pentatricopeptide repeat-containing protein At5g06400
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G06400 |
| fragaria_vesca | FvH4_6g20810 FvH4_6g20810 FvH4_6g20810 |
| malus_domestica | MD12G1044100.v1.1 |
| prunus_persica | Prupe.7G091000_v2.0.a1 |
| pyrus_communis | pycom12g03800 |
| rosa_chinensis | RchiOBHm_Chr3g0476881 |
| rosa_laevigata | RLG00000023746 |
| rosa_multiflora | Rmu_sc0000288.1_g000033 |
| rosa_roxburghii | Rroxscaffold_6G00403680 Rroxscaffold_6G00404930 |
| rosa_rugosa | Rorug03G0157400 |
| rosa_samantha | Rh3AG207600 Rh3AG229900 Rh3BG240200 Rh3BG241300 Rh3CG233900 Rh3CG235000 Rh3CG235700 Rh3CG259900 Rh3DG233900 |
| rosa_wichuraiana | Rw0G011140 Rw3G018900 Rw3G020670 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 85 |
| AclWI | GGATC | 2 cut(s) | 130, 265 |
| AcoI | YGGCCR | 1 cut(s) | 22 |
| AfaI | GTAC | 1 cut(s) | 136 |
| AgsI | TTSAA | 1 cut(s) | 91 |
| AluBI | AGCT | 4 cut(s) | 114, 197, 266, 285 |
| AluI | AGCT | 4 cut(s) | 114, 197, 266, 285 |
| AlwI | GGATC | 2 cut(s) | 130, 265 |
| AoxI | GGCC | 1 cut(s) | 22 |
| AspLEI | GCGC | 1 cut(s) | 75 |
| AsuII | TTCGAA | 1 cut(s) | 233 |
| BccI | CCATC | 4 cut(s) | 14, 23, 73, 248 |
| BfaI | CTAG | 1 cut(s) | 298 |
| BmrI | ACTGGG | 1 cut(s) | 209 |
| BmsI | GCATC | 1 cut(s) | 160 |
| BmuI | ACTGGG | 1 cut(s) | 209 |
| BpmI | CTGGAG | 1 cut(s) | 246 |
| Bpu14I | TTCGAA | 1 cut(s) | 233 |
| BsaWI | WCCGGW | 1 cut(s) | 175 |
| Bse1I | ACTGG | 1 cut(s) | 215 |
| BseGI | GGATG | 1 cut(s) | 25 |
| BseMII | CTCAG | 1 cut(s) | 135 |
| BseNI | ACTGG | 1 cut(s) | 215 |
| BseYI | CCCAGC | 1 cut(s) | 110 |
| BshFI | GGCC | 1 cut(s) | 24 |
| BsiSI | CCGG | 1 cut(s) | 176 |
| BslFI | GGGAC | 1 cut(s) | 18 |
| BsmFI | GGGAC | 1 cut(s) | 18 |
| BsnI | GGCC | 1 cut(s) | 24 |
| Bsp119I | TTCGAA | 1 cut(s) | 233 |
| Bsp143I | GATC | 2 cut(s) | 122, 257 |
| BspACI | CCGC | 1 cut(s) | 85 |
| BspANI | GGCC | 1 cut(s) | 24 |
| BspCNI | CTCAG | 1 cut(s) | 136 |
| BspPI | GGATC | 2 cut(s) | 130, 265 |
| BspT104I | TTCGAA | 1 cut(s) | 233 |
| BsrI | ACTGG | 1 cut(s) | 215 |
| BssMI | GATC | 2 cut(s) | 122, 257 |
| BstBI | TTCGAA | 1 cut(s) | 233 |
| BstC8I | GCNNGC | 2 cut(s) | 57, 85 |
| BstDEI | CTNAG | 2 cut(s) | 69, 144 |
| BstF5I | GGATG | 1 cut(s) | 25 |
| BstHHI | GCGC | 1 cut(s) | 75 |
| BstKTI | GATC | 2 cut(s) | 125, 260 |
| BstMBI | GATC | 2 cut(s) | 122, 257 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 56, 61, 70 |
| BstX2I | RGATCY | 1 cut(s) | 257 |
| BstYI | RGATCY | 1 cut(s) | 257 |
| BsuRI | GGCC | 1 cut(s) | 24 |
| BtsCI | GGATG | 1 cut(s) | 25 |
| Cac8I | GCNNGC | 2 cut(s) | 57, 85 |
| CfoI | GCGC | 1 cut(s) | 75 |
| CseI | GACGC | 1 cut(s) | 61 |
