Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00481

Orthogroup ID

OG0007077

Physical Location & Seq

Genomic Coordinates Reverse (-)

35422 .. 36822

Gene Structure 1401 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G011140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1401 bp

ATGCAAAGTCTTTATAAATTGCAGCCTCAAGATGGAGAGGTATCAAGCAGTGATTCATCTAGTGGAGAGAGGACCAATACAGTGTTGGAGTTGCTACCAAAGAAGATGGATCCCTTATTGAATTCTGATGCTTATGATGACAAGGATTTGCAAGAAATTTGTAAAATTCTGTCCTCTTCAACTGACTGGTGCTTCATTCAAGAAGTTTTGGAGAAGTCTGCTGTTGATTACACTCCAGGACTCGTTCTGGAAATTTTGAGGTATCACAGTGGGCATGGTTCGGTAGCATTACAGTTTTTCTCGTGGGTAGGAAAGCAATCTGGTTATTGCCACACTACTGATACTTACAACATGGCTATCAAAATTGCAGGGCGTGGGAAAGATTTCAAGCACATGAGGAACCTTTTCTTTGAAATGAGGAGAAACAGTTTCTCAATAACACAAGATACATGGACAATAATGATAATGCAATATGGTCGAACAGGTCTCACAGAGATTGCTCTTCAGTTTTTCAGAGAGATGAAAAGTAATTGCAACCCAACTGGCGGTACCTATAAGTATTTGATCATATCTCTTTGTGGGAGAAAAGGTCGAAGGGTAGATGAAGCAATTAAAATATTCCAGGAGATGATCCGTGCTGCACATATACCTGACAAAGAGTTGGTTGAAACTTACGTTGGTTGTTTATGTGAAGTTGGTAAGCTGTCAGATGCTAGAAGATGTATAGATTATCTTTCCAAAGTTGGTTTTACCACCTCTCTTGGTTGTTCCTTGTACATTAGGGCTCTTTGTCGAGCTGGGAAGTTACAAGAAGCTTCTGCGTTGATGGATGATATTGGGGAAGAGCGATCCACATTGGATCGGTATACTTATGGGAGCTTTGTTCATGGACTTTTGCGGAGTGGACAAGTAGAAGAAGCACTGGCCAAGGTGGAGTCTATGAAGCAGGCTGGCATGAAGCCAACCGTTCATGTTTATACATCCTTAATAGTTCATTTCTTTAAGGAGAAGCAGATCAAAAGGGCATTAGAAATTTTCAATGAAATGCAACAGGAAGGATGTGAACCGACGGTAGTTACTTATTCCACCCTTATCCGAGGGTACATGAACATGGAGATGATTGCTGAAGCTTGGAGTGTCTTTCACAACATGAAACTGAAAGGGCCATTGCCGGATTTCAAAACTTATTCAATGTTCCTTCATTGTCTTTGTAAGGCAGGGAAATCAGAAGAAGCCATGCAGCTTATATCTGAAATGTTGAACAGTGGGATTGTTCCCAGTGTTGTCAATTTTCGAACTGTATTTTACGGACTTAACCGAGAAGGTAAGCAAGATTTGGCTCGCATTGTAATGGAACAGAAGTCATCTTTGATTAGAAAACGTAAGTTCTTAATATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

466

Amino Acids

53.03

Weight (kDa)

8.42

Isoelectric Point (pI)

