pentatricopeptide repeat-containing protein At5g06400
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G06400 |
| fragaria_vesca | FvH4_6g20810 FvH4_6g20810 FvH4_6g20810 |
| malus_domestica | MD12G1044100.v1.1 |
| prunus_persica | Prupe.7G091000_v2.0.a1 |
| pyrus_communis | pycom12g03800 |
| rosa_chinensis | RchiOBHm_Chr3g0476881 |
| rosa_laevigata | RLG00000023746 |
| rosa_multiflora | Rmu_sc0000288.1_g000033 |
| rosa_roxburghii | Rroxscaffold_6G00403680 Rroxscaffold_6G00404930 |
| rosa_rugosa | Rorug03G0157400 |
| rosa_samantha | Rh3AG207600 Rh3AG229900 Rh3BG240200 Rh3BG241300 Rh3CG233900 Rh3CG235000 Rh3CG235700 Rh3CG259900 Rh3DG233900 |
| rosa_wichuraiana | Rw0G011140 Rw3G018900 Rw3G020670 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 117 |
| AccBSI | CCGCTC | 1 cut(s) | 140 |
| AciI | CCGC | 2 cut(s) | 4, 140 |
| AclWI | GGATC | 4 cut(s) | 182, 206, 219, 372 |
| AcsI | RAATTY | 4 cut(s) | 223, 258, 267, 484 |
| AfaI | GTAC | 1 cut(s) | 51 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 134 |
| AgsI | TTSAA | 5 cut(s) | 40, 89, 282, 361, 490 |
| AjiI | CACGTC | 1 cut(s) | 476 |
| AjnI | CCWGG | 1 cut(s) | 337 |
| AluBI | AGCT | 1 cut(s) | 355 |
| AluI | AGCT | 1 cut(s) | 355 |
| Alw26I | GTCTC | 1 cut(s) | 593 |
| AlwI | GGATC | 4 cut(s) | 182, 206, 219, 372 |
| ApoI | RAATTY | 4 cut(s) | 223, 258, 267, 484 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 485, 506 |
| BamHI | GGATCC | 1 cut(s) | 211 |
| BccI | CCATC | 4 cut(s) | 70, 128, 202, 427 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 560, 594 |
| BciT130I | CCWGG | 1 cut(s) | 339 |
| BcoDI | GTCTC | 1 cut(s) | 593 |
| BfaI | CTAG | 1 cut(s) | 162 |
| Bme1390I | CCNGG | 1 cut(s) | 339 |
| BmgBI | CACGTC | 1 cut(s) | 476 |
| BmiI | GGNNCC | 2 cut(s) | 213, 503 |
| BmrFI | CCNGG | 1 cut(s) | 339 |
| BmsI | GCATC | 5 cut(s) | 17, 93, 145, 167, 220 |
| BpmI | CTGGAG | 1 cut(s) | 321 |
| BsaI | GGTCTC | 1 cut(s) | 593 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 514, 544 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 134 |
| Bse1I | ACTGG | 2 cut(s) | 293, 607 |
| BseBI | CCWGG | 1 cut(s) | 339 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 134 |
| BseNI | ACTGG | 2 cut(s) | 293, 607 |
| BseRI | GAGGAG | 1 cut(s) | 535 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 134 |
| BsmAI | GTCTC | 1 cut(s) | 593 |
