Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007077

Physical Location & Seq

Genomic Coordinates Forward (+)

1955861 .. 1959250

Gene Structure 3390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G06400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3093 bp

ATGAAAGCCTTGTTTCGATTCAAGTCTTGCTTGTTTGATCCAACACGAAGGAGGAACCAACTCGTTTCTTTCTCAGGTTTCTCAAAGTCATCTAAATCTAATAAAACCCGTGAGACTACTACCACATCGAAGATCCAAGCAGAAGCTACTGCAATCACTTCACTATTCAACGAGATTACTGAGATTTTAGGAACGGATGTTGTCAAACTAGATGAGACCACGCGGCTCAGATCCCATGTGTCAGGAGCTGTCTCTGATAATGGAGTATCGGTTTCTTGCACGGAAGGTGTTCGTCAAAATGCTGCAATGGGATTTTCAGGTGAGGATGAAAAGGCTCAGAAAGTTCTTCATGAAGAAGTTGACTTCAGCCCCGTGGTTCATGAGATTACGAGTGTCGTCAGGGGAGATGATGTATTAGTTTCGATGGAGGACAGGTTAGAGAAACTGAGTTTTCGGTTTGAACCAGAAATAGTGGAGAATGTACTCAAGAGGTGCTTCAAGGTTCCTCATTTGGCTATGAGGTTCTTTAATTGGGTTAAACAAAAGGATGGGTTTTCGCATAGAGTTGGAATTTACAATACCATGCTTAGCATAGCTGGAGAAGCGAGAAATCTCGATATGGTAGATGAATTGGTGAGTGAAATGGAGAAGAATGGTTGTGATAAGGATATCAGGACATGGACCATTCTTATCTCAGTGTACGGGAAGGCAAAAAAGATTGGAAAAGGTCTGCTAGTTTTTGAGAAGATGAGGAAAAGTGGATTCGAACTCGATGCTACGGCTTACAATATCATGATTAGGTCTCTATGTATTGCTGGTAGAGGTGATCTTGCGCTTGAATTCTATAAGGAAATGATGGAAAAAGGTATCACTTTTGGATTAAGAACGTACAAGATGTTACTGGATTGCATAGCGAAATCAGAGAAAGTTGATGTAGTCCAGTCCATTGCAGATGACATGGTTAGGATATGTGAGATATCAGAACATGACGCTTTTGGTTATTTGCTCAAGAGTTTTTGTGTTTCCGGTAAGATAAAAGAAGCTCTGGAACTGATCCGCGAGCTTAAGAACAAGGAAATGTGCCTCGACGCTAAGTATTTTGAGATTTTGGTAAAAGGACTTTGTAGAGCCAATAGAATGGTAGATGCTCTAGAGATTGTTGATATAATGAAGAGAAGGAAACTGGATGACTCTAATGTCTATGGTATCATCATCAGTGGGTATCTCAGGCAAAACGATGTTTCAAAAGCACTTGAACAGTTTGAGGTTATTAAAAAATCAGGGCGTCCACCTAGAGTTTCTACATACACTGAGATTATGCAACACCTCTTCAAGTTGAAACAGTTTGAAAAGGGTTGCAACTTATTCAATGAGATGATAGAGAACGGGATTGAGCCTGACAGCGTTGCTATCACAGCCGTGGTTGCTGGTCATTTGGGCCAAAACCGAGTAGCAGAGGCATGGAAGGTGTTTAGCAGCATGGAGGAAAAAGGCATCAAACCTACATGGAAATCGTATTCGATATTTGTGAAAGAGCTCTGTAGATCATCAAGATATGATGAGATCATTAAGATATTTAATCAAATGCACGCCTCCAAGATAGTTATTAGAGATGATATCTTTTCTTGGGTTATCTCTAGTATGGAGAAAAATGGTGAAAAGGAGAAGATTCATCTTATCAAAGAAATCCAGAAAAGATCCAATTCCTATTGTGATGAACTAAACGGATCTGGCAAAGCAGAATTTAGTCAAGAAGAAGAGCTTGTTGATGACTATAATTGTCCACAACTAGTGCAGCAGTCAGCTCTTCCACCAGCTTTATCTGCTGTTGATAAAATGGATGTGCAAGAAATTTGTCGGGTGTTATCATCCTCCCGAGATTGGGAGAGAACACAAGAAGCTCTAGAAAAATCGACAGTCCAGTTCACACCAGAACTGGTAGTTGAGGTTCTACGTCATGCCAAGATACAAGGCAACGCTGTTTTACGTTTCTTTTCATGGGTGGGAAAGAGAAATGGCTATAAGCACAATTCAGAGGCATACAACATGAGCATCAAAGTTGCAGGATGTGGGAAAGATTTTAAGCAGATGAGAAGTCTGTTTTACGAGATGAGAAGGCAAGGCTGCTTGATAACACAAGATACTTGGGCAATCATGATAATGCAGTATGGTAGAACCGGTCTTACCAACATTGCTATTAGAACGTTCAAGGAAATGAAAGATATGGGTCTGATCCCGAGCTCTTCGACTTTCAAGTGTTTAATCACAGTTCTTTGTGAGAAGAAAGGCAGAAACGTTGAAGAAGCCACCAGAACATTCCGGGAGATGATTCGTTCAGGTTTTGTCCCAGATAGAGAACTAGTCCAAGACTACTTGGGATGCTTATGTGAAGTTGGTAACACGAAGGATGCAAAAAGTTGTTTGGATTCTCTCGGCAAGATAGGTTTCCCTGTCACTGTGGCCTACTCAATTTACATAAGAGCTCTTTGTCGAATTGGAAAGCTAGAAGAAGCTCTATCAGAATTAGCCAGTTTTGAAGGAGAGAGATCTTTACTAGACCAGTATACTTATGGAAGCATTGTTCATGGTTTATTACAGAGAGGAGACTTACAAAAAGCACTGGATAAAGTGAACTCCATGAAGGAAATTGGAACAAAACCTGGTGTCCATGTCTACACATCTCTGATTGTTTATTTCTTCAAGGAGAAACAGCTCGAGAAGGTTCTAGAGACATGTCAGAAAATGGAAGGAGAAAGCTGCGAACCTTCGGTTGTTACATATACGGCAATGATATGTGGATACATGAGCCTAGGAAAAGTGGAAGAGGCTTGGAATGCATTCCGCAATATGGAAGAGAGAGGAACTTCACCAGATTTTAAAACATATAGTAAGTTCATAAACTGCTTGTGCCAAGCATGCAAATCAGAAGATGCCCTGAAGCTTCTGTCTGAGATGCTGGATAAGGGTATTGCTCCAAGCACTATCAATTTCCGAACAGTTTTCTACGGGTTAAACAGAGAAGGCAAGCATGATCTTGCCCGGATTGCTCTACAGAAGAAATCGGCTTTAGTAGCACAGCGAACGGTATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

1030

Amino Acids

116.91

Weight (kDa)

8.36

Isoelectric Point (pI)

33.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mtf2	PF19189	161 - 239	2.8e-07	Mtf2 family
PPR_2	PF13041	189 - 232	1.3e-06	PPR repeat family
PPR_long	PF17177	189 - 275	1.3e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	223 - 270	8.5e-11	PPR repeat family
PPR	PF01535	226 - 255	9.9e-06	PPR repeat
PPR_2	PF13041	258 - 306	3.4e-09	PPR repeat family
PPR	PF01535	261 - 290	4.2e-07	PPR repeat
PPR_long	PF17177	410 - 558	1.4e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	431 - 474	1.1e-08	PPR repeat family
PPR_2	PF13041	466 - 515	3.9e-12	PPR repeat family
PPR_2	PF13041	715 - 759	1.3e-07	PPR repeat family
PPR_long	PF17177	866 - 994	1.7e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	879 - 931	4.4e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	887 - 934	1.4e-09	PPR repeat family
