pentatricopeptide repeat-containing protein At5g06400
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G06400 |
| fragaria_vesca | FvH4_6g20810 FvH4_6g20810 FvH4_6g20810 |
| malus_domestica | MD12G1044100.v1.1 |
| prunus_persica | Prupe.7G091000_v2.0.a1 |
| pyrus_communis | pycom12g03800 |
| rosa_chinensis | RchiOBHm_Chr3g0476881 |
| rosa_laevigata | RLG00000023746 |
| rosa_multiflora | Rmu_sc0000288.1_g000033 |
| rosa_roxburghii | Rroxscaffold_6G00403680 Rroxscaffold_6G00404930 |
| rosa_rugosa | Rorug03G0157400 |
| rosa_samantha | Rh3AG207600 Rh3AG229900 Rh3BG240200 Rh3BG241300 Rh3CG233900 Rh3CG235000 Rh3CG235700 Rh3CG259900 Rh3DG233900 |
| rosa_wichuraiana | Rw0G011140 Rw3G018900 Rw3G020670 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 445 |
| AciI | CCGC | 6 cut(s) | 15, 224, 309, 416, 445, 518 |
| AclWI | GGATC | 1 cut(s) | 181 |
| AcsI | RAATTY | 1 cut(s) | 77 |
| AcuI | CTGAAG | 1 cut(s) | 518 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 36, 270, 271 |
| AgsI | TTSAA | 1 cut(s) | 142 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 252, 284 |
| AluBI | AGCT | 4 cut(s) | 42, 165, 365, 553 |
| AluI | AGCT | 4 cut(s) | 42, 165, 365, 553 |
| Alw21I | GWGCWC | 1 cut(s) | 44 |
| AlwI | GGATC | 1 cut(s) | 181 |
| Ama87I | CYCGRG | 1 cut(s) | 329 |
| ApoI | RAATTY | 1 cut(s) | 77 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 264 |
| AsuHPI | GGTGA | 2 cut(s) | 290, 559 |
| AvaI | CYCGRG | 1 cut(s) | 329 |
| BanII | GRGCYC | 1 cut(s) | 44 |
| Bbv12I | GWGCWC | 1 cut(s) | 44 |
| BccI | CCATC | 3 cut(s) | 124, 244, 430 |
| BisI | GCNGC | 1 cut(s) | 518 |
| BlsI | GCNGC | 1 cut(s) | 519 |
| BmeT110I | CYCGRG | 1 cut(s) | 329 |
| BmrI | ACTGGG | 2 cut(s) | 204, 377 |
| BmuI | ACTGGG | 2 cut(s) | 204, 377 |
| BsaJI | CCNNGG | 2 cut(s) | 255, 330 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 431, 461 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 36, 270, 271 |
| Bse1I | ACTGG | 3 cut(s) | 199, 348, 383 |
| BseDI | CCNNGG | 2 cut(s) | 255, 330 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 36, 270, 271 |
| BseNI | ACTGG | 3 cut(s) | 199, 348, 383 |
| BseRI | GAGGAG | 1 cut(s) | 455 |
| BseYI | CCCAGC | 1 cut(s) | 161 |
| BsiHKAI | GWGCWC | 1 cut(s) | 44 |
| BsiHKCI | CYCGRG | 1 cut(s) | 329 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 36, 270, 271 |
| BsoBI | CYCGRG | 1 cut(s) | 329 |
| Bsp1286I | GDGCHC | 1 cut(s) | 44 |
| Bsp143I | GATC | 1 cut(s) | 173 |
| BspACI | CCGC | 6 cut(s) | 15, 224, 309, 416, 445, 518 |
| BspHI | TCATGA | 1 cut(s) | 391 |
| BspPI | GGATC | 1 cut(s) | 181 |
| BsrBI | CCGCTC | 1 cut(s) | 445 |
| BsrI | ACTGG | 3 cut(s) | 199, 348, 383 |
| BssECI | CCNNGG | 2 cut(s) | 255, 330 |
| BssMI | GATC | 1 cut(s) | 173 |
| BssT1I | CCWWGG | 1 cut(s) | 255 |
| Bst4CI | ACNGT | 1 cut(s) | 27 |
| Bst6I | CTCTTC | 2 cut(s) | 285, 494 |
| BstDEI | CTNAG | 3 cut(s) | 111, 120, 579 |
| BstKTI | GATC | 1 cut(s) | 176 |
| BstMBI | GATC | 1 cut(s) | 173 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 112, 121 |
| BtsI | GCAGTG | 1 cut(s) | 219 |
| BtsIMutI | CAGTG | 3 cut(s) | 190, 219, 341 |
| CciI | TCATGA | 1 cut(s) | 391 |
| CseI | GACGC | 2 cut(s) | 112, 347 |
| CviAII | CATG | 1 cut(s) | 392 |
| DdeI | CTNAG | 3 cut(s) | 111, 120, 579 |
| DpnI | GATC | 1 cut(s) | 175 |
| DpnII | GATC | 1 cut(s) | 173 |
| DraI | TTTAAA | 1 cut(s) | 511 |
| Eam1104I | CTCTTC | 2 cut(s) | 285, 494 |
