Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0007077

Physical Location & Seq

Genomic Coordinates Reverse (-)

22738511 .. 22739230

Gene Structure 720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG241300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGCCAAGATGGTCTGGTTGGCTCTCAACGGCCGGGTCTCCTCTTGTTTGACTGTCGCTGACGAGCTCGCCACCTCCCTCAAAACAGGAGATATCGGCCCTTTCAATATTGATAACTTTGCGACGCTCACTAAGCCATGTAAGCCCAACAAAGCCCACCACTTGAAACAACAACAAGAACCGAGCTCGTTTGGATCGCTGTTCAGTGAAATTACTGGGATTTTAGGGGCTGAAAATGCCACTGCGGATAAAACCCCATCTGGTTTTTTTATTTCCAAGGAAACCCATCTTTGGGTTGGTGAGTTGGGGAAGAGAGGACACCTTGCACCGCAGCTCTATAGAAATGCCAAGGTTGATGCACTGGAAGAAAAGGAAGATGTAGCTGAAACTGATGTTAGCCCGGTCGTTCATGAGGTTACGAAGATTGTCAGGGCGGAAAATGGTTTGGTTTCGATGGAGAAGCGGTTAGACGAGTTGGGTTTTCAGTTAGATTCAGAGATTGTTGACAAAGTTCTGAAGAGGTGCTTTAAAGTGCCACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

180

Amino Acids

19.81

Weight (kDa)

6.08

Isoelectric Point (pI)

