Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0007077

Physical Location & Seq

Genomic Coordinates Forward (+)

12958303 .. 12960247

Gene Structure 1945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0157400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGCCTAATCTACCTTTGCCTCGCTTCTTCCCTATATTAGGTCCTTATTATTGGCATGCCATGGAGCTCATGAAGTACTCTACCTTCATCACCCTCTTTCTTCTCTTCCTGGTTACCACACCTTACTTTGCAAGAGGTGGAGAAAGATCAGAGATGGTGGATAGTACTATTGAGGTTTATGAAATCGATTACAGAGGTCCAGAGACTCACTCATCAATTCCCCCGCCTGGTCACTTACATGGGAAGAAGAAGCCTTTGCCTAATGTGATCCACAAAGAAAGCGTCATTGGGAGTCCCAAATCTAAGAGGTTCAGGGGTGGCAATTATAACATGGGAAGAAAGGCGAAGACAATAAATGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

120

Amino Acids

13.71

Weight (kDa)

9.77

Isoelectric Point (pI)

43.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06400
fragaria_vesca	FvH4_6g20810 FvH4_6g20810 FvH4_6g20810
malus_domestica	MD12G1044100.v1.1
prunus_persica	Prupe.7G091000_v2.0.a1
pyrus_communis	pycom12g03800
rosa_chinensis	RchiOBHm_Chr3g0476881
rosa_laevigata	RLG00000023746
rosa_multiflora	Rmu_sc0000288.1_g000033
rosa_roxburghii	Rroxscaffold_6G00403680 Rroxscaffold_6G00404930
rosa_rugosa	Rorug03G0157400
rosa_samantha	Rh3AG207600 Rh3AG229900 Rh3BG240200 Rh3BG241300 Rh3CG233900 Rh3CG235000 Rh3CG235700 Rh3CG259900 Rh3DG233900
rosa_wichuraiana	Rw0G011140 Rw3G018900 Rw3G020670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	327
AciI	CCGC	1 cut(s)	224
AclWI	GGATC	1 cut(s)	262
AfaI	GTAC	2 cut(s)	77, 166
AfiI	CCNNNNNNNGG	2 cut(s)	38, 227
AjnI	CCWGG	2 cut(s)	108, 226
AjuI	GAANNNNNNNTTGG	2 cut(s)	270, 302
AluBI	AGCT	1 cut(s)	67
AluI	AGCT	1 cut(s)	67
Alw21I	GWGCWC	1 cut(s)	69
Alw26I	GTCTC	1 cut(s)	197
AlwI	GGATC	1 cut(s)	262
ArsI	GACNNNNNNTTYG	2 cut(s)	267, 299
AspS9I	GGNCC	2 cut(s)	41, 197
AsuHPI	GGTGA	1 cut(s)	82
AvaII	GGWCC	2 cut(s)	41, 197
BanII	GRGCYC	1 cut(s)	69
BarI	GAAGNNNNNNTAC	2 cut(s)	68, 100
BbsI	GAAGAC	1 cut(s)	353
Bbv12I	GWGCWC	1 cut(s)	69
BccI	CCATC	1 cut(s)	148
BciT130I	CCWGG	2 cut(s)	110, 228
BcoDI	GTCTC	1 cut(s)	197
BmcAI	AGTACT	2 cut(s)	77, 166
Bme1390I	CCNGG	2 cut(s)	110, 228
Bme18I	GGWCC	2 cut(s)	41, 197
BmgT120I	GGNCC	2 cut(s)	41, 197
BmrFI	CCNGG	2 cut(s)	110, 228
BpiI	GAAGAC	1 cut(s)	353
BplI	GAGNNNNNCTC	2 cut(s)	194, 226
Bsa29I	ATCGAT	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 227
BseBI	CCWGG	2 cut(s)	110, 228
BseCI	ATCGAT	1 cut(s)	186
BseDI	CCNNGG	1 cut(s)	60
BseLI	CCNNNNNNNGG	2 cut(s)	38, 227
BshVI	ATCGAT	1 cut(s)	186
BsiHKAI	GWGCWC	1 cut(s)	69
BslFI	GGGAC	1 cut(s)	279
BslI	CCNNNNNNNGG	2 cut(s)	38, 227
BsmAI	GTCTC	1 cut(s)	197
BsmFI	GGGAC	1 cut(s)	279
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp143I	GATC	2 cut(s)	146, 267
Bsp19I	CCATGG	1 cut(s)	60
BspACI	CCGC	1 cut(s)	224
BspDI	ATCGAT	1 cut(s)	186
BspHI	TCATGA	1 cut(s)	69
BspPI	GGATC	1 cut(s)	262
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	2 cut(s)	146, 267
BssT1I	CCWWGG	1 cut(s)	60
Bst2UI	CCWGG	2 cut(s)	110, 228
Bst6I	CTCTTC	1 cut(s)	110
BstC8I	GCNNGC	1 cut(s)	57
BstDEI	CTNAG	1 cut(s)	303
BstDSI	CCRYGG	1 cut(s)	60
BstEII	GGTNACC	1 cut(s)	112
BstENI	CCTNNNNNAGG	1 cut(s)	36
BstKTI	GATC	2 cut(s)	149, 270
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	2 cut(s)	146, 267
BstNI	CCWGG	2 cut(s)	110, 228
BstNSI	RCATGY	1 cut(s)	59
BstPI	GGTNACC	1 cut(s)	112
BstSCI	CCNGG	2 cut(s)	108, 226
BstV2I	GAAGAC	1 cut(s)	353
Bsu15I	ATCGAT	1 cut(s)	186
BsuTUI	ATCGAT	1 cut(s)	186
BtgI	CCRYGG	1 cut(s)	60
Cac8I	GCNNGC	1 cut(s)	57
CciI	TCATGA	1 cut(s)	69
Cfr13I	GGNCC	2 cut(s)	41, 197
ClaI	ATCGAT	1 cut(s)	186
CseI	GACGC	1 cut(s)	271
Csp6I	GTAC	2 cut(s)	76, 165
CviAII	CATG	5 cut(s)	56, 61, 70, 239, 331
CviJI	RGCY	2 cut(s)	67, 253
CviKI_1	RGCY	2 cut(s)	67, 253
CviQI	GTAC	2 cut(s)	76, 165
DdeI	CTNAG	1 cut(s)	303
DpnI	GATC	2 cut(s)	148, 269
DpnII	GATC	2 cut(s)	146, 267
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
Ecl136II	GAGCTC	1 cut(s)	67
Eco130I	CCWWGG	1 cut(s)	60
Eco24I	GRGCYC	1 cut(s)	69
Eco47I	GGWCC	2 cut(s)	41, 197
Eco53kI	GAGCTC	1 cut(s)	67
Eco91I	GGTNACC	1 cut(s)	112
EcoICRI	GAGCTC	1 cut(s)	67
EcoNI	CCTNNNNNAGG	1 cut(s)	36
EcoO109I	RGGNCCY	1 cut(s)	41
EcoO65I	GGTNACC	1 cut(s)	112
EcoRII	CCWGG	2 cut(s)	108, 226
EcoT14I	CCWWGG	1 cut(s)	60
EcoT38I	GRGCYC	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	60
FaeI	CATG	5 cut(s)	59, 64, 73, 242, 334
FaiI	YATR	8 cut(s)	35, 57, 62, 71, 180, 240, 327, 332
FaqI	GGGAC	1 cut(s)	279
FatI	CATG	5 cut(s)	55, 60, 69, 238, 330