| Bso31I | GGTCTC | 1 cut(s) | 593 |
| Bsp143I | GATC | 3 cut(s) | 174, 211, 364 |
| BspACI | CCGC | 2 cut(s) | 4, 140 |
| BspHI | TCATGA | 1 cut(s) | 130 |
| BspLI | GGNNCC | 2 cut(s) | 213, 503 |
| BspPI | GGATC | 4 cut(s) | 182, 206, 219, 372 |
| BspTNI | GGTCTC | 1 cut(s) | 593 |
| BsrBI | CCGCTC | 1 cut(s) | 140 |
| BsrI | ACTGG | 2 cut(s) | 293, 607 |
| BssMI | GATC | 3 cut(s) | 174, 211, 364 |
| Bst2UI | CCWGG | 1 cut(s) | 339 |
| Bst4CI | ACNGT | 4 cut(s) | 184, 371, 396, 530 |
| Bst6I | CTCTTC | 1 cut(s) | 283 |
| BstC8I | GCNNGC | 1 cut(s) | 6 |
| BstKTI | GATC | 3 cut(s) | 177, 214, 367 |
| BstMAI | GTCTC | 1 cut(s) | 593 |
| BstMBI | GATC | 3 cut(s) | 174, 211, 364 |
| BstNI | CCWGG | 1 cut(s) | 339 |
| BstSCI | CCNGG | 1 cut(s) | 337 |
| BstX2I | RGATCY | 1 cut(s) | 211 |
| BstYI | RGATCY | 1 cut(s) | 211 |
| BtrI | CACGTC | 1 cut(s) | 476 |
| BtsIMutI | CAGTG | 2 cut(s) | 189, 376 |
| Cac8I | GCNNGC | 1 cut(s) | 6 |
| CciI | TCATGA | 1 cut(s) | 130 |
| Csp6I | GTAC | 1 cut(s) | 50 |
| CviAII | CATG | 7 cut(s) | 131, 377, 405, 454, 496, 512, 552 |
| CviJI | RGCY | 5 cut(s) | 84, 127, 355, 418, 458 |
| CviKI_1 | RGCY | 5 cut(s) | 84, 127, 355, 418, 458 |
| CviQI | GTAC | 1 cut(s) | 50 |
| DpnI | GATC | 3 cut(s) | 176, 213, 366 |
| DpnII | GATC | 3 cut(s) | 174, 211, 364 |
| Eam1104I | CTCTTC | 1 cut(s) | 283 |
| EarI | CTCTTC | 1 cut(s) | 283 |
| Eco31I | GGTCTC | 1 cut(s) | 593 |
| EcoRI | GAATTC | 1 cut(s) | 223 |
| EcoRII | CCWGG | 1 cut(s) | 337 |
| EcoT22I | ATGCAT | 1 cut(s) | 160 |
| FaeI | CATG | 7 cut(s) | 134, 380, 408, 457, 499, 515, 555 |
| FatI | CATG | 7 cut(s) | 130, 376, 404, 453, 495, 511, 551 |
| FauNDI | CATATG | 1 cut(s) | 57 |
| FspBI | CTAG | 1 cut(s) | 162 |
| GsuI | CTGGAG | 1 cut(s) | 321 |
| Hin1II | CATG | 7 cut(s) | 134, 380, 408, 457, 499, 515, 555 |
| HindIII | AAGCTT | 1 cut(s) | 353 |
| HinfI | GANTC | 1 cut(s) | 342 |
| Hpy188I | TCNGA | 1 cut(s) | 229 |
| Hpy188III | TCNNGA | 2 cut(s) | 131, 302 |
| HpyAV | CCTTC | 1 cut(s) | 355 |
| HpyCH4III | ACNGT | 4 cut(s) | 184, 371, 396, 530 |
| HpyCH4IV | ACGT | 1 cut(s) | 475 |
| HpyCH4V | TGCA | 6 cut(s) | 21, 106, 158, 253, 470, 571 |
| HpySE526I | ACGT | 1 cut(s) | 475 |
| Hsp92II | CATG | 7 cut(s) | 134, 380, 408, 457, 499, 515, 555 |
| Kzo9I | GATC | 3 cut(s) | 174, 211, 364 |
| LmnI | GCTCC | 1 cut(s) | 137 |
| LpnPI | CCDG | 7 cut(s) | 274, 287, 324, 351, 408, 456, 570 |