31.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	150 - 193	1.3e-06	PPR repeat family
PPR	PF01535	150 - 177	8.7e-06	PPR repeat
TPR_24	PF23276	265 - 383	4.9e-08	Fungal tetratrico peptide repeats
PPR_2	PF13041	289 - 330	1.2e-06	PPR repeat family
PPR_long	PF17177	301 - 428	8.6e-11	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	312 - 368	1.8e-13	Pentatricopeptide repeat domain
PPR_2	PF13041	323 - 369	1.6e-15	PPR repeat family
TPR_24	PF23276	324 - 415	5.4e-07	Fungal tetratrico peptide repeats
PPR_1	PF12854	353 - 385	3.1e-07	PPR repeat
PPR_2	PF13041	358 - 405	2.9e-13	PPR repeat family
PPR_1	PF12854	387 - 419	9.9e-08	PPR repeat
PPR_2	PF13041	395 - 438	4e-08	PPR repeat family
PPR	PF01535	395 - 424	3.4e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0007077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06400
fragaria_vesca	FvH4_6g20810 FvH4_6g20810 FvH4_6g20810
malus_domestica	MD12G1044100.v1.1
prunus_persica	Prupe.7G091000_v2.0.a1
pyrus_communis	pycom12g03800
rosa_chinensis	RchiOBHm_Chr3g0476881
rosa_laevigata	RLG00000023746
rosa_multiflora	Rmu_sc0000288.1_g000033
rosa_roxburghii	Rroxscaffold_6G00403680 Rroxscaffold_6G00404930
rosa_rugosa	Rorug03G0157400
rosa_samantha	Rh3AG207600 Rh3AG229900 Rh3BG240200 Rh3BG241300 Rh3CG233900 Rh3CG235000 Rh3CG235700 Rh3CG259900 Rh3DG233900
rosa_wichuraiana	Rw0G011140 Rw3G018900 Rw3G020670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	15
Acc65I	GGTACC	1 cut(s)	548
AccB1I	GGYRCC	1 cut(s)	548
AccI	GTMKAC	1 cut(s)	866
AciI	CCGC	2 cut(s)	546, 898
AclWI	GGATC	5 cut(s)	104, 117, 625, 843, 867
AcoI	YGGCCR	1 cut(s)	924
AcsI	RAATTY	5 cut(s)	121, 156, 165, 252, 1032
AcuI	CTGAAG	2 cut(s)	488, 1146
AfaI	GTAC	3 cut(s)	550, 776, 1103
AfiI	CCNNNNNNNGG	2 cut(s)	32, 545
AjnI	CCWGG	2 cut(s)	235, 621
AjuI	GAANNNNNNNTTGG	2 cut(s)	660, 692
AluBI	AGCT	6 cut(s)	703, 797, 815, 879, 1130, 1243
AluI	AGCT	6 cut(s)	703, 797, 815, 879, 1130, 1243
Alw26I	GTCTC	1 cut(s)	491
AlwI	GGATC	5 cut(s)	104, 117, 625, 843, 867
AoxI	GGCC	2 cut(s)	924, 1163
ApeKI	GCWGC	3 cut(s)	22, 638, 1240
ApoI	RAATTY	5 cut(s)	121, 156, 165, 252, 1032
Asp700I	GAANNNNTTC	2 cut(s)	383, 404
Asp718I	GGTACC	1 cut(s)	548
AspS9I	GGNCC	2 cut(s)	72, 1163
AsuII	TTCGAA	1 cut(s)	1294
AvaII	GGWCC	1 cut(s)	72
BalI	TGGCCA	1 cut(s)	926
BamHI	GGATCC	1 cut(s)	109
BanI	GGYRCC	1 cut(s)	548
BanII	GRGCYC	1 cut(s)	787
BauI	CACGAG	1 cut(s)	301
BbvI	GCAGC	3 cut(s)	34, 625, 1252