PPR_1	PF12854	919 - 951	1.8e-06	PPR repeat
PPR_2	PF13041	922 - 971	6.9e-16	PPR repeat family
PPR	PF01535	925 - 954	1.4e-06	PPR repeat
PPR_2	PF13041	961 - 1004	5.5e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0007077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06400
fragaria_vesca	FvH4_6g20810 FvH4_6g20810 FvH4_6g20810
malus_domestica	MD12G1044100.v1.1
prunus_persica	Prupe.7G091000_v2.0.a1
pyrus_communis	pycom12g03800
rosa_chinensis	RchiOBHm_Chr3g0476881
rosa_laevigata	RLG00000023746
rosa_multiflora	Rmu_sc0000288.1_g000033
rosa_roxburghii	Rroxscaffold_6G00403680 Rroxscaffold_6G00404930
rosa_rugosa	Rorug03G0157400
rosa_samantha	Rh3AG207600 Rh3AG229900 Rh3BG240200 Rh3BG241300 Rh3CG233900 Rh3CG235000 Rh3CG235700 Rh3CG259900 Rh3DG233900
rosa_wichuraiana	Rw0G011140 Rw3G018900 Rw3G020670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1196
AccI	GTMKAC	2 cut(s)	2564, 2673
AccII	CGCG	2 cut(s)	223, 1059
AciI	CCGC	3 cut(s)	223, 1057, 2842
AclI	AACGTT	2 cut(s)	2204, 2295
AclWI	GGATC	7 cut(s)	32, 127, 225, 1048, 1692, 1735, 2227
AcsI	RAATTY	4 cut(s)	570, 839, 1742, 1851
AcuI	CTGAAG	2 cut(s)	349, 2957
AcyI	GRCGYC	1 cut(s)	1285
AfaI	GTAC	3 cut(s)	483, 701, 890
AfiI	CCNNNNNNNGG	3 cut(s)	1881, 1882, 2848
AflII	CTTAAG	1 cut(s)	1064
AflIII	ACRYGT	1 cut(s)	2732
AgeI	ACCGGT	1 cut(s)	2177
AhlI	ACTAGT	2 cut(s)	1789, 2359
AjnI	CCWGG	1 cut(s)	2659
AleI	CACNNNNGTG	1 cut(s)	1418
AloI	GAACNNNNNNTCC	2 cut(s)	2565, 2597
Alw21I	GWGCWC	3 cut(s)	1539, 2243, 2485
Alw26I	GTCTC	6 cut(s)	107, 209, 256, 807, 2598, 2723
AlwI	GGATC	7 cut(s)	32, 127, 225, 1048, 1692, 1735, 2227
AlwNI	CAGNNNCTG	1 cut(s)	248
Ama87I	CYCGRG	3 cut(s)	1875, 2236, 2714
AoxI	GGCC	2 cut(s)	1438, 2460
ApeKI	GCWGC	5 cut(s)	302, 1476, 1795, 2124, 2757
ApoI	RAATTY	4 cut(s)	570, 839, 1742, 1851
AsiGI	ACCGGT	1 cut(s)	2177
Asp700I	GAANNNNTTC	2 cut(s)	288, 2837
AspA2I	CCTAGG	1 cut(s)	2809
AspLEI	GCGC	1 cut(s)	835
AspS9I	GGNCC	2 cut(s)	681, 1438
AsuC2I	CCSGG	2 cut(s)	2321, 3040
AsuHPI	GGTGA	5 cut(s)	332, 646, 836, 1667, 2859
AsuII	TTCGAA	1 cut(s)	765
