CCSGG	2 cut(s)	302, 373
NcoI	CCATGG	2 cut(s)	95, 411
NdeII	GATC	5 cut(s)	311, 378, 424, 446, 571
NlaIII	CATG	5 cut(s)	99, 157, 415, 476, 548
NlaIV	GGNNCC	1 cut(s)	426
NmuCI	GTSAC	1 cut(s)	690
NspI	RCATGY	1 cut(s)	157
NspV	TTCGAA	1 cut(s)	442
PciI	ACATGT	1 cut(s)	153
PcsI	WCGNNNNNNNCGW	1 cut(s)	195
PfeI	GAWTC	2 cut(s)	541, 599
PflFI	GACNNNGTC	1 cut(s)	256
PkrI	GCNGC	3 cut(s)	24, 592, 595
PleI	GAGTC	7 cut(s)	203, 217, 244, 265, 289, 424, 475
PpsI	GAGTC	7 cut(s)	203, 217, 244, 265, 289, 424, 475
PscI	ACATGT	1 cut(s)	153
Psp6I	CCWGG	1 cut(s)	495
PspGI	CCWGG	1 cut(s)	495
PspN4I	GGNNCC	1 cut(s)	426
PspPI	GGNCC	1 cut(s)	298
PstNI	CAGNNNCTG	1 cut(s)	596
PsuI	RGATCY	2 cut(s)	424, 571
PsyI	GACNNNGTC	1 cut(s)	256
PvuII	CAGCTG	1 cut(s)	593
RsaI	GTAC	1 cut(s)	631
RsaNI	GTAC	1 cut(s)	630
RseI	CAYNNNNRTG	1 cut(s)	100
SaqAI	TTAA	2 cut(s)	390, 748
SatI	GCNGC	3 cut(s)	23, 591, 594
Sau3AI	GATC	5 cut(s)	311, 378, 424, 446, 571
Sau96I	GGNCC	1 cut(s)	298
SchI	GAGTC	7 cut(s)	204, 218, 245, 266, 290, 425, 476
ScrFI	CCNGG	3 cut(s)	302, 373, 497
SduI	GDGCHC	1 cut(s)	336
SetI	ASST	6 cut(s)	24, 507, 595, 626, 697, 709
SfuI	TTCGAA	1 cut(s)	442
SinI	GGWCC	1 cut(s)	298
SmiMI	CAYNNNNRTG	1 cut(s)	100
Sse9I	AATT	2 cut(s)	616, 640
SspMI	CTAG	1 cut(s)	621
StyD4I	CCNGG	3 cut(s)	300, 371, 495
StyI	CCWWGG	3 cut(s)	95, 285, 411
TaaI	ACNGT	2 cut(s)	166, 634
TaiI	ACGT	1 cut(s)	697
TaqI	TCGA	5 cut(s)	183, 198, 330, 357, 442
TasI	AATT	2 cut(s)	616, 640
TatI	WGTACW	1 cut(s)	629
TfiI	GAWTC	2 cut(s)	541, 599
Tru1I	TTAA	2 cut(s)	390, 748
Tru9I	TTAA	2 cut(s)	390, 748
TseFI	GTSAC	1 cut(s)	690
TseI	GCWGC	3 cut(s)	22, 590, 593
Tsp45I	GTSAC	1 cut(s)	690
TspDTI	ATGAA	2 cut(s)	32, 626
TspGWI	ACGGA	3 cut(s)	163, 204, 675
Tth111I	GACNNNGTC	1 cut(s)	256
VpaK11BI	GGWCC	1 cut(s)	298
XagI	CCTNNNNNAGG	1 cut(s)	359
XceI	RCATGY	1 cut(s)	157
XspI	CTAG	1 cut(s)	621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.