| Csp6I | GTAC | 1 cut(s) | 135 |
| CviAII | CATG | 1 cut(s) | 8 |
| CviJI | RGCY | 9 cut(s) | 24, 64, 83, 114, 158, 197, 213, 266, 285 |
| CviKI_1 | RGCY | 9 cut(s) | 24, 64, 83, 114, 158, 197, 213, 266, 285 |
| CviQI | GTAC | 1 cut(s) | 135 |
| DdeI | CTNAG | 2 cut(s) | 69, 144 |
| DpnI | GATC | 2 cut(s) | 124, 259 |
| DpnII | GATC | 2 cut(s) | 122, 257 |
| EaeI | YGGCCR | 1 cut(s) | 22 |
| FaeI | CATG | 1 cut(s) | 11 |
| FaiI | YATR | 2 cut(s) | 9, 272 |
| FaqI | GGGAC | 1 cut(s) | 18 |
| FatI | CATG | 1 cut(s) | 7 |
| FauI | CCCGC | 1 cut(s) | 92 |
| FokI | GGATG | 1 cut(s) | 32 |
| FspBI | CTAG | 1 cut(s) | 298 |
| GlaI | GCGC | 1 cut(s) | 74 |
| GsaI | CCCAGC | 1 cut(s) | 114 |
| GsuI | CTGGAG | 1 cut(s) | 246 |
| HaeIII | GGCC | 1 cut(s) | 24 |
| HapII | CCGG | 1 cut(s) | 176 |
| HgaI | GACGC | 1 cut(s) | 61 |
| HhaI | GCGC | 1 cut(s) | 75 |
| Hin1II | CATG | 1 cut(s) | 11 |
| Hin6I | GCGC | 1 cut(s) | 73 |
| HinP1I | GCGC | 1 cut(s) | 73 |
| HinfI | GANTC | 1 cut(s) | 11 |
| HpaII | CCGG | 1 cut(s) | 176 |
| Hpy188I | TCNGA | 1 cut(s) | 36 |
| Hpy188III | TCNNGA | 2 cut(s) | 224, 244 |
| Hpy99I | CGWCG | 1 cut(s) | 55 |
| HpyCH4V | TGCA | 1 cut(s) | 173 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 56, 61, 70 |
| HpyF3I | CTNAG | 2 cut(s) | 69, 144 |
| Hsp92II | CATG | 1 cut(s) | 11 |
| HspAI | GCGC | 1 cut(s) | 73 |
| Kzo9I | GATC | 2 cut(s) | 122, 257 |
| LpnPI | CCDG | 5 cut(s) | 124, 189, 228, 229, 276 |
| LweI | GCATC | 1 cut(s) | 160 |
| MaeI | CTAG | 1 cut(s) | 298 |
| MaeIII | GTNAC | 1 cut(s) | 293 |
| MalI | GATC | 2 cut(s) | 124, 259 |
| MboI | GATC | 2 cut(s) | 122, 257 |
| MboII | GAAGA | 5 cut(s) | 116, 191, 200, 247, 263 |
| MflI | RGATCY | 1 cut(s) | 257 |
| MlyI | GAGTC | 1 cut(s) | 5 |
| MnlI | CCTC | 1 cut(s) | 220 |
| MspA1I | CMGCKG | 1 cut(s) | 266 |
| MspI | CCGG | 1 cut(s) | 176 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 56, 61, 70 |
| NdeII | GATC | 2 cut(s) | 122, 257 |
| NlaIII | CATG | 1 cut(s) | 11 |
| NmeAIII | GCCGAG | 1 cut(s) | 50 |
| NspV | TTCGAA | 1 cut(s) | 233 |
| PleI | GAGTC | 1 cut(s) | 5 |
| PpsI | GAGTC | 1 cut(s) | 5 |
| PspFI | CCCAGC | 1 cut(s) | 110 |
| PsuI | RGATCY | 1 cut(s) | 257 |
| PvuII | CAGCTG | 1 cut(s) | 266 |
| RsaI | GTAC | 1 cut(s) | 136 |
| RsaNI | GTAC | 1 cut(s) | 135 |
| Sau3AI | GATC | 2 cut(s) | 122, 257 |
| SchI | GAGTC | 1 cut(s) | 5 |
| SetI | ASST | 5 cut(s) | 116, 199, 231, 268, 287 |
| SfaNI | GCATC | 1 cut(s) | 160 |
| SfuI | TTCGAA | 1 cut(s) | 233 |
| SsiI | CCGC | 1 cut(s) | 85 |
| SspMI | CTAG | 1 cut(s) | 298 |
| TaqI | TCGA | 1 cut(s) | 233 |
| TspGWI | ACGGA | 1 cut(s) | 263 |
| XspI | CTAG | 1 cut(s) | 298 |