AvaI	CYCGRG	3 cut(s)	1875, 2236, 2714
AvaII	GGWCC	1 cut(s)	681
AvrII	CCTAGG	1 cut(s)	2809
BanII	GRGCYC	3 cut(s)	1539, 2243, 2485
Bbv12I	GWGCWC	3 cut(s)	1539, 2243, 2485
BbvI	GCAGC	5 cut(s)	289, 1488, 1807, 2111, 2744
BccI	CCATC	3 cut(s)	418, 542, 850
BceAI	ACGGC	3 cut(s)	795, 1403, 2799
BcgI	CGANNNNNNTGC	2 cut(s)	755, 789
BciT130I	CCWGG	1 cut(s)	2661
BciVI	GTATCC	1 cut(s)	2792
BcnI	CCSGG	2 cut(s)	2321, 3040
BcoDI	GTCTC	6 cut(s)	107, 209, 256, 807, 2598, 2723
BcuI	ACTAGT	2 cut(s)	1789, 2359
BfmI	CTRYAG	2 cut(s)	1540, 3050
BfrI	CTTAAG	1 cut(s)	1064
BfuI	GTATCC	1 cut(s)	2792
BglII	AGATCT	1 cut(s)	2546
BisI	GCNGC	6 cut(s)	224, 303, 1477, 1796, 2125, 2758
BlnI	CCTAGG	1 cut(s)	2809
BlpI	GCTNAGC	1 cut(s)	587
BlsI	GCNGC	6 cut(s)	225, 304, 1478, 1797, 2126, 2759
Bme1390I	CCNGG	3 cut(s)	2321, 2661, 3040
Bme18I	GGWCC	1 cut(s)	681
BmeT110I	CYCGRG	3 cut(s)	1875, 2236, 2714
BmgT120I	GGNCC	2 cut(s)	681, 1438
BmiI	GGNNCC	2 cut(s)	56, 504
BmrFI	CCNGG	3 cut(s)	2321, 2661, 3040
BmsI	GCATC	8 cut(s)	763, 1135, 1503, 2061, 2369, 2398, 2920, 2943
BpmI	CTGGAG	1 cut(s)	618
Bpu1102I	GCTNAGC	1 cut(s)	587
Bpu14I	TTCGAA	1 cut(s)	765
BpuEI	CTTGAG	2 cut(s)	470, 992
BpuMI	CCSGG	2 cut(s)	2321, 3040
BsaHI	GRCGYC	1 cut(s)	1285
BsaI	GGTCTC	2 cut(s)	209, 807
BsaJI	CCNNGG	3 cut(s)	372, 1419, 2809
BsaWI	WCCGGW	2 cut(s)	1025, 2177
BsaXI	ACNNNNNCTCC	6 cut(s)	255, 285, 396, 419, 426, 449
Bsc4I	CCNNNNNNNGG	3 cut(s)	1881, 1882, 2848
Bse118I	RCCGGY	1 cut(s)	2177
Bse1I	ACTGG	8 cut(s)	906, 940, 1188, 1921, 1941, 2529, 2560, 2625
Bse3DI	GCAATG	4 cut(s)	312, 945, 2190, 2793
BseBI	CCWGG	1 cut(s)	2661
BseDI	CCNNGG	3 cut(s)	372, 1419, 2809
BseGI	GGATG	9 cut(s)	202, 331, 553, 1192, 1846, 1868, 2072, 2384, 2413
BseLI	CCNNNNNNNGG	3 cut(s)	1881, 1882, 2848
BseMI	GCAATG	4 cut(s)	312, 945, 2190, 2793
BseMII	CTCAG	9 cut(s)	87, 171, 241, 350, 437, 708, 1240, 1302, 2940
BseNI	ACTGG	8 cut(s)	906, 940, 1188, 1921, 1941, 2529, 2560, 2625
BseRI	GAGGAG	1 cut(s)	2616
BseXI	GCAGC	5 cut(s)	289, 1488, 1807, 2111, 2744
BsgI	GTGCAG	1 cut(s)	1814
Bsh1236I	CGCG	2 cut(s)	223, 1059
BshFI	GGCC	2 cut(s)	1440, 2462
BshTI	ACCGGT	1 cut(s)	2177
BsiHKAI	GWGCWC	3 cut(s)	1539, 2243, 2485
