Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0007077

Physical Location & Seq

Genomic Coordinates Reverse (-)

22118981 .. 22122498

Gene Structure 3518 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG233900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3102 bp

ATGCGAGGCTTATCCACCAAATTACAGTCCATGTGTTGGAGCTCAACCTCTAAAACCCTTGATTTCCGATTCTCAAAATTTCAGAAGATTGATAACTTTGCGACGCTCACTAAGCCATCTACTAAGCCCAACAAAGCCCACTTGAAACAACAACAAGAACCGAGCTCGTTTGGATTGCTGTTCAGTGAAATAACTAAGATTTTAGGGGCTGAACATGTCAGTCTGGATAAAACCCCATCTGGGTTTTTTATTTGCAAGGAAACCCATCTTGGGGTTGGTGAGGTTGGGCAAGAGATTGCTAAGGTGAATGCACTGGGAGAAAAGGAAGATATAACTGTTGTGGAGGAAACCAGATTCGAAAGCGTAGCTGAAACTGATGTTAGCCCAGTAGTTCATGAGGTTACGAAGATTGTCAGGGCGGAAAATCGTTTGGTTTCGATGGAGGAGCGGTTAGACGAGTTGGGTTTTCAGTTAGATTCAGAGATTGTTGACAAAGTTCTGAAGAGGTGCTTTAAAGTGCCACATTTGGCTTTAGGGTTCTTTGATTGGGTGAAACTGAAAGAAGGGTTCTGTCACACGACTAAGACTTATAATACCGTGCTGTGTATAGCTGGGGAGGCAAGAGAGTTTGGGCTGGTGGAGAAGTTGGTGGAGGAGATGGAAAGGAACTCGTGCGAGAAAGATGTTAAGACCTGGACCATTCTTATCCAGATGTATGGGAAGGCTAAGTTAGTTGGAAGAGCCTTGTTAGTCTATGAGAAGATGAAGAAATGCGGTTTTGAACCAGACTCCGTGGTTTTCAGAGTGATGATACGTGCACTTTGTGCTGCTGGAAAAGCCGACGTGGCAATGGAATTTTACAAGTTAATGGTACAGAAGGACATTGGACTTGATATCAATATGTATAAGCTGTTATTGAATGGCATAGCTAGCTACGGAGATACTGCTGCTGTGGGCTTGGTTTCAGATGACATGATGAGAGTCTCACAGATTCCTGAACATGCGGTTTATGGTTGTGTCCTGAAGTCTTTCTGTATCTCTGGTAGAATCAGAGAAGCTTTGGAATATATTCGTGAGCTCAAGAATAAAGATGTTATGCTTCTCCCTGAATATTTTGAGACTTTGGTGAAAGGACTGTGCAGGGCTGATAGAATTGCAGATGCTTTGGAGATTTTGGATATTATGAAGAAAAGAGATTTTGTTGATGGAAATGTGTATGGGATTATCATCAATGGATACTTGAGAAAAAATGATGTTTCTAGAGCACTTGATCTGTTTCGTAGTATGAAAGAATGTGGATATTTGCCTACTACTTCTACCTACACTGAACTGATGCAGCACCTCTTCAATGAGAATGAGTATCAGCAAGGCTGTGAGCTGTATGATGAGATGCTTGAAAGTGGAGTTGAGCCAGATAGTGTGGCCGTTACAGCCATGGTTGCAGGCCACGTCCGCCAAAACCATATATCTGAAGCATGGAAAATATTTAATGATATGAAGGACAAAGGCATTAAACCCACTTCAAAGTTGTATTTAGTATTTATCAAGGAGCTTTGTAGAATTTCAAGGACAGATGAGATTCTGAAGGTCTTGGTTCATATGCGGGCATCTGATATGCGCAATAAAGATGACATATTCAATTGGGTTGTACTTCATATGGAGAAAAAGGGAGAGATAGATAGCCTTGAAAAAGTAAAGCAGATGCAAAGTCTTTATAAATTGCAGCCTCAAGATGGAGAGGTATCAAGCAGTGATTCATCTAGTGGAGAGAGGACCAATACAGTGTTGGAGTTGCTACCAAAGAAGATGGATCCCTTATTGAATTCTGATGCTTATGATGACAAGGATTTGCAAGAAATTTGTAAAATTCTGTCCTCTTCAACTGACTGGTGCTTCATTCAAGAAGTTTTGGAGAAGTCTGCTGTTGATTACACTCCAGGACTCGTTCTGGAAATTTTGAGGTATCACAGTGGGCATGGTTCAGTAGCATTACAGTTTTTCTCGTGGGTAGGAAAGCAATCTGGTTATTGCCACACTACTGATACTTACAACATGGCTATCAAAATTGCAGGGCGTGGGAAAGATTTCAAGCACATGAGGAACCTTTTCTTTGAAATGAGGAGAAACAGTTTCTCAATAACACAAGATACATGGACAATAATGATAATGCAATATGGTCGAACAGGTCTCACAGAGATTGCTCTTCAGTTTTTCAGAGAGATGAAAAGTAATTGCAACCCAACTGGCGGTACCTATAAGTATTTGATCATATCTCTTTGTGGGAGAAAAGGTCGAAGGGTAGATGAAGCAATTAAAATATTCCAGGAGATGATCCGTGCTGCACATATACCTGACAAAGAGTTGGTTGAAACTTACGTTGGTTGTTTATGTGAAGTTGGTAAGCTGTCAGATGCTAGAAGATGTATAGATTATCTTTCCAAAGTTGGTTTTACCACCTCTCTTGGTTGTTCCTTGTACATTAGGGCTCTTTGTCGAGCTGGGAAGTTACAAGAAGCTTCTGCGTTGATGGATGATATTGGGGAAGAGCGATCCACATTGGATCGATATACTTATGGGAGCTTTGTTCATGGACTTTTGCGGAGTGGACAAGTAGAAGAAGCACTGGCCAAGGTGGAGTCTATGAAGCAGGCTGGCATGAAGCCAACCGTTCATGTTTATACATCCTTAATAGTTCATTTCTTTAAGGAGAAGCAGATCAAAAGGGCATTAGAAATTTTCAATGAAATGCAACAGGAAGGATGTGAACCGACGGTAGTTACTTATTCCACCCTTATCCGAGGGTACATGAACATGGAGATGATTGCTGAAGCTTGGAGTGTCTTTCACAACATGAAACTGAAAGGGCCATTGCCGGATTTCAAAACTTATTCAATGTTCCTTCATTGTCTTTGTAAGGCAGGGAAATCAGAAGAAGCCATGCAGCTTATATCTGAAATGTTGAACAGTGGGATTGTTCCCAGTGTTGTCAATTTTCGAACTGTATTTTACGGACTTAACCGAGAAGGTAAGCAAGATTTGGCTCGCATTGTAATGGAACAGAAGTCATCTTTGATTAGAAAACGTAAGTTCTTAATATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

1033

Amino Acids

117.6

Weight (kDa)

7.24

Isoelectric Point (pI)

27.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	194 - 240	2.6e-06	PPR repeat family
PPR_2	PF13041	227 - 275	9.5e-12	PPR repeat family
PPR_2	PF13041	406 - 445	1.9e-08	PPR repeat family
PPR_long	PF17177	414 - 542	8.4e-08	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	436 - 482	8.3e-09	PPR repeat family
PPR_2	PF13041	471 - 520	5.2e-12	PPR repeat family
PPR_2	PF13041	717 - 760	3.5e-06	PPR repeat family
TPR_24	PF23276	832 - 950	1.7e-07	Fungal tetratrico peptide repeats
PPR_2	PF13041	857 - 897	9e-06	PPR repeat family
PPR_long	PF17177	867 - 995	2.6e-10	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	879 - 935	5.1e-13	Pentatricopeptide repeat domain
PPR_2	PF13041	888 - 936	9.9e-16	PPR repeat family
TPR_24	PF23276	891 - 982	9.3e-07	Fungal tetratrico peptide repeats
PPR_1	PF12854	920 - 952	8.1e-07	PPR repeat
PPR_2	PF13041	923 - 972	6.7e-14	PPR repeat family
PPR_1	PF12854	954 - 986	2.6e-07	PPR repeat
PPR	PF01535	962 - 991	8.9e-06	PPR repeat