BccI	CCATC	3 cut(s)	26, 100, 820
BcgI	CGANNNNNNTGC	2 cut(s)	458, 492
BciT130I	CCWGG	2 cut(s)	237, 623
BclI	TGATCA	1 cut(s)	564
BcoDI	GTCTC	1 cut(s)	491
BfaI	CTAG	2 cut(s)	60, 714
BisI	GCNGC	3 cut(s)	23, 639, 1241
BlsI	GCNGC	3 cut(s)	24, 640, 1242
Bme1390I	CCNGG	2 cut(s)	237, 623
Bme18I	GGWCC	1 cut(s)	72
BmgT120I	GGNCC	2 cut(s)	72, 1163
BmiI	GGNNCC	3 cut(s)	111, 401, 550
BmrFI	CCNGG	2 cut(s)	237, 623
BmrI	ACTGGG	1 cut(s)	1272
BmsI	GCATC	2 cut(s)	118, 700
BmuI	ACTGGG	1 cut(s)	1272
BpmI	CTGGAG	1 cut(s)	219
Bpu14I	TTCGAA	1 cut(s)	1294
BpuEI	CTTGAG	1 cut(s)	12
BsaI	GGTCTC	1 cut(s)	491
BsaJI	CCNNGG	2 cut(s)	927, 1096
BsaXI	ACNNNNNCTCC	4 cut(s)	412, 442, 574, 604
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 545
Bse1I	ACTGG	4 cut(s)	191, 547, 927, 1278
Bse3DI	GCAATG	1 cut(s)	1166
BseBI	CCWGG	2 cut(s)	237, 623
BseDI	CCNNGG	2 cut(s)	927, 1096
BseGI	GGATG	3 cut(s)	835, 980, 1064
BseLI	CCNNNNNNNGG	2 cut(s)	32, 545
BseMI	GCAATG	1 cut(s)	1166
BseNI	ACTGG	4 cut(s)	191, 547, 927, 1278
BseRI	GAGGAG	1 cut(s)	433
BseXI	GCAGC	3 cut(s)	34, 625, 1252
BseYI	CCCAGC	1 cut(s)	797
BsgI	GTGCAG	1 cut(s)	624
BshFI	GGCC	2 cut(s)	926, 1165
BshNI	GGYRCC	1 cut(s)	548
BsiSI	CCGG	1 cut(s)	1172
BslI	CCNNNNNNNGG	2 cut(s)	32, 545
BsmAI	GTCTC	1 cut(s)	491
BsnI	GGCC	2 cut(s)	926, 1165
Bso31I	GGTCTC	1 cut(s)	491
Bsp119I	TTCGAA	1 cut(s)	1294
Bsp1286I	GDGCHC	1 cut(s)	787
Bsp1407I	TGTACA	1 cut(s)	774
Bsp143I	GATC	6 cut(s)	109, 564, 630, 848, 859, 1014
BspACI	CCGC	2 cut(s)	546, 898
BspANI	GGCC	2 cut(s)	926, 1165
BspHI	TCATGA	1 cut(s)	1397
BspLI	GGNNCC	3 cut(s)	111, 401, 550
BspPI	GGATC	5 cut(s)	104, 117, 625, 843, 867
BspQI	GCTCTTC	2 cut(s)	507, 837
BspT104I	TTCGAA	1 cut(s)	1294
BspT107I	GGYRCC	1 cut(s)	548
BspTNI	GGTCTC	1 cut(s)	491
BsrDI	GCAATG	1 cut(s)	1166
BsrGI	TGTACA	1 cut(s)	774
BsrI	ACTGG	4 cut(s)	191, 547, 927, 1278
BssECI	CCNNGG	2 cut(s)	927, 1096
BssMI	GATC	6 cut(s)	109, 564, 630, 848, 859, 1014
BssNAI	GTATAC	1 cut(s)	867
BssSI	CACGAG	1 cut(s)	301
BssT1I	CCWWGG	1 cut(s)	927
Bst1107I	GTATAC	1 cut(s)	867
Bst2BI	CACGAG	1 cut(s)	301
Bst2UI	CCWGG	2 cut(s)	237, 623
Bst4CI	ACNGT	8 cut(s)	82, 269, 294, 428, 967, 1072, 1265, 1300
Bst6I	CTCTTC	3 cut(s)	181, 507, 837
BstAUI	TGTACA	1 cut(s)	774
BstBI	TTCGAA	1 cut(s)	1294
BstC8I	GCNNGC	3 cut(s)	948, 952, 1342
BstF5I	GGATG	3 cut(s)	835, 980, 1064
BstKTI	GATC	6 cut(s)	112, 567, 633, 851, 862, 1017
BstMAI	GTCTC	1 cut(s)	491
BstMBI	GATC	6 cut(s)	109, 564, 630, 848, 859, 1014