| LweI | GCATC | 5 cut(s) | 17, 93, 145, 167, 220 |
| MaeI | CTAG | 1 cut(s) | 162 |
| MaeII | ACGT | 1 cut(s) | 475 |
| MalI | GATC | 3 cut(s) | 176, 213, 366 |
| MbiI | CCGCTC | 1 cut(s) | 140 |
| MboI | GATC | 3 cut(s) | 174, 211, 364 |
| MboII | GAAGA | 3 cut(s) | 217, 270, 317 |
| MfeI | CAATTG | 1 cut(s) | 40 |
| MflI | RGATCY | 1 cut(s) | 211 |
| MluCI | AATT | 8 cut(s) | 40, 118, 223, 258, 267, 297, 465, 484 |
| MmeI | TCCRAC | 1 cut(s) | 168 |
| MnlI | CCTC | 5 cut(s) | 138, 165, 286, 492, 513 |
| Mph1103I | ATGCAT | 1 cut(s) | 160 |
| MroXI | GAANNNNTTC | 2 cut(s) | 485, 506 |
| MseI | TTAA | 2 cut(s) | 24, 296 |
| MspR9I | CCNGG | 1 cut(s) | 339 |
| MunI | CAATTG | 1 cut(s) | 40 |
| MvaI | CCWGG | 1 cut(s) | 339 |
| NdeI | CATATG | 1 cut(s) | 57 |
| NdeII | GATC | 3 cut(s) | 174, 211, 364 |
| NlaIII | CATG | 7 cut(s) | 134, 380, 408, 457, 499, 515, 555 |
| NlaIV | GGNNCC | 2 cut(s) | 213, 503 |
| NsiI | ATGCAT | 1 cut(s) | 160 |
| PagI | TCATGA | 1 cut(s) | 130 |
| PdmI | GAANNNNTTC | 2 cut(s) | 485, 506 |
| PfeI | GAWTC | 1 cut(s) | 342 |
| PfoI | TCCNGGA | 1 cut(s) | 337 |
| PsiI | TTATAA | 1 cut(s) | 117 |
| Psp6I | CCWGG | 1 cut(s) | 337 |
| PspGI | CCWGG | 1 cut(s) | 337 |
| PspN4I | GGNNCC | 2 cut(s) | 213, 503 |
| PsuI | RGATCY | 1 cut(s) | 211 |
| RsaI | GTAC | 1 cut(s) | 51 |
| RsaNI | GTAC | 1 cut(s) | 50 |
| SaqAI | TTAA | 2 cut(s) | 24, 296 |
| Sau3AI | GATC | 3 cut(s) | 174, 211, 364 |
| ScrFI | CCNGG | 1 cut(s) | 339 |
| SetI | ASST | 4 cut(s) | 357, 478, 507, 589 |
| SfaNI | GCATC | 5 cut(s) | 17, 93, 145, 167, 220 |
| Sse9I | AATT | 8 cut(s) | 40, 118, 223, 258, 267, 297, 465, 484 |
| SsiI | CCGC | 2 cut(s) | 4, 140 |
| SspMI | CTAG | 1 cut(s) | 162 |
| StyD4I | CCNGG | 1 cut(s) | 337 |
| TaaI | ACNGT | 4 cut(s) | 184, 371, 396, 530 |
| TaiI | ACGT | 1 cut(s) | 478 |
| TaqI | TCGA | 2 cut(s) | 221, 580 |
| TasI | AATT | 8 cut(s) | 40, 118, 223, 258, 267, 297, 465, 484 |
| TatI | WGTACW | 1 cut(s) | 49 |
| TfiI | GAWTC | 1 cut(s) | 342 |
| Tru1I | TTAA | 2 cut(s) | 24, 296 |
| Tru9I | TTAA | 2 cut(s) | 24, 296 |
| TscAI | CASTG | 2 cut(s) | 189, 376 |
| TspDTI | ATGAA | 2 cut(s) | 44, 528 |
| TspRI | CASTG | 2 cut(s) | 189, 376 |
| XapI | RAATTY | 4 cut(s) | 223, 258, 267, 484 |
| XmnI | GAANNNNTTC | 2 cut(s) | 485, 506 |
| XspI | CTAG | 1 cut(s) | 162 |
| Zsp2I | ATGCAT | 1 cut(s) | 160 |