PPR_2	PF13041	962 - 1005	1.1e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0007077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06400
fragaria_vesca	FvH4_6g20810 FvH4_6g20810 FvH4_6g20810
malus_domestica	MD12G1044100.v1.1
prunus_persica	Prupe.7G091000_v2.0.a1
pyrus_communis	pycom12g03800
rosa_chinensis	RchiOBHm_Chr3g0476881
rosa_laevigata	RLG00000023746
rosa_multiflora	Rmu_sc0000288.1_g000033
rosa_roxburghii	Rroxscaffold_6G00403680 Rroxscaffold_6G00404930
rosa_rugosa	Rorug03G0157400
rosa_samantha	Rh3AG207600 Rh3AG229900 Rh3BG240200 Rh3BG241300 Rh3CG233900 Rh3CG235000 Rh3CG235700 Rh3CG259900 Rh3DG233900
rosa_wichuraiana	Rw0G011140 Rw3G018900 Rw3G020670

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	591, 1716
Acc16I	TGCGCA	1 cut(s)	1619
Acc65I	GGTACC	1 cut(s)	2249
AccB1I	GGYRCC	1 cut(s)	2249
AccB7I	CCANNNNNTGG	1 cut(s)	36
AccBSI	CCGCTC	1 cut(s)	448
AciI	CCGC	8 cut(s)	419, 448, 774, 1004, 1453, 1603, 2247, 2599
AclWI	GGATC	5 cut(s)	1805, 1818, 2326, 2544, 2568
AcoI	YGGCCR	2 cut(s)	1422, 2625
AcsI	RAATTY	8 cut(s)	77, 854, 1560, 1822, 1857, 1866, 1953, 2733
AcuI	CTGAAG	6 cut(s)	521, 1043, 1491, 1604, 2189, 2847
AdeI	CACNNNGTG	1 cut(s)	824
AfaI	GTAC	5 cut(s)	873, 1650, 2251, 2477, 2804
AfiI	CCNNNNNNNGG	6 cut(s)	36, 240, 270, 271, 1733, 2246
AflIII	ACRYGT	1 cut(s)	214
AjiI	CACGTC	2 cut(s)	844, 1450
AjnI	CCWGG	3 cut(s)	692, 1936, 2322
AjuI	GAANNNNNNNTTGG	4 cut(s)	252, 284, 2361, 2393
Alw21I	GWGCWC	5 cut(s)	44, 167, 820, 1080, 1267
Alw26I	GTCTC	3 cut(s)	988, 1112, 2192
Alw44I	GTGCAC	1 cut(s)	816
AlwI	GGATC	5 cut(s)	1805, 1818, 2326, 2544, 2568
AoxI	GGCC	4 cut(s)	1422, 1444, 2625, 2864
ApaLI	GTGCAC	1 cut(s)	816
ApeKI	GCWGC	6 cut(s)	827, 947, 1336, 1723, 2339, 2941
ApoI	RAATTY	8 cut(s)	77, 854, 1560, 1822, 1857, 1866, 1953, 2733
Asp700I	GAANNNNTTC	4 cut(s)	1028, 1068, 2084, 2105
Asp718I	GGTACC	1 cut(s)	2249
AspLEI	GCGC	1 cut(s)	1620
AspS9I	GGNCC	3 cut(s)	696, 1773, 2864
AsuHPI	GGTGA	4 cut(s)	290, 316, 562, 1138
AsuII	TTCGAA	2 cut(s)	357, 2995
AsuNHI	GCTAGC	1 cut(s)	929
AvaII	GGWCC	2 cut(s)	696, 1773
BaeGI	GKGCMC	1 cut(s)	820
BalI	TGGCCA	1 cut(s)	2627
BamHI	GGATCC	1 cut(s)	1810
BanI	GGYRCC	1 cut(s)	2249
BanII	GRGCYC	4 cut(s)	44, 167, 1080, 2488
BauI	CACGAG	2 cut(s)	670, 2002
Bbv12I	GWGCWC	5 cut(s)	44, 167, 820, 1080, 1267
BbvI	GCAGC	6 cut(s)	814, 934, 1348, 1735, 2326, 2953
BccI	CCATC	9 cut(s)	124, 244, 273, 433, 652, 1199, 1727, 1801, 2521
BceAI	ACGGC	1 cut(s)	1409
BcgI	CGANNNNNNTGC	2 cut(s)	2159, 2193
BciT130I	CCWGG	3 cut(s)	694, 1938, 2324
BciVI	GTATCC	1 cut(s)	1229
BclI	TGATCA	1 cut(s)	2265
BcoDI	GTCTC	3 cut(s)	988, 1112, 2192
BfaI	CTAG	4 cut(s)	930, 1260, 1761, 2415
BfuI	GTATCC	1 cut(s)	1229
BglI	GCCNNNNNGGC	1 cut(s)	845
BisI	GCNGC	6 cut(s)	828, 948, 1337, 1724, 2340, 2942
BlsI	GCNGC	6 cut(s)	829, 949, 1338, 1725, 2341, 2943
Bme1390I	CCNGG	3 cut(s)	694, 1938, 2324
Bme18I	GGWCC	2 cut(s)	696, 1773
BmgBI	CACGTC	2 cut(s)	844, 1450
BmgT120I	GGNCC	3 cut(s)	696, 1773, 2864
BmiI	GGNNCC	3 cut(s)	1812, 2102, 2251
BmrFI	CCNGG	3 cut(s)	694, 1938, 2324
BmrI	ACTGGG	3 cut(s)	323, 380, 2973
BmsI	GCATC	7 cut(s)	1150, 1323, 1380, 1616, 1692, 1819, 2401
BmtI	GCTAGC	1 cut(s)	933
BmuI	ACTGGG	3 cut(s)	323, 380, 2973
BpmI	CTGGAG	1 cut(s)	1920
Bpu10I	CCTNAGC	1 cut(s)	300
Bpu14I	TTCGAA	2 cut(s)	357, 2995
BpuEI	CTTGAG	3 cut(s)	1064, 1261, 1713
Bsa29I	ATCGAT	1 cut(s)	2563
BsaAI	YACGTR	1 cut(s)	815
BsaBI	GATNNNNATC	1 cut(s)	1226
BsaI	GGTCTC	1 cut(s)	2192
BsaJI	CCNNGG	4 cut(s)	792, 1434, 2628, 2797
BsaXI	ACNNNNNCTCC	6 cut(s)	434, 464, 2113, 2143, 2275, 2305
Bsc4I	CCNNNNNNNGG	6 cut(s)	36, 240, 270, 271, 1733, 2246
Bse1I	ACTGG	6 cut(s)	318, 386, 1892, 2248, 2628, 2979
Bse3DI	GCAATG	2 cut(s)	855, 2867
Bse8I	GATNNNNATC	1 cut(s)	1226
BseBI	CCWGG	3 cut(s)	694, 1938, 2324
BseCI	ATCGAT	1 cut(s)	2563
BseDI	CCNNGG	4 cut(s)	792, 1434, 2628, 2797
BseGI	GGATG	3 cut(s)	2536, 2681, 2765
BseJI	GATNNNNATC	1 cut(s)	1226
BseLI	CCNNNNNNNGG	6 cut(s)	36, 240, 270, 271, 1733, 2246
BseMI	GCAATG	2 cut(s)	855, 2867
BseNI	ACTGG	6 cut(s)	318, 386, 1892, 2248, 2628, 2979
BseRI	GAGGAG	3 cut(s)	458, 668, 2134
BseSI	GKGCMC	1 cut(s)	820
BseXI	GCAGC	6 cut(s)	814, 934, 1348, 1735, 2326, 2953
BseYI	CCCAGC	2 cut(s)	611, 2498
BsgI	GTGCAG	2 cut(s)	1159, 2325
BshFI	GGCC	4 cut(s)	1424, 1446, 2627, 2866
BshNI	GGYRCC	1 cut(s)	2249
BshVI	ATCGAT	1 cut(s)	2563
BsiHKAI	GWGCWC	5 cut(s)	44, 167, 820, 1080, 1267
BsiSI	CCGG	1 cut(s)	2873
BslI	CCNNNNNNNGG	6 cut(s)	36, 240, 270, 271, 1733, 2246
BsmAI	GTCTC	3 cut(s)	988, 1112, 2192
BsmI	GAATGC	1 cut(s)	313
BsnI	GGCC	4 cut(s)	1424, 1446, 2627, 2866
Bso31I	GGTCTC	1 cut(s)	2192
Bsp119I	TTCGAA	2 cut(s)	357, 2995
Bsp1286I	GDGCHC	6 cut(s)	44, 167, 820, 1080, 1267, 2488
Bsp1407I	TGTACA	1 cut(s)	2475
Bsp143I	GATC	7 cut(s)	1270, 1810, 2265, 2331, 2549, 2560, 2715
Bsp19I	CCATGG	1 cut(s)	1434
BspACI	CCGC	8 cut(s)	419, 448, 774, 1004, 1453, 1603, 2247, 2599
BspANI	GGCC	4 cut(s)	1424, 1446, 2627, 2866
BspDI	ATCGAT	1 cut(s)	2563
BspHI	TCATGA	2 cut(s)	394, 3098
BspLI	GGNNCC	3 cut(s)	1812, 2102, 2251
BspOI	GCTAGC	1 cut(s)	933
BspPI	GGATC	5 cut(s)	1805, 1818, 2326, 2544, 2568
BspQI	GCTCTTC	3 cut(s)	733, 2208, 2538
BspT104I	TTCGAA	2 cut(s)	357, 2995
BspT107I	GGYRCC	1 cut(s)	2249
BspTNI	GGTCTC	1 cut(s)	2192
BsrBI	CCGCTC	1 cut(s)	448
BsrDI	GCAATG	2 cut(s)	855, 2867
BsrGI	TGTACA	1 cut(s)	2475
BsrI	ACTGG	6 cut(s)	318, 386, 1892, 2248, 2628, 2979
BssECI	CCNNGG	4 cut(s)	792, 1434, 2628, 2797
BssMI	GATC	7 cut(s)	1270, 1810, 2265, 2331, 2549, 2560, 2715
BssSI	CACGAG	2 cut(s)	670, 2002
BssT1I	CCWWGG	2 cut(s)	1434, 2628
Bst2BI	CACGAG	2 cut(s)	670, 2002
Bst2UI	CCWGG	3 cut(s)	694, 1938, 2324
Bst6I	CTCTTC	6 cut(s)	497, 733, 1349, 1882, 2208, 2538
BstAPI	GCANNNNNTGC	1 cut(s)	824
BstAUI	TGTACA	1 cut(s)	2475
BstBAI	YACGTR	1 cut(s)	815
BstBI	TTCGAA	2 cut(s)	357, 2995
BstC8I	GCNNGC	6 cut(s)	931, 1444, 1605, 2649, 2653, 3043
BstDEI	CTNAG	6 cut(s)	111, 123, 195, 300, 582, 726
BstDSI	CCRYGG	2 cut(s)	792, 1434
BstF5I	GGATG	3 cut(s)	2536, 2681, 2765
BstHHI	GCGC	1 cut(s)	1620
BstKTI	GATC	7 cut(s)	1273, 1813, 2268, 2334, 2552, 2563, 2718
BstMAI	GTCTC	3 cut(s)	988, 1112, 2192
BstMBI	GATC	7 cut(s)	1270, 1810, 2265, 2331, 2549, 2560, 2715
BstMWI	GCNNNNNNNGC	9 cut(s)	112, 617, 824, 836, 845, 930, 1430, 1439, 1452
BstNI	CCWGG	3 cut(s)	694, 1938, 2324
BstNSI	RCATGY	2 cut(s)	218, 1004
BstSCI	CCNGG	3 cut(s)	692, 1936, 2322
BstSLI	GKGCMC	1 cut(s)	820
BstV1I	GCAGC	6 cut(s)	814, 934, 1348, 1735, 2326, 2953
BstX2I	RGATCY	1 cut(s)	1810
BstXI	CCANNNNNNTGG	1 cut(s)	716
BstYI	RGATCY	1 cut(s)	1810
Bsu15I	ATCGAT	1 cut(s)	2563
BsuI	GTATCC	1 cut(s)	1229
BsuRI	GGCC	4 cut(s)	1424, 1446, 2627, 2866
BsuTUI	ATCGAT	1 cut(s)	2563
BtgI	CCRYGG	2 cut(s)	792, 1434
BtrI	CACGTC	2 cut(s)	844, 1450
BtsCI	GGATG	3 cut(s)	2536, 2681, 2765
BtsI	GCAGTG	1 cut(s)	1756
BtsIMutI	CAGTG	9 cut(s)	190, 311, 1323, 1756, 1788, 1975, 2621, 2971, 2986
Cac8I	GCNNGC	6 cut(s)	931, 1444, 1605, 2649, 2653, 3043
CciI	TCATGA	2 cut(s)	394, 3098
CfoI	GCGC	1 cut(s)	1620
Cfr13I	GGNCC	3 cut(s)	696, 1773, 2864
ClaI	ATCGAT	1 cut(s)	2563
CseI	GACGC	1 cut(s)	112
Csp6I	GTAC	5 cut(s)	872, 1649, 2250, 2476, 2803
CspCI	CAANNNNNGTGG	2 cut(s)	2443, 2478
CviQI	GTAC	5 cut(s)	872, 1649, 2250, 2476, 2803
DdeI	CTNAG	6 cut(s)	111, 123, 195, 300, 582, 726
DpnI	GATC	7 cut(s)	1272, 1812, 2267, 2333, 2551, 2562, 2717
DpnII	GATC	7 cut(s)	1270, 1810, 2265, 2331, 2549, 2560, 2715
DraI	TTTAAA	1 cut(s)	514
DraIII	CACNNNGTG	1 cut(s)	824
EaeI	YGGCCR	2 cut(s)	1422, 2625
Eam1104I	CTCTTC	6 cut(s)	497, 733, 1349, 1882, 2208, 2538
EarI	CTCTTC	6 cut(s)	497, 733, 1349, 1882, 2208, 2538
EciI	GGCGGA	2 cut(s)	434, 1442
Ecl136II	GAGCTC	3 cut(s)	42, 165, 1078
Eco130I	CCWWGG	2 cut(s)	1434, 2628
Eco24I	GRGCYC	4 cut(s)	44, 167, 1080, 2488
Eco31I	GGTCTC	1 cut(s)	2192
Eco32I	GATATC	1 cut(s)	895
Eco47I	GGWCC	2 cut(s)	696, 1773
Eco53kI	GAGCTC	3 cut(s)	42, 165, 1078
Eco57I	CTGAAG	6 cut(s)	521, 1043, 1491, 1604, 2189, 2847
EcoICRI	GAGCTC	3 cut(s)	42, 165, 1078
EcoRI	GAATTC	1 cut(s)	1822
EcoRII	CCWGG	3 cut(s)	692, 1936, 2322
EcoRV	GATATC	1 cut(s)	895
EcoT14I	CCWWGG	2 cut(s)	1434, 2628
EcoT38I	GRGCYC	4 cut(s)	44, 167, 1080, 2488
ErhI	CCWWGG	2 cut(s)	1434, 2628
FalI	AAGNNNNNCTT	2 cut(s)	494, 526
FauI	CCCGC	1 cut(s)	1596
FauNDI	CATATG	2 cut(s)	1599, 1656
FbaI	TGATCA	1 cut(s)	2265
Fnu4HI	GCNGC	6 cut(s)	828, 948, 1337, 1724, 2340, 2942
FokI	GGATG	3 cut(s)	2543, 2668, 2772
FriOI	GRGCYC	4 cut(s)	44, 167, 1080, 2488
Fsp4HI	GCNGC	6 cut(s)	828, 948, 1337, 1724, 2340, 2942
FspBI	CTAG	4 cut(s)	930, 1260, 1761, 2415
FspI	TGCGCA	1 cut(s)	1619
GlaI	GCGC	1 cut(s)	1619
GluI	GCNGC	6 cut(s)	828, 948, 1337, 1724, 2340, 2942
GsaI	CCCAGC	2 cut(s)	615, 2502
GsuI	CTGGAG	1 cut(s)	1920
HaeIII	GGCC	4 cut(s)	1424, 1446, 2627, 2866
HapII	CCGG	1 cut(s)	2873
HgaI	GACGC	1 cut(s)	112
HhaI	GCGC	1 cut(s)	1620
Hin6I	GCGC	1 cut(s)	1618
HinP1I	GCGC	1 cut(s)	1618
HincII	GTYRAC	1 cut(s)	490
HindII	GTYRAC	1 cut(s)	490
HindIII	AAGCTT	3 cut(s)	1056, 2514, 2829
HpaII	CCGG	1 cut(s)	2873
HphI	GGTGA	4 cut(s)	290, 316, 562, 1138
Hpy166II	GTNNAC	4 cut(s)	490, 818, 2606, 2765
Hpy8I	GTNNAC	4 cut(s)	490, 818, 2606, 2765