| EarI | CTCTTC | 2 cut(s) | 285, 494 |
| EciI | GGCGGA | 2 cut(s) | 4, 431 |
| Ecl136II | GAGCTC | 1 cut(s) | 42 |
| Eco130I | CCWWGG | 1 cut(s) | 255 |
| Eco24I | GRGCYC | 1 cut(s) | 44 |
| Eco53kI | GAGCTC | 1 cut(s) | 42 |
| Eco57I | CTGAAG | 1 cut(s) | 518 |
| Eco88I | CYCGRG | 1 cut(s) | 329 |
| EcoICRI | GAGCTC | 1 cut(s) | 42 |
| EcoT14I | CCWWGG | 1 cut(s) | 255 |
| EcoT38I | GRGCYC | 1 cut(s) | 44 |
| ErhI | CCWWGG | 1 cut(s) | 255 |
| FaeI | CATG | 1 cut(s) | 395 |
| FaiI | YATR | 3 cut(s) | 84, 393, 586 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 491, 523 |
| FatI | CATG | 1 cut(s) | 391 |
| Fnu4HI | GCNGC | 1 cut(s) | 518 |
| FriOI | GRGCYC | 1 cut(s) | 44 |
| Fsp4HI | GCNGC | 1 cut(s) | 518 |
| GluI | GCNGC | 1 cut(s) | 518 |
| GsaI | CCCAGC | 1 cut(s) | 165 |
| HgaI | GACGC | 2 cut(s) | 112, 347 |
| Hin1II | CATG | 1 cut(s) | 395 |
| HincII | GTYRAC | 2 cut(s) | 337, 487 |
| HindII | GTYRAC | 2 cut(s) | 337, 487 |
| HinfI | GANTC | 1 cut(s) | 473 |
| HphI | GGTGA | 2 cut(s) | 290, 559 |
| Hpy166II | GTNNAC | 2 cut(s) | 337, 487 |
| Hpy188I | TCNGA | 3 cut(s) | 68, 478, 498 |
| Hpy188III | TCNNGA | 2 cut(s) | 329, 392 |
| Hpy8I | GTNNAC | 2 cut(s) | 337, 487 |
| Hpy99I | CGWCG | 1 cut(s) | 106 |
| HpyAV | CCTTC | 3 cut(s) | 68, 275, 554 |
| HpyCH4III | ACNGT | 1 cut(s) | 27 |
| HpyCH4V | TGCA | 1 cut(s) | 306 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 112, 121 |
| HpyF3I | CTNAG | 3 cut(s) | 111, 120, 579 |
| Hsp92II | CATG | 1 cut(s) | 395 |
| Kzo9I | GATC | 1 cut(s) | 173 |
| LmnI | GCTCC | 2 cut(s) | 39, 442 |
| LpnPI | CCDG | 6 cut(s) | 175, 180, 225, 329, 396, 397 |
| MaeIII | GTNAC | 2 cut(s) | 217, 397 |
| MalI | GATC | 1 cut(s) | 175 |
| MbiI | CCGCTC | 1 cut(s) | 445 |
| MboI | GATC | 1 cut(s) | 173 |
| MboII | GAAGA | 6 cut(s) | 167, 302, 359, 368, 415, 511 |
| MhlI | GDGCHC | 1 cut(s) | 44 |
| MluCI | AATT | 2 cut(s) | 20, 77 |
| MmeI | TCCRAC | 1 cut(s) | 17 |
| MnlI | CCTC | 7 cut(s) | 58, 274, 288, 325, 388, 433, 495 |
| MroXI | GAANNNNTTC | 1 cut(s) | 264 |
| MseI | TTAA | 2 cut(s) | 510, 530 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 112, 121 |
| NdeII | GATC | 1 cut(s) | 173 |
| NlaIII | CATG | 1 cut(s) | 395 |
| NmuCI | GTSAC | 1 cut(s) | 217 |
| PagI | TCATGA | 1 cut(s) | 391 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 173 |
| PdmI | GAANNNNTTC | 1 cut(s) | 264 |
| PfeI | GAWTC | 1 cut(s) | 473 |
| PkrI | GCNGC | 1 cut(s) | 519 |
| Psp124BI | GAGCTC | 1 cut(s) | 44 |
| PspFI | CCCAGC | 1 cut(s) | 161 |
| SacI | GAGCTC | 1 cut(s) | 44 |
| SaqAI | TTAA | 2 cut(s) | 510, 530 |
| SatI | GCNGC | 1 cut(s) | 518 |
| Sau3AI | GATC | 1 cut(s) | 173 |
| SduI | GDGCHC | 1 cut(s) | 44 |
| Sse9I | AATT | 2 cut(s) | 20, 77 |
| SsiI | CCGC | 6 cut(s) | 15, 224, 309, 416, 445, 518 |
| SstI | GAGCTC | 1 cut(s) | 44 |
| StyI | CCWWGG | 1 cut(s) | 255 |
| TaaI | ACNGT | 1 cut(s) | 27 |
| TaqI | TCGA | 1 cut(s) | 434 |
| TasI | AATT | 2 cut(s) | 20, 77 |
| TauI | GCSGC | 1 cut(s) | 520 |
| TfiI | GAWTC | 1 cut(s) | 473 |
| Tru1I | TTAA | 2 cut(s) | 510, 530 |
| Tru9I | TTAA | 2 cut(s) | 510, 530 |
| TscAI | CASTG | 3 cut(s) | 190, 226, 348 |
| TseFI | GTSAC | 1 cut(s) | 217 |
| Tsp45I | GTSAC | 1 cut(s) | 217 |
| TspDTI | ATGAA | 3 cut(s) | 50, 71, 380 |
| TspRI | CASTG | 3 cut(s) | 190, 226, 348 |
| XapI | RAATTY | 1 cut(s) | 77 |
| XmnI | GAANNNNTTC | 1 cut(s) | 264 |