FauI	CCCGC	1 cut(s)	231
FriOI	GRGCYC	1 cut(s)	69
HgaI	GACGC	1 cut(s)	271
Hin1II	CATG	5 cut(s)	59, 64, 73, 242, 334
HinfI	GANTC	2 cut(s)	205, 292
HphI	GGTGA	1 cut(s)	82
Hpy188I	TCNGA	1 cut(s)	151
Hpy188III	TCNNGA	2 cut(s)	70, 200
HpyAV	CCTTC	1 cut(s)	94
HpyCH4V	TGCA	1 cut(s)	131
HpyF3I	CTNAG	1 cut(s)	303
Hsp92II	CATG	5 cut(s)	59, 64, 73, 242, 334
Kzo9I	GATC	2 cut(s)	146, 267
LmnI	GCTCC	1 cut(s)	64
LpnPI	CCDG	6 cut(s)	95, 122, 213, 213, 240, 298
MaeIII	GTNAC	2 cut(s)	112, 230
MalI	GATC	2 cut(s)	148, 269
MboI	GATC	2 cut(s)	146, 267
MboII	GAAGA	7 cut(s)	19, 92, 97, 256, 259, 348, 358
MhlI	GDGCHC	1 cut(s)	69
MluCI	AATT	2 cut(s)	216, 322
MlyI	GAGTC	2 cut(s)	199, 301
MnlI	CCTC	6 cut(s)	30, 104, 128, 166, 188, 300
MslI	CAYNNNNRTG	1 cut(s)	237
MspR9I	CCNGG	2 cut(s)	110, 228
MvaI	CCWGG	2 cut(s)	110, 228
NcoI	CCATGG	1 cut(s)	60
NdeII	GATC	2 cut(s)	146, 267
NlaIII	CATG	5 cut(s)	59, 64, 73, 242, 334
NmuCI	GTSAC	1 cut(s)	230
NspI	RCATGY	1 cut(s)	59
PaeI	GCATGC	1 cut(s)	59
PagI	TCATGA	1 cut(s)	69
PleI	GAGTC	2 cut(s)	199, 300
PpsI	GAGTC	2 cut(s)	199, 300
PpuMI	RGGWCCY	1 cut(s)	41
PsiI	TTATAA	1 cut(s)	327
Psp124BI	GAGCTC	1 cut(s)	69
Psp5II	RGGWCCY	1 cut(s)	41
Psp6I	CCWGG	2 cut(s)	108, 226
PspEI	GGTNACC	1 cut(s)	112
PspGI	CCWGG	2 cut(s)	108, 226
PspPI	GGNCC	2 cut(s)	41, 197
PspPPI	RGGWCCY	1 cut(s)	41
RsaI	GTAC	2 cut(s)	77, 166
RsaNI	GTAC	2 cut(s)	76, 165
RseI	CAYNNNNRTG	1 cut(s)	237
SacI	GAGCTC	1 cut(s)	69
Sau3AI	GATC	2 cut(s)	146, 267
Sau96I	GGNCC	2 cut(s)	41, 197
ScaI	AGTACT	2 cut(s)	77, 166
SchI	GAGTC	2 cut(s)	199, 301
ScrFI	CCNGG	2 cut(s)	110, 228
SduI	GDGCHC	1 cut(s)	69
SetI	ASST	9 cut(s)	16, 43, 69, 86, 124, 139, 177, 199, 311
SinI	GGWCC	2 cut(s)	41, 197
SmiMI	CAYNNNNRTG	1 cut(s)	237
SphI	GCATGC	1 cut(s)	59
Sse9I	AATT	2 cut(s)	216, 322
SsiI	CCGC	1 cut(s)	224
SstI	GAGCTC	1 cut(s)	69
StyD4I	CCNGG	2 cut(s)	108, 226
StyI	CCWWGG	1 cut(s)	60
TaqI	TCGA	1 cut(s)	186
TasI	AATT	2 cut(s)	216, 322
TatI	WGTACW	2 cut(s)	75, 164
TseFI	GTSAC	1 cut(s)	230
Tsp45I	GTSAC	1 cut(s)	230
TspDTI	ATGAA	3 cut(s)	76, 86, 195
VpaK11BI	GGWCC	2 cut(s)	41, 197
XagI	CCTNNNNNAGG	1 cut(s)	36
XceI	RCATGY	1 cut(s)	59
ZrmI	AGTACT	2 cut(s)	77, 166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.