Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0007077

Physical Location & Seq

Genomic Coordinates Reverse (-)

3678351 .. 3681500

Gene Structure 3150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g03800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3150 bp

ATGAGAAGCTTAATCAAACTACAACGCTTGTGTTCGAGCTCAAGCTGCAAGATTATCCATTTCCGCTTCTCAAACTTGTACAAGATTAATCGTTTTGCAACGGTTGCTCAACCATCAAAGCCTAATAAGAAAACCCACTCCAAACAAGCACCAGAAACCGGCGGATTTGGCTCGCTCTTCACTGAAATTACTGAGATTTTGGGAGCCGAAAACGTTACTGCGGATAAAACCCCATCTGGGTTTTTGATTTCGGAGGAAACCCAGGTGAGGGTTGGTGAGGTTGGGGAAGATTGCCAACCTTGCACGCAAACTGTTTGTAAAAATGCGGAGGAGAGTGTACTGCAAGAAAAGAAAGATATAACAGGTTTGGAGGATGCGCAGGTGGAAAATTTGGCTGAAAGTGATGTTAGCCCCGTGGTTCAGGAGGTTACAAAGATTGTCAGGGCGGAGAGTGGTTTGGTTTCAATGGAGGAGATGTTAGAAAAATCGGGTTTTCCGTTGGATTCAGATATTGTTGACAAAGTGTTGAAGAGGTGCTTTAAAGTGCCACATTTGGCTTTGAGGTTCTTCAATTGGGTGAAGCTCAAAGAAGGGTTCTGTCATACAACTAAGACCTATAATACCATGCTGTTTATAGCTGGGGGTGCAAAAGAGTTCGGGATGGTGGAGAAGTTGATGGAGGAAATGGAAAAGCATCTGTGCGAGAAAGATTTTAAGACTTGGACTATTCTCATCTCACAGTATGGAAATGCTAAGTTTATTGGCAAAGCATTGTTCTTCTATGAAAAGATGAGGAAAGAAGGTTTTGAACCGGATGTAGTGGTTTACAGGTCGATGATACGTGCACTGTGTAATACTGGAAAACCTGAAGTTGCGATGGAATTTTACAAGGAGATGGTACAGAAGGACATGGGACTTAGCATAAATTTATACAAGCTGTTATTGAATGGTATAGCTAGCTCCGGCGATACTGCTTCTATTGCCTTGGTTTCAGATGACATGATTAGAGTTTCGCAGATTCCAGAACACATTGTTTATGGTTGTGTCTTGAAGAGTTTCTGCATATCTGGAAGAATCAGAGAAGCTTTGGAATTTATTCGTGAGCTCAAGAATAAAGAGGTTATGCTTGGCCCTGATTATTTTGAGGCTTTGGTGAAAGGATTGTGCATGGCTGATAGAATCACAGATGCTTTGGAAATTTTGGAAATTATGAAGAGGAGAAATATTGTTGATGGGAAGGTTTACGGGATTATCATCAATGGGTACTTAAGAAATAATGATGCTGATAAAGCGCTCGATCTGTTTCATAGCATGAAAGAATCTGGATACGTGCCTACAACTTCTACCTACACAGAACTGATGCAACACCTCTTCAAGTTGAATGAATTTCAAAAGGGCAGTGATCTGTATGATGAGATGCTGGAAAGCGAAGTTGAGCCAGATATTGTGGCGATCACAGCCATGGTTGCAGGTCAGGTTCGTCAAAACCGTATATCTGAAGCATGGAAAATATTTAATAGTATGAAGGACAAAGGCATCAAGCCCACATTGAAGTCGTATTCTATATTCATTAAGGAGCTTTGTAGAATTTCAAGGACAGAAGAGATTCTCAAGGTCTTTGATGATATGCGAGCATCTGATATAGTCATTCGAGATGACATATTTTATTTGGCTATGTATCATATGGAGAAAAAGGGAGAGATGGATAACCTTGAAAAAGTAAAGCAGTTGCAGAGGATCTATAAACTTCATCCCCGAGAAAGAGAAGAGGTTTCTAATATTGAAGCATCCGGGGGAGACGAACTCAGTACACGGACGGACTTTAATTATTTACAACCAGCGAAGATGGATTGTACGTTAGTGGAGCCGCTTTCAAAGGCTTATGATGAGCATCATTTGCAAGATATTTGTAAAATTCTGTCCTCTTCAACAGATTGGCCCTTAGTTCAGGAAGCTTTGAAGAATTCTGCTGTTGATTTCACTCCAGGACTCGTTGTGGAAATTTTGAGGAATAGCAGCGTGCATGGTTTCGTAGCATTACAATTTTTCGCGTGGGTAGGAAAGCAAACTGGTTACAGCCACACTACTGATACTTACAACATGGCTATCAAAACCGCAGGGCGAGGGAAAGATTTCAAGCACATGAGAAACCTCTTTTACGAAATGAGAAGAAAAGGTTTCTCAATCACACCAGATACATGGACAATAATGATAATGCAATATGGTCGAACAGGTATGACAGAGATTGCTCTGCGGATTTTTGGTGAGATGAAGTCTAGTAATTGCCACCCAACTCTTAGTACCTACAