pentatricopeptide repeat-containing protein At5g06400
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G06400 |
| fragaria_vesca | FvH4_6g20810 FvH4_6g20810 FvH4_6g20810 |
| malus_domestica | MD12G1044100.v1.1 |
| prunus_persica | Prupe.7G091000_v2.0.a1 |
| pyrus_communis | pycom12g03800 |
| rosa_chinensis | RchiOBHm_Chr3g0476881 |
| rosa_laevigata | RLG00000023746 |
| rosa_multiflora | Rmu_sc0000288.1_g000033 |
| rosa_roxburghii | Rroxscaffold_6G00403680 Rroxscaffold_6G00404930 |
| rosa_rugosa | Rorug03G0157400 |
| rosa_samantha | Rh3AG207600 Rh3AG229900 Rh3BG240200 Rh3BG241300 Rh3CG233900 Rh3CG235000 Rh3CG235700 Rh3CG259900 Rh3DG233900 |
| rosa_wichuraiana | Rw0G011140 Rw3G018900 Rw3G020670 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 136, 224 |
| AclWI | GGATC | 1 cut(s) | 181 |
| AfaI | GTAC | 1 cut(s) | 309 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 36, 240, 272, 273 |
| AgsI | TTSAA | 1 cut(s) | 142 |
| AluBI | AGCT | 3 cut(s) | 42, 165, 299 |
| AluI | AGCT | 3 cut(s) | 42, 165, 299 |
| Alw21I | GWGCWC | 2 cut(s) | 44, 301 |
| AlwI | GGATC | 1 cut(s) | 181 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 31 |
| AspLEI | GCGC | 1 cut(s) | 126 |
| AsuHPI | GGTGA | 1 cut(s) | 293 |
| BanII | GRGCYC | 2 cut(s) | 44, 301 |
| Bbv12I | GWGCWC | 2 cut(s) | 44, 301 |
| BccI | CCATC | 2 cut(s) | 244, 275 |
| BmsI | GCATC | 1 cut(s) | 330 |
| BsaWI | WCCGGW | 1 cut(s) | 345 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 36, 240, 272, 273 |
| BseGI | GGATG | 1 cut(s) | 232 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 36, 240, 272, 273 |
| BseMII | CTCAG | 1 cut(s) | 186 |
| BseYI | CCCAGC | 1 cut(s) | 161 |
| BsiHKAI | GWGCWC | 2 cut(s) | 44, 301 |
| BsiSI | CCGG | 1 cut(s) | 346 |
| BslFI | GGGAC | 1 cut(s) | 13 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 36, 240, 272, 273 |
| BsmFI | GGGAC | 1 cut(s) | 13 |
| Bsp1286I | GDGCHC | 2 cut(s) | 44, 301 |
| Bsp1407I | TGTACA | 1 cut(s) | 307 |
| Bsp143I | GATC | 1 cut(s) | 173 |
| BspACI | CCGC | 2 cut(s) | 136, 224 |
| BspCNI | CTCAG | 1 cut(s) | 187 |
| BspPI | GGATC | 1 cut(s) | 181 |
| BsrGI | TGTACA | 1 cut(s) | 307 |
| BssMI | GATC | 1 cut(s) | 173 |
| Bst4CI | ACNGT | 1 cut(s) | 27 |
| Bst6I | CTCTTC | 1 cut(s) | 287 |
| BstAUI | TGTACA | 1 cut(s) | 307 |
| BstC8I | GCNNGC | 1 cut(s) | 108 |
| BstDEI | CTNAG | 1 cut(s) | 195 |
| BstF5I | GGATG | 1 cut(s) | 232 |
| BstHHI | GCGC | 1 cut(s) | 126 |
| BstKTI | GATC | 1 cut(s) | 176 |
| BstMBI | GATC | 1 cut(s) | 173 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 107, 112, 121 |
| BtsCI | GGATG | 1 cut(s) | 232 |
| BtsI | GCAGTG | 1 cut(s) | 219 |
| BtsIMutI | CAGTG | 2 cut(s) | 190, 219 |
| Cac8I | GCNNGC | 1 cut(s) | 108 |
| CaiI | CAGNNNCTG | 1 cut(s) | 31 |
| CfoI | GCGC | 1 cut(s) | 126 |
| CseI | GACGC | 1 cut(s) | 112 |
| Csp6I | GTAC | 1 cut(s) | 308 |
| CviJI | RGCY | 6 cut(s) | 9, 42, 115, 165, 209, 299 |