35.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06400
fragaria_vesca	FvH4_6g20810 FvH4_6g20810 FvH4_6g20810
malus_domestica	MD12G1044100.v1.1
prunus_persica	Prupe.7G091000_v2.0.a1
pyrus_communis	pycom12g03800
rosa_chinensis	RchiOBHm_Chr3g0476881
rosa_laevigata	RLG00000023746
rosa_multiflora	Rmu_sc0000288.1_g000033
rosa_roxburghii	Rroxscaffold_6G00403680 Rroxscaffold_6G00404930
rosa_rugosa	Rorug03G0157400
rosa_samantha	Rh3AG207600 Rh3AG229900 Rh3BG240200 Rh3BG241300 Rh3CG233900 Rh3CG235000 Rh3CG235700 Rh3CG259900 Rh3DG233900
rosa_wichuraiana	Rw0G011140 Rw3G018900 Rw3G020670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	245, 329, 434, 463
AclWI	GGATC	1 cut(s)	202
AcoI	YGGCCR	2 cut(s)	3, 31
AcuI	CTGAAG	1 cut(s)	536
AfiI	CCNNNNNNNGG	2 cut(s)	291, 292
AgsI	TTSAA	2 cut(s)	106, 166
AluBI	AGCT	4 cut(s)	67, 186, 334, 383
AluI	AGCT	4 cut(s)	67, 186, 334, 383
Alw21I	GWGCWC	2 cut(s)	69, 188
Alw26I	GTCTC	1 cut(s)	43
AlwI	GGATC	1 cut(s)	202
AoxI	GGCC	3 cut(s)	3, 31, 97
ApeKI	GCWGC	1 cut(s)	331
AspS9I	GGNCC	1 cut(s)	98
AsuC2I	CCSGG	2 cut(s)	35, 401
AsuHPI	GGTGA	1 cut(s)	311
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	2 cut(s)	69, 188
Bbv12I	GWGCWC	2 cut(s)	69, 188
BbvI	GCAGC	1 cut(s)	343
BccI	CCATC	4 cut(s)	4, 265, 294, 448
BceAI	ACGGC	1 cut(s)	46
BcnI	CCSGG	2 cut(s)	35, 401
BcoDI	GTCTC	1 cut(s)	43
BfmI	CTRYAG	1 cut(s)	337
BisI	GCNGC	1 cut(s)	332
BlsI	GCNGC	1 cut(s)	333
Bme1390I	CCNGG	2 cut(s)	35, 401
BmgT120I	GGNCC	1 cut(s)	98
BmrFI	CCNGG	2 cut(s)	35, 401
BmrI	ACTGGG	1 cut(s)	225
BmsI	GCATC	1 cut(s)	346
BmuI	ACTGGG	1 cut(s)	225
BpuMI	CCSGG	2 cut(s)	35, 401
BsaI	GGTCTC	1 cut(s)	43
BsaJI	CCNNGG	2 cut(s)	276, 348
BsaXI	ACNNNNNCTCC	2 cut(s)	449, 479
Bsc4I	CCNNNNNNNGG	2 cut(s)	291, 292
Bse1I	ACTGG	2 cut(s)	220, 366
BseDI	CCNNGG	2 cut(s)	276, 348
BseLI	CCNNNNNNNGG	2 cut(s)	291, 292
BseNI	ACTGG	2 cut(s)	220, 366
BseRI	GAGGAG	1 cut(s)	31
BseX3I	CGGCCG	1 cut(s)	31
BseXI	GCAGC	1 cut(s)	343
Bsh1285I	CGRYCG	2 cut(s)	34, 405
BshFI	GGCC	3 cut(s)	5, 33, 99
BsiEI	CGRYCG	2 cut(s)	34, 405
BsiHKAI	GWGCWC	2 cut(s)	69, 188
BsiSI	CCGG	2 cut(s)	34, 401
BslI	CCNNNNNNNGG	2 cut(s)	291, 292
BsmAI	GTCTC	1 cut(s)	43
BsnI	GGCC	3 cut(s)	5, 33, 99
Bso31I	GGTCTC	1 cut(s)	43
Bsp1286I	GDGCHC	2 cut(s)	69, 188
Bsp143I	GATC	1 cut(s)	194
BspACI	CCGC	4 cut(s)	245, 329, 434, 463
BspANI	GGCC	3 cut(s)	5, 33, 99
BspHI	TCATGA	1 cut(s)	409
BspPI	GGATC	1 cut(s)	202
BspTNI	GGTCTC	1 cut(s)	43
BsrI	ACTGG	2 cut(s)	220, 366
BssECI	CCNNGG	2 cut(s)	276, 348
BssMI	GATC	1 cut(s)	194
BssT1I	CCWWGG	2 cut(s)	276, 348
Bst4CI	ACNGT	1 cut(s)	55
Bst6I	CTCTTC	2 cut(s)	305, 512
BstC8I	GCNNGC	1 cut(s)	69
BstDEI	CTNAG	1 cut(s)	132
BstKTI	GATC	1 cut(s)	197
BstMAI	GTCTC	1 cut(s)	43
BstMBI	GATC	1 cut(s)	194
BstMCI	CGRYCG	2 cut(s)	34, 405
BstMWI	GCNNNNNNNGC	3 cut(s)	133, 142, 236
BstSCI	CCNGG	2 cut(s)	33, 399
BstSFI	CTRYAG	1 cut(s)	337
BstV1I	GCAGC	1 cut(s)	343
BstZI	CGGCCG	1 cut(s)	31
BsuRI	GGCC	3 cut(s)	5, 33, 99
BtsI	GCAGTG	1 cut(s)	240
BtsIMutI	CAGTG	3 cut(s)	211, 240, 359
Cac8I	GCNNGC	1 cut(s)	69
CciI	TCATGA	1 cut(s)	409
Cfr13I	GGNCC	1 cut(s)	98
CseI	GACGC	1 cut(s)	133
CviAII	CATG	2 cut(s)	138, 410