Hpy99I	CGWCG	3 cut(s)	106, 845, 2773
HpyAV	CCTTC	9 cut(s)	557, 715, 871, 1492, 1579, 2289, 2750, 2909, 3017
HpyCH4IV	ACGT	5 cut(s)	814, 843, 1449, 2376, 3082
HpyF10VI	GCNNNNNNNGC	9 cut(s)	112, 617, 824, 836, 845, 930, 1430, 1439, 1452
HpyF3I	CTNAG	6 cut(s)	111, 123, 195, 300, 582, 726
HpySE526I	ACGT	5 cut(s)	814, 843, 1449, 2376, 3082
HspAI	GCGC	1 cut(s)	1618
KpnI	GGTACC	1 cut(s)	2253
Ksp22I	TGATCA	1 cut(s)	2265
Kzo9I	GATC	7 cut(s)	1270, 1810, 2265, 2331, 2549, 2560, 2715
LguI	GCTCTTC	3 cut(s)	733, 2208, 2538
LmnI	GCTCC	4 cut(s)	39, 445, 1549, 2577
Lsp1109I	GCAGC	6 cut(s)	814, 934, 1348, 1735, 2326, 2953
LweI	GCATC	7 cut(s)	1150, 1323, 1380, 1616, 1692, 1819, 2401
MaeI	CTAG	4 cut(s)	930, 1260, 1761, 2415
MaeII	ACGT	5 cut(s)	814, 843, 1449, 2376, 3082
MaeIII	GTNAC	5 cut(s)	400, 572, 1426, 2505, 2776
MalI	GATC	7 cut(s)	1272, 1812, 2267, 2333, 2551, 2562, 2717
MbiI	CCGCTC	1 cut(s)	448
MboI	GATC	7 cut(s)	1270, 1810, 2265, 2331, 2549, 2560, 2715
MfeI	CAATTG	1 cut(s)	1639
MflI	RGATCY	1 cut(s)	1810
MhlI	GDGCHC	6 cut(s)	44, 167, 820, 1080, 1267, 2488
MlsI	TGGCCA	1 cut(s)	2627
MluNI	TGGCCA	1 cut(s)	2627
MlyI	GAGTC	4 cut(s)	782, 990, 1935, 2645
MmeI	TCCRAC	3 cut(s)	17, 715, 1767
Mox20I	TGGCCA	1 cut(s)	2627
MroXI	GAANNNNTTC	4 cut(s)	1028, 1068, 2084, 2105
MscI	TGGCCA	1 cut(s)	2627
MslI	CAYNNNNRTG	3 cut(s)	2810, 2816, 3050
Msp20I	TGGCCA	1 cut(s)	2627
MspI	CCGG	1 cut(s)	2873
MspR9I	CCNGG	3 cut(s)	694, 1938, 2324
MunI	CAATTG	1 cut(s)	1639
Mva1269I	GAATGC	1 cut(s)	313
MvaI	CCWGG	3 cut(s)	694, 1938, 2324
MwoI	GCNNNNNNNGC	9 cut(s)	112, 617, 824, 836, 845, 930, 1430, 1439, 1452
NcoI	CCATGG	1 cut(s)	1434
NdeI	CATATG	2 cut(s)	1599, 1656
NdeII	GATC	7 cut(s)	1270, 1810, 2265, 2331, 2549, 2560, 2715
NheI	GCTAGC	1 cut(s)	929
NlaIV	GGNNCC	3 cut(s)	1812, 2102, 2251
NmuCI	GTSAC	1 cut(s)	572
NsbI	TGCGCA	1 cut(s)	1619
NspI	RCATGY	2 cut(s)	218, 1004
NspV	TTCGAA	2 cut(s)	357, 2995
PagI	TCATGA	2 cut(s)	394, 3098
PciI	ACATGT	1 cut(s)	214
PciSI	GCTCTTC	3 cut(s)	733, 2208, 2538
PctI	GAATGC	1 cut(s)	313
PdmI	GAANNNNTTC	4 cut(s)	1028, 1068, 2084, 2105
PfeI	GAWTC	7 cut(s)	69, 354, 476, 991, 1047, 1579, 1754
PflMI	CCANNNNNTGG	1 cut(s)	36
PfoI	TCCNGGA	2 cut(s)	1936, 2322
PkrI	GCNGC	6 cut(s)	829, 949, 1338, 1725, 2341, 2943
PleI	GAGTC	4 cut(s)	782, 989, 1935, 2644