BsiHKCI	CYCGRG	3 cut(s)	1875, 2236, 2714
BsiSI	CCGG	4 cut(s)	1026, 2178, 2320, 3040
BslFI	GGGAC	1 cut(s)	2330
BslI	CCNNNNNNNGG	3 cut(s)	1881, 1882, 2848
BsmAI	GTCTC	6 cut(s)	107, 209, 256, 807, 2598, 2723
BsmFI	GGGAC	1 cut(s)	2330
BsmI	GAATGC	2 cut(s)	2837, 2839
BsnI	GGCC	2 cut(s)	1440, 2462
Bso31I	GGTCTC	2 cut(s)	209, 807
BsoBI	CYCGRG	3 cut(s)	1875, 2236, 2714
Bsp119I	TTCGAA	1 cut(s)	765
Bsp1286I	GDGCHC	3 cut(s)	1539, 2243, 2485
Bsp1720I	GCTNAGC	1 cut(s)	587
BspACI	CCGC	3 cut(s)	223, 1057, 2842
BspANI	GGCC	2 cut(s)	1440, 2462
BspCNI	CTCAG	9 cut(s)	86, 172, 240, 349, 438, 707, 1239, 1303, 2941
BspFNI	CGCG	2 cut(s)	223, 1059
BspHI	TCATGA	4 cut(s)	349, 379, 792, 2154
BspLI	GGNNCC	2 cut(s)	56, 504
BspPI	GGATC	7 cut(s)	32, 127, 225, 1048, 1692, 1735, 2227
BspQI	GCTCTTC	3 cut(s)	1752, 1812, 2248
BspT104I	TTCGAA	1 cut(s)	765
BspTI	CTTAAG	1 cut(s)	1064
BspTNI	GGTCTC	2 cut(s)	209, 807
BsrDI	GCAATG	4 cut(s)	312, 945, 2190, 2793
BsrFI	RCCGGY	1 cut(s)	2177
BsrI	ACTGG	8 cut(s)	906, 940, 1188, 1921, 1941, 2529, 2560, 2625
BssAI	RCCGGY	1 cut(s)	2177
BssECI	CCNNGG	3 cut(s)	372, 1419, 2809
BssNAI	GTATAC	1 cut(s)	2565
BssNI	GRCGYC	1 cut(s)	1285
BssT1I	CCWWGG	1 cut(s)	2809
Bst1107I	GTATAC	1 cut(s)	2565
Bst2UI	CCWGG	1 cut(s)	2661
Bst4CI	ACNGT	7 cut(s)	1260, 1344, 1918, 2269, 2458, 2998, 3085
Bst6I	CTCTTC	7 cut(s)	1166, 1334, 1752, 1812, 2248, 2817, 2847
BstACI	GRCGYC	1 cut(s)	1285
BstAFI	CTTAAG	1 cut(s)	1064
BstBI	TTCGAA	1 cut(s)	765
BstC8I	GCNNGC	4 cut(s)	1061, 1590, 2917, 3026
BstDSI	CCRYGG	2 cut(s)	372, 1419
BstF5I	GGATG	9 cut(s)	202, 331, 553, 1192, 1846, 1868, 2072, 2384, 2413
BstFNI	CGCG	2 cut(s)	223, 1059
BstHHI	GCGC	1 cut(s)	835
BstMAI	GTCTC	6 cut(s)	107, 209, 256, 807, 2598, 2723
BstMWI	GCNNNNNNNGC	8 cut(s)	602, 1415, 1424, 1823, 2834, 2916, 3044, 3071
BstNI	CCWGG	1 cut(s)	2661
BstNSI	RCATGY	2 cut(s)	2736, 2919
BstSCI	CCNGG	3 cut(s)	2319, 2659, 3038
BstSFI	CTRYAG	2 cut(s)	1540, 3050
BstUI	CGCG	2 cut(s)	223, 1059
BstV1I	GCAGC	5 cut(s)	289, 1488, 1807, 2111, 2744
BstX2I	RGATCY	5 cut(s)	132, 230, 1697, 1727, 2546
BstXI	CCANNNNNNTGG	1 cut(s)	1138
BstYI	RGATCY	5 cut(s)	132, 230, 1697, 1727, 2546