BstNI	CCWGG	2 cut(s)	237, 623
BstSCI	CCNGG	2 cut(s)	235, 621
BstV1I	GCAGC	3 cut(s)	34, 625, 1252
BstX2I	RGATCY	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	109
BstZ17I	GTATAC	1 cut(s)	867
BsuRI	GGCC	2 cut(s)	926, 1165
BtsCI	GGATG	3 cut(s)	835, 980, 1064
BtsI	GCAGTG	1 cut(s)	55
BtsIMutI	CAGTG	6 cut(s)	55, 87, 274, 920, 1270, 1285
Cac8I	GCNNGC	3 cut(s)	948, 952, 1342
CciI	TCATGA	1 cut(s)	1397
Cfr13I	GGNCC	2 cut(s)	72, 1163
Csp6I	GTAC	3 cut(s)	549, 775, 1102
CspCI	CAANNNNNGTGG	2 cut(s)	742, 777
CviQI	GTAC	3 cut(s)	549, 775, 1102
DpnI	GATC	6 cut(s)	111, 566, 632, 850, 861, 1016
DpnII	GATC	6 cut(s)	109, 564, 630, 848, 859, 1014
EaeI	YGGCCR	1 cut(s)	924
Eam1104I	CTCTTC	3 cut(s)	181, 507, 837
EarI	CTCTTC	3 cut(s)	181, 507, 837
Eco130I	CCWWGG	1 cut(s)	927
Eco24I	GRGCYC	1 cut(s)	787
Eco31I	GGTCTC	1 cut(s)	491
Eco47I	GGWCC	1 cut(s)	72
Eco57I	CTGAAG	2 cut(s)	488, 1146
EcoRI	GAATTC	1 cut(s)	121
EcoRII	CCWGG	2 cut(s)	235, 621
EcoT14I	CCWWGG	1 cut(s)	927
EcoT38I	GRGCYC	1 cut(s)	787
ErhI	CCWWGG	1 cut(s)	927
FbaI	TGATCA	1 cut(s)	564
FblI	GTMKAC	1 cut(s)	866
Fnu4HI	GCNGC	3 cut(s)	23, 639, 1241
FokI	GGATG	3 cut(s)	842, 967, 1071
FriOI	GRGCYC	1 cut(s)	787
Fsp4HI	GCNGC	3 cut(s)	23, 639, 1241
FspBI	CTAG	2 cut(s)	60, 714
GluI	GCNGC	3 cut(s)	23, 639, 1241
GsaI	CCCAGC	1 cut(s)	801
GsuI	CTGGAG	1 cut(s)	219
HaeIII	GGCC	2 cut(s)	926, 1165
HapII	CCGG	1 cut(s)	1172
HindIII	AAGCTT	2 cut(s)	813, 1128
HinfI	GANTC	3 cut(s)	53, 240, 935
HpaII	CCGG	1 cut(s)	1172
Hpy166II	GTNNAC	3 cut(s)	867, 905, 1064
Hpy188I	TCNGA	6 cut(s)	127, 515, 709, 1097, 1228, 1252
Hpy188III	TCNNGA	4 cut(s)	29, 200, 248, 1398
Hpy8I	GTNNAC	3 cut(s)	867, 905, 1064
Hpy99I	CGWCG	1 cut(s)	1072
HpyAV	CCTTC	4 cut(s)	588, 1049, 1208, 1316
HpyCH4III	ACNGT	8 cut(s)	82, 269, 294, 428, 967, 1072, 1265, 1300
HpyCH4IV	ACGT	2 cut(s)	675, 1381
HpyCH4V	TGCA	9 cut(s)	4, 22, 151, 368, 469, 534, 641, 1048, 1240
HpySE526I	ACGT	2 cut(s)	675, 1381
KpnI	GGTACC	1 cut(s)	552
Ksp22I	TGATCA	1 cut(s)	564
Kzo9I	GATC	6 cut(s)	109, 564, 630, 848, 859, 1014
LguI	GCTCTTC	2 cut(s)	507, 837
LmnI	GCTCC	1 cut(s)	876
Lsp1109I	GCAGC	3 cut(s)	34, 625, 1252
LweI	GCATC	2 cut(s)	118, 700
MaeI	CTAG	2 cut(s)	60, 714
MaeII	ACGT	2 cut(s)	675, 1381
MaeIII	GTNAC	2 cut(s)	804, 1075
MalI	GATC	6 cut(s)	111, 566, 632, 850, 861, 1016
MboI	GATC	6 cut(s)	109, 564, 630, 848, 859, 1014
MboII	GAAGA	7 cut(s)	115, 168, 494, 729, 854, 926, 1241
MflI	RGATCY	1 cut(s)	109
MhlI	GDGCHC	1 cut(s)	787
MlsI	TGGCCA	1 cut(s)	926
MluNI	TGGCCA	1 cut(s)	926
MlyI	GAGTC	2 cut(s)	234, 944
MmeI	TCCRAC	1 cut(s)	66
MnlI	CCTC	9 cut(s)	31, 36, 63, 184, 252, 390, 411, 766, 1091
Mox20I	TGGCCA	1 cut(s)	926
MroXI	GAANNNNTTC	2 cut(s)	383, 404
MscI	TGGCCA	1 cut(s)	926
MseI	TTAA	5 cut(s)	612, 986, 1002, 1314, 1391
MslI	CAYNNNNRTG	3 cut(s)	1109, 1115, 1349
Msp20I	TGGCCA	1 cut(s)	926
MspI	CCGG	1 cut(s)	1172
MspR9I	CCNGG	2 cut(s)	237, 623
MvaI	CCWGG	2 cut(s)	237, 623
NdeII	GATC	6 cut(s)	109, 564, 630, 848, 859, 1014
NlaIV	GGNNCC	3 cut(s)	111, 401, 550
NspV	TTCGAA	1 cut(s)	1294
PagI	TCATGA	1 cut(s)	1397
PciSI	GCTCTTC	2 cut(s)	507, 837
PdmI	GAANNNNTTC	2 cut(s)	383, 404
PfeI	GAWTC	1 cut(s)	53
PfoI	TCCNGGA	2 cut(s)	235, 621
PkrI	GCNGC	3 cut(s)	24, 640, 1242
PleI	GAGTC	2 cut(s)	234, 943
PpsI	GAGTC	2 cut(s)	234, 943
PsiI	TTATAA	1 cut(s)	15
Psp6I	CCWGG	2 cut(s)	235, 621
PspFI	CCCAGC	1 cut(s)	797
PspGI	CCWGG	2 cut(s)	235, 621
PspN4I	GGNNCC	3 cut(s)	111, 401, 550
PspPI	GGNCC	2 cut(s)	72, 1163
PsuI	RGATCY	1 cut(s)	109
RsaI	GTAC	3 cut(s)	550, 776, 1103
RsaNI	GTAC	3 cut(s)	549, 775, 1102
RseI	CAYNNNNRTG	3 cut(s)	1109, 1115, 1349
SapI	GCTCTTC	2 cut(s)	507, 837
SaqAI	TTAA	5 cut(s)	612, 986, 1002, 1314, 1391
SatI	GCNGC	3 cut(s)	23, 639, 1241
Sau3AI	GATC	6 cut(s)	109, 564, 630, 848, 859, 1014
Sau96I	GGNCC	2 cut(s)	72, 1163
SchI	GAGTC	2 cut(s)	234, 944
ScrFI	CCNGG	2 cut(s)	237, 623
SduI	GDGCHC	1 cut(s)	787
SfaNI	GCATC	2 cut(s)	118, 700
SfuI	TTCGAA	1 cut(s)	1294
SinI	GGWCC	1 cut(s)	72
SmiMI	CAYNNNNRTG	3 cut(s)	1109, 1115, 1349
SmlI	CTYRAG	1 cut(s)	27
SmoI	CTYRAG	1 cut(s)	27
SsiI	CCGC	2 cut(s)	546, 898
SspI	AATATT	1 cut(s)	618
SspMI	CTAG	2 cut(s)	60, 714
StyD4I	CCNGG	2 cut(s)	235, 621
StyI	CCWWGG	1 cut(s)	927
TaaI	ACNGT	8 cut(s)	82, 269, 294, 428, 967, 1072, 1265, 1300
TaiI	ACGT	2 cut(s)	678, 1384
TaqI	TCGA	4 cut(s)	478, 592, 793, 1294
TatI	WGTACW	1 cut(s)	774
TfiI	GAWTC	1 cut(s)	53
Tru1I	TTAA	5 cut(s)	612, 986, 1002, 1314, 1391
Tru9I	TTAA	5 cut(s)	612, 986, 1002, 1314, 1391
TscAI	CASTG	6 cut(s)	55, 87, 274, 927, 1270, 1285
TseI	GCWGC	3 cut(s)	22, 638, 1240
TspGWI	ACGGA	2 cut(s)	623, 1323
TspRI	CASTG	6 cut(s)	55, 87, 274, 927, 1270, 1285
VpaK11BI	GGWCC	1 cut(s)	72
XapI	RAATTY	5 cut(s)	121, 156, 165, 252, 1032
XcmI	CCANNNNNNNNNTGG	1 cut(s)	82
XmiI	GTMKAC	1 cut(s)	866
XmnI	GAANNNNTTC	2 cut(s)	383, 404
XspI	CTAG	2 cut(s)	60, 714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.