PpsI	GAGTC	4 cut(s)	782, 989, 1935, 2644
Ppu21I	YACGTR	1 cut(s)	815
PscI	ACATGT	1 cut(s)	214
PsiI	TTATAA	2 cut(s)	591, 1716
Psp124BI	GAGCTC	3 cut(s)	44, 167, 1080
Psp6I	CCWGG	3 cut(s)	692, 1936, 2322
PspFI	CCCAGC	2 cut(s)	611, 2498
PspGI	CCWGG	3 cut(s)	692, 1936, 2322
PspN4I	GGNNCC	3 cut(s)	1812, 2102, 2251
PspPI	GGNCC	3 cut(s)	696, 1773, 2864
PsuI	RGATCY	1 cut(s)	1810
RsaI	GTAC	5 cut(s)	873, 1650, 2251, 2477, 2804
RsaNI	GTAC	5 cut(s)	872, 1649, 2250, 2476, 2803
RseI	CAYNNNNRTG	3 cut(s)	2810, 2816, 3050
SacI	GAGCTC	3 cut(s)	44, 167, 1080
SapI	GCTCTTC	3 cut(s)	733, 2208, 2538
SatI	GCNGC	6 cut(s)	828, 948, 1337, 1724, 2340, 2942
Sau3AI	GATC	7 cut(s)	1270, 1810, 2265, 2331, 2549, 2560, 2715
Sau96I	GGNCC	3 cut(s)	696, 1773, 2864
SchI	GAGTC	4 cut(s)	782, 990, 1935, 2645
ScrFI	CCNGG	3 cut(s)	694, 1938, 2324
SduI	GDGCHC	6 cut(s)	44, 167, 820, 1080, 1267, 2488
SfaNI	GCATC	7 cut(s)	1150, 1323, 1380, 1616, 1692, 1819, 2401
SfuI	TTCGAA	2 cut(s)	357, 2995
SinI	GGWCC	2 cut(s)	696, 1773
SmiMI	CAYNNNNRTG	3 cut(s)	2810, 2816, 3050
SmlI	CTYRAG	3 cut(s)	1079, 1240, 1728
SmoI	CTYRAG	3 cut(s)	1079, 1240, 1728
SsiI	CCGC	8 cut(s)	419, 448, 774, 1004, 1453, 1603, 2247, 2599
SspI	AATATT	3 cut(s)	1112, 1485, 2319
SspMI	CTAG	4 cut(s)	930, 1260, 1761, 2415
SstI	GAGCTC	3 cut(s)	44, 167, 1080
StyD4I	CCNGG	3 cut(s)	692, 1936, 2322
StyI	CCWWGG	2 cut(s)	1434, 2628
TaiI	ACGT	5 cut(s)	817, 846, 1452, 2379, 3085
TaqI	TCGA	7 cut(s)	357, 437, 2179, 2293, 2494, 2563, 2995
TatI	WGTACW	2 cut(s)	1648, 2475
TfiI	GAWTC	7 cut(s)	69, 354, 476, 991, 1047, 1579, 1754
TscAI	CASTG	9 cut(s)	190, 318, 1330, 1756, 1788, 1975, 2628, 2971, 2986
TseFI	GTSAC	1 cut(s)	572
TseI	GCWGC	6 cut(s)	827, 947, 1336, 1723, 2339, 2941
Tsp45I	GTSAC	1 cut(s)	572
TspGWI	ACGGA	4 cut(s)	781, 951, 2324, 3024
TspRI	CASTG	9 cut(s)	190, 318, 1330, 1756, 1788, 1975, 2628, 2971, 2986
Van91I	CCANNNNNTGG	1 cut(s)	36
VneI	GTGCAC	1 cut(s)	816
VpaK11BI	GGWCC	2 cut(s)	696, 1773
XapI	RAATTY	8 cut(s)	77, 854, 1560, 1822, 1857, 1866, 1953, 2733
XbaI	TCTAGA	1 cut(s)	1259
XceI	RCATGY	2 cut(s)	218, 1004
XcmI	CCANNNNNNNNNTGG	2 cut(s)	272, 1783
XmnI	GAANNNNTTC	4 cut(s)	1028, 1068, 2084, 2105
XspI	CTAG	4 cut(s)	930, 1260, 1761, 2415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.