| CviKI_1 | RGCY | 6 cut(s) | 9, 42, 115, 165, 209, 299 |
| CviQI | GTAC | 1 cut(s) | 308 |
| DdeI | CTNAG | 1 cut(s) | 195 |
| DpnI | GATC | 1 cut(s) | 175 |
| DpnII | GATC | 1 cut(s) | 173 |
| Eam1104I | CTCTTC | 1 cut(s) | 287 |
| EarI | CTCTTC | 1 cut(s) | 287 |
| Ecl136II | GAGCTC | 2 cut(s) | 42, 299 |
| Eco24I | GRGCYC | 2 cut(s) | 44, 301 |
| Eco53kI | GAGCTC | 2 cut(s) | 42, 299 |
| EcoICRI | GAGCTC | 2 cut(s) | 42, 299 |
| EcoT38I | GRGCYC | 2 cut(s) | 44, 301 |
| FaiI | YATR | 1 cut(s) | 84 |
| FaqI | GGGAC | 1 cut(s) | 13 |
| FauI | CCCGC | 1 cut(s) | 143 |
| FokI | GGATG | 1 cut(s) | 239 |
| FriOI | GRGCYC | 2 cut(s) | 44, 301 |
| GlaI | GCGC | 1 cut(s) | 125 |
| GsaI | CCCAGC | 1 cut(s) | 165 |
| HapII | CCGG | 1 cut(s) | 346 |
| HgaI | GACGC | 1 cut(s) | 112 |
| HhaI | GCGC | 1 cut(s) | 126 |
| Hin6I | GCGC | 1 cut(s) | 124 |
| HinP1I | GCGC | 1 cut(s) | 124 |
| HpaII | CCGG | 1 cut(s) | 346 |
| HphI | GGTGA | 1 cut(s) | 293 |
| Hpy188I | TCNGA | 2 cut(s) | 68, 255 |
| Hpy99I | CGWCG | 1 cut(s) | 106 |
| HpyAV | CCTTC | 1 cut(s) | 68 |
| HpyCH4III | ACNGT | 1 cut(s) | 27 |
| HpyCH4V | TGCA | 1 cut(s) | 343 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 107, 112, 121 |
| HpyF3I | CTNAG | 1 cut(s) | 195 |
| HspAI | GCGC | 1 cut(s) | 124 |
| Kzo9I | GATC | 1 cut(s) | 173 |
| LmnI | GCTCC | 1 cut(s) | 39 |
| LpnPI | CCDG | 4 cut(s) | 44, 175, 225, 359 |
| LweI | GCATC | 1 cut(s) | 330 |
| MaeIII | GTNAC | 1 cut(s) | 217 |
| MalI | GATC | 1 cut(s) | 175 |
| MboI | GATC | 1 cut(s) | 173 |
| MboII | GAAGA | 4 cut(s) | 164, 167, 304, 361 |
| MhlI | GDGCHC | 2 cut(s) | 44, 301 |
| MluCI | AATT | 1 cut(s) | 20 |
| MmeI | TCCRAC | 1 cut(s) | 17 |
| MnlI | CCTC | 2 cut(s) | 58, 276 |
| MseI | TTAA | 1 cut(s) | 120 |
| MspI | CCGG | 1 cut(s) | 346 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 107, 112, 121 |
| NdeII | GATC | 1 cut(s) | 173 |
| NmuCI | GTSAC | 1 cut(s) | 217 |
| Psp124BI | GAGCTC | 2 cut(s) | 44, 301 |
| PspFI | CCCAGC | 1 cut(s) | 161 |
| PstNI | CAGNNNCTG | 1 cut(s) | 31 |
| RsaI | GTAC | 1 cut(s) | 309 |
| RsaNI | GTAC | 1 cut(s) | 308 |
| SacI | GAGCTC | 2 cut(s) | 44, 301 |
| SaqAI | TTAA | 1 cut(s) | 120 |
| Sau3AI | GATC | 1 cut(s) | 173 |
| SduI | GDGCHC | 2 cut(s) | 44, 301 |
| SetI | ASST | 7 cut(s) | 44, 50, 167, 287, 301, 306, 338 |
| SfaNI | GCATC | 1 cut(s) | 330 |
| Sse9I | AATT | 1 cut(s) | 20 |
| SsiI | CCGC | 2 cut(s) | 136, 224 |
| SstI | GAGCTC | 2 cut(s) | 44, 301 |
| TaaI | ACNGT | 1 cut(s) | 27 |
| TasI | AATT | 1 cut(s) | 20 |
| TatI | WGTACW | 1 cut(s) | 307 |
| Tru1I | TTAA | 1 cut(s) | 120 |
| Tru9I | TTAA | 1 cut(s) | 120 |
| TscAI | CASTG | 2 cut(s) | 190, 226 |
| TseFI | GTSAC | 1 cut(s) | 217 |
| Tsp45I | GTSAC | 1 cut(s) | 217 |
| TspDTI | ATGAA | 3 cut(s) | 50, 71, 243 |
| TspRI | CASTG | 2 cut(s) | 190, 226 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 274 |