BstZ17I	GTATAC	1 cut(s)	2565
BsuI	GTATCC	1 cut(s)	2792
BsuRI	GGCC	2 cut(s)	1440, 2462
BtgI	CCRYGG	2 cut(s)	372, 1419
BtsCI	GGATG	9 cut(s)	202, 331, 553, 1192, 1846, 1868, 2072, 2384, 2413
BtsIMutI	CAGTG	5 cut(s)	702, 1222, 1308, 2454, 2618
Cac8I	GCNNGC	4 cut(s)	1061, 1590, 2917, 3026
CaiI	CAGNNNCTG	1 cut(s)	248
CciI	TCATGA	4 cut(s)	349, 379, 792, 2154
CfoI	GCGC	1 cut(s)	835
Cfr10I	RCCGGY	1 cut(s)	2177
Cfr13I	GGNCC	2 cut(s)	681, 1438
CseI	GACGC	3 cut(s)	998, 1097, 1274
CsiI	ACCWGGT	1 cut(s)	2659
Csp6I	GTAC	3 cut(s)	482, 700, 889
CspAI	ACCGGT	1 cut(s)	2177
CviQI	GTAC	3 cut(s)	482, 700, 889
DraI	TTTAAA	1 cut(s)	2878
DrdI	GACNNNNNNGTC	1 cut(s)	1196
DseDI	GACNNNNNNGTC	1 cut(s)	1196
Eam1104I	CTCTTC	7 cut(s)	1166, 1334, 1752, 1812, 2248, 2817, 2847
EarI	CTCTTC	7 cut(s)	1166, 1334, 1752, 1812, 2248, 2817, 2847
Ecl136II	GAGCTC	3 cut(s)	1537, 2241, 2483
Eco130I	CCWWGG	1 cut(s)	2809
Eco24I	GRGCYC	3 cut(s)	1539, 2243, 2485
Eco31I	GGTCTC	2 cut(s)	209, 807
Eco32I	GATATC	3 cut(s)	670, 978, 1618
Eco47I	GGWCC	1 cut(s)	681
Eco53kI	GAGCTC	3 cut(s)	1537, 2241, 2483
Eco57I	CTGAAG	2 cut(s)	349, 2957
Eco88I	CYCGRG	3 cut(s)	1875, 2236, 2714
EcoICRI	GAGCTC	3 cut(s)	1537, 2241, 2483
EcoRI	GAATTC	1 cut(s)	839
EcoRII	CCWGG	1 cut(s)	2659
EcoRV	GATATC	3 cut(s)	670, 978, 1618
EcoT14I	CCWWGG	1 cut(s)	2809
EcoT22I	ATGCAT	1 cut(s)	2839
EcoT38I	GRGCYC	3 cut(s)	1539, 2243, 2485
ErhI	CCWWGG	1 cut(s)	2809
FalI	AAGNNNNNCTT	6 cut(s)	14, 46, 479, 511, 1746, 1778
FaqI	GGGAC	1 cut(s)	2330
FblI	GTMKAC	2 cut(s)	2564, 2673
Fnu4HI	GCNGC	6 cut(s)	224, 303, 1477, 1796, 2125, 2758
FokI	GGATG	9 cut(s)	209, 338, 560, 1199, 1853, 1855, 2079, 2391, 2420
FriOI	GRGCYC	3 cut(s)	1539, 2243, 2485
Fsp4HI	GCNGC	6 cut(s)	224, 303, 1477, 1796, 2125, 2758
GlaI	GCGC	1 cut(s)	834
GluI	GCNGC	6 cut(s)	224, 303, 1477, 1796, 2125, 2758
GsuI	CTGGAG	1 cut(s)	618
HaeIII	GGCC	2 cut(s)	1440, 2462
HapII	CCGG	4 cut(s)	1026, 2178, 2320, 3040
HgaI	GACGC	3 cut(s)	998, 1097, 1274
HhaI	GCGC	1 cut(s)	835
Hin1I	GRCGYC	1 cut(s)	1285
Hin6I	GCGC	1 cut(s)	833
HinP1I	GCGC	1 cut(s)	833
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HindIII	AAGCTT	1 cut(s)	2939