DdeI	CTNAG	1 cut(s)	132
DpnI	GATC	1 cut(s)	196
DpnII	GATC	1 cut(s)	194
DraI	TTTAAA	1 cut(s)	529
EaeI	YGGCCR	2 cut(s)	3, 31
EagI	CGGCCG	1 cut(s)	31
Eam1104I	CTCTTC	2 cut(s)	305, 512
EarI	CTCTTC	2 cut(s)	305, 512
EciI	GGCGGA	1 cut(s)	449
Ecl136II	GAGCTC	2 cut(s)	67, 186
EclXI	CGGCCG	1 cut(s)	31
Eco130I	CCWWGG	2 cut(s)	276, 348
Eco24I	GRGCYC	2 cut(s)	69, 188
Eco31I	GGTCTC	1 cut(s)	43
Eco32I	GATATC	1 cut(s)	94
Eco52I	CGGCCG	1 cut(s)	31
Eco53kI	GAGCTC	2 cut(s)	67, 186
Eco57I	CTGAAG	1 cut(s)	536
EcoICRI	GAGCTC	2 cut(s)	67, 186
EcoRV	GATATC	1 cut(s)	94
EcoT14I	CCWWGG	2 cut(s)	276, 348
EcoT38I	GRGCYC	2 cut(s)	69, 188
ErhI	CCWWGG	2 cut(s)	276, 348
FaeI	CATG	2 cut(s)	141, 413
FaiI	YATR	3 cut(s)	139, 339, 411
FalI	AAGNNNNNCTT	2 cut(s)	509, 541
FatI	CATG	2 cut(s)	137, 409
Fnu4HI	GCNGC	1 cut(s)	332
FriOI	GRGCYC	2 cut(s)	69, 188
Fsp4HI	GCNGC	1 cut(s)	332
GluI	GCNGC	1 cut(s)	332
HaeIII	GGCC	3 cut(s)	5, 33, 99
HapII	CCGG	2 cut(s)	34, 401
HgaI	GACGC	1 cut(s)	133
Hin1II	CATG	2 cut(s)	141, 413
HincII	GTYRAC	1 cut(s)	505
HindII	GTYRAC	1 cut(s)	505
HinfI	GANTC	1 cut(s)	491
HpaII	CCGG	2 cut(s)	34, 401
HphI	GGTGA	1 cut(s)	311
Hpy166II	GTNNAC	1 cut(s)	505
Hpy188I	TCNGA	2 cut(s)	496, 516
Hpy188III	TCNNGA	1 cut(s)	410
Hpy8I	GTNNAC	1 cut(s)	505
Hpy99I	CGWCG	1 cut(s)	127
HpyCH4III	ACNGT	1 cut(s)	55
HpyCH4V	TGCA	2 cut(s)	326, 359
HpyF10VI	GCNNNNNNNGC	3 cut(s)	133, 142, 236
HpyF3I	CTNAG	1 cut(s)	132
Hsp92II	CATG	2 cut(s)	141, 413
Kzo9I	GATC	1 cut(s)	194
LpnPI	CCDG	7 cut(s)	47, 72, 201, 246, 347, 414, 415
Lsp1109I	GCAGC	1 cut(s)	343
LweI	GCATC	1 cut(s)	346
MaeIII	GTNAC	1 cut(s)	415
MalI	GATC	1 cut(s)	196
MboI	GATC	1 cut(s)	194
MboII	GAAGA	5 cut(s)	322, 377, 386, 433, 529
MhlI	GDGCHC	2 cut(s)	69, 188
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	210
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	6 cut(s)	52, 85, 89, 308, 406, 513
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	528, 541
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	34, 401
MspR9I	CCNGG	2 cut(s)	35, 401
MwoI	GCNNNNNNNGC	3 cut(s)	133, 142, 236
NciI	CCSGG	2 cut(s)	35, 401
NdeII	GATC	1 cut(s)	194
NlaIII	CATG	2 cut(s)	141, 413
PagI	TCATGA	1 cut(s)	409
PfeI	GAWTC	1 cut(s)	491
PkrI	GCNGC	1 cut(s)	333
Psp124BI	GAGCTC	2 cut(s)	69, 188
PspPI	GGNCC	1 cut(s)	98
SacI	GAGCTC	2 cut(s)	69, 188
SaqAI	TTAA	2 cut(s)	528, 541
SatI	GCNGC	1 cut(s)	332
Sau3AI	GATC	1 cut(s)	194
Sau96I	GGNCC	1 cut(s)	98
ScrFI	CCNGG	2 cut(s)	35, 401
SduI	GDGCHC	2 cut(s)	69, 188
SetI	ASST	9 cut(s)	69, 77, 188, 324, 336, 354, 385, 417, 524
SfaNI	GCATC	1 cut(s)	346
SfcI	CTRYAG	1 cut(s)	337
Sse9I	AATT	1 cut(s)	210
SsiI	CCGC	4 cut(s)	245, 329, 434, 463
SspI	AATATT	1 cut(s)	109
SstI	GAGCTC	2 cut(s)	69, 188
StyD4I	CCNGG	2 cut(s)	33, 399
StyI	CCWWGG	2 cut(s)	276, 348
TaaI	ACNGT	1 cut(s)	55
TaqI	TCGA	1 cut(s)	452
TasI	AATT	1 cut(s)	210
TfiI	GAWTC	1 cut(s)	491
Tru1I	TTAA	2 cut(s)	528, 541
Tru9I	TTAA	2 cut(s)	528, 541
TscAI	CASTG	3 cut(s)	211, 247, 366
TseI	GCWGC	1 cut(s)	331
TspDTI	ATGAA	1 cut(s)	398
TspRI	CASTG	3 cut(s)	211, 247, 366
XcmI	CCANNNNNNNNNTGG	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.