HinfI	GANTC	6 cut(s)	18, 762, 1190, 1669, 2329, 2426
HpaII	CCGG	4 cut(s)	1026, 2178, 2320, 3040
HphI	GGTGA	5 cut(s)	332, 646, 836, 1667, 2859
Hpy166II	GTNNAC	8 cut(s)	361, 700, 1289, 1784, 1926, 2565, 2632, 2674
Hpy8I	GTNNAC	8 cut(s)	361, 700, 1289, 1784, 1926, 2565, 2632, 2674
Hpy99I	CGWCG	1 cut(s)	1091
HpyCH4III	ACNGT	7 cut(s)	1260, 1344, 1918, 2269, 2458, 2998, 3085
HpyCH4IV	ACGT	5 cut(s)	887, 1954, 1987, 2204, 2295
HpyF10VI	GCNNNNNNNGC	8 cut(s)	602, 1415, 1424, 1823, 2834, 2916, 3044, 3071
HpySE526I	ACGT	5 cut(s)	887, 1954, 1987, 2204, 2295
Hsp92I	GRCGYC	1 cut(s)	1285
HspAI	GCGC	1 cut(s)	833
LguI	GCTCTTC	3 cut(s)	1752, 1812, 2248
LmnI	GCTCC	2 cut(s)	245, 2977
Lsp1109I	GCAGC	5 cut(s)	289, 1488, 1807, 2111, 2744
LweI	GCATC	8 cut(s)	763, 1135, 1503, 2061, 2369, 2398, 2920, 2943
MabI	ACCWGGT	1 cut(s)	2659
MaeII	ACGT	5 cut(s)	887, 1954, 1987, 2204, 2295
MaeIII	GTNAC	4 cut(s)	897, 2396, 2452, 2773
MflI	RGATCY	5 cut(s)	132, 230, 1697, 1727, 2546
MhlI	GDGCHC	3 cut(s)	1539, 2243, 2485
MlyI	GAGTC	1 cut(s)	1184
MmeI	TCCRAC	2 cut(s)	65, 547
Mph1103I	ATGCAT	1 cut(s)	2839
MroXI	GAANNNNTTC	2 cut(s)	288, 2837
MslI	CAYNNNNRTG	2 cut(s)	1418, 2159
MspCI	CTTAAG	1 cut(s)	1064
MspI	CCGG	4 cut(s)	1026, 2178, 2320, 3040
MspR9I	CCNGG	3 cut(s)	2321, 2661, 3040
Mva1269I	GAATGC	2 cut(s)	2837, 2839
MvaI	CCWGG	1 cut(s)	2661
MvnI	CGCG	2 cut(s)	223, 1059
MwoI	GCNNNNNNNGC	8 cut(s)	602, 1415, 1424, 1823, 2834, 2916, 3044, 3071
NciI	CCSGG	2 cut(s)	2321, 3040
NlaIV	GGNNCC	2 cut(s)	56, 504
NmeAIII	GCCGAG	1 cut(s)	2412
NmuCI	GTSAC	1 cut(s)	2452
NsiI	ATGCAT	1 cut(s)	2839
NspI	RCATGY	2 cut(s)	2736, 2919
NspV	TTCGAA	1 cut(s)	765
OliI	CACNNNNGTG	1 cut(s)	1418
PaeI	GCATGC	1 cut(s)	2919
PaeR7I	CTCGAG	1 cut(s)	2714
PagI	TCATGA	4 cut(s)	349, 379, 792, 2154
PciI	ACATGT	1 cut(s)	2732
PciSI	GCTCTTC	3 cut(s)	1752, 1812, 2248
PctI	GAATGC	2 cut(s)	2837, 2839
PdmI	GAANNNNTTC	2 cut(s)	288, 2837
PfeI	GAWTC	5 cut(s)	18, 762, 1669, 2329, 2426
PfoI	TCCNGGA	1 cut(s)	2319
PinAI	ACCGGT	1 cut(s)	2177
PkrI	GCNGC	6 cut(s)	225, 304, 1478, 1797, 2126, 2759
PleI	GAGTC	1 cut(s)	1184
PpsI	GAGTC	1 cut(s)	1184
PscI	ACATGT	1 cut(s)	2732
Psp124BI	GAGCTC	3 cut(s)	1539, 2243, 2485
Psp1406I	AACGTT	2 cut(s)	2204, 2295
Psp6I	CCWGG	1 cut(s)	2659
PspGI	CCWGG	1 cut(s)	2659
PspN4I	GGNNCC	2 cut(s)	56, 504
PspPI	GGNCC	2 cut(s)	681, 1438
PsrI	GAACNNNNNNTAC	4 cut(s)	1932, 1964, 2167, 2199
PstNI	CAGNNNCTG	1 cut(s)	248
PsuI	RGATCY	5 cut(s)	132, 230, 1697, 1727, 2546
RsaI	GTAC	3 cut(s)	483, 701, 890
RsaNI	GTAC	3 cut(s)	482, 700, 889
RseI	CAYNNNNRTG	2 cut(s)	1418, 2159
SacI	GAGCTC	3 cut(s)	1539, 2243, 2485
SapI	GCTCTTC	3 cut(s)	1752, 1812, 2248
SatI	GCNGC	6 cut(s)	224, 303, 1477, 1796, 2125, 2758
Sau96I	GGNCC	2 cut(s)	681, 1438
SchI	GAGTC	1 cut(s)	1184
ScrFI	CCNGG	3 cut(s)	2321, 2661, 3040
SduI	GDGCHC	3 cut(s)	1539, 2243, 2485
SexAI	ACCWGGT	1 cut(s)	2659
SfaNI	GCATC	8 cut(s)	763, 1135, 1503, 2061, 2369, 2398, 2920, 2943
SfcI	CTRYAG	2 cut(s)	1540, 3050
Sfr274I	CTCGAG	1 cut(s)	2714
SfuI	TTCGAA	1 cut(s)	765
SinI	GGWCC	1 cut(s)	681
SlaI	CTCGAG	1 cut(s)	2714
SmiMI	CAYNNNNRTG	2 cut(s)	1418, 2159
SmlI	CTYRAG	4 cut(s)	485, 1007, 1064, 2714
SmoI	CTYRAG	4 cut(s)	485, 1007, 1064, 2714
SpeI	ACTAGT	2 cut(s)	1789, 2359
SphI	GCATGC	1 cut(s)	2919
SsiI	CCGC	3 cut(s)	223, 1057, 2842
SstI	GAGCTC	3 cut(s)	1539, 2243, 2485
StyD4I	CCNGG	3 cut(s)	2319, 2659, 3038
StyI	CCWWGG	1 cut(s)	2809
TaaI	ACNGT	7 cut(s)	1260, 1344, 1918, 2269, 2458, 2998, 3085
TaiI	ACGT	5 cut(s)	890, 1957, 1990, 2207, 2298
TatI	WGTACW	1 cut(s)	481
TauI	GCSGC	1 cut(s)	226
TfiI	GAWTC	5 cut(s)	18, 762, 1669, 2329, 2426
TscAI	CASTG	5 cut(s)	702, 1222, 1315, 2461, 2625
TseFI	GTSAC	1 cut(s)	2452
TseI	GCWGC	5 cut(s)	302, 1476, 1795, 2124, 2757
Tsp45I	GTSAC	1 cut(s)	2452
TspGWI	ACGGA	3 cut(s)	209, 296, 1740
TspRI	CASTG	5 cut(s)	702, 1222, 1315, 2461, 2625
Vha464I	CTTAAG	1 cut(s)	1064
VpaK11BI	GGWCC	1 cut(s)	681
XapI	RAATTY	4 cut(s)	570, 839, 1742, 1851
XbaI	TCTAGA	3 cut(s)	1150, 1903, 2725
XceI	RCATGY	2 cut(s)	2736, 2919
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2567
XhoI	CTCGAG	1 cut(s)	2714
XmaJI	CCTAGG	1 cut(s)	2809
XmiI	GTMKAC	2 cut(s)	2564, 2673
XmnI	GAANNNNTTC	2 cut(s)	288, 2837
Zsp2I	ATGCAT	1 cut(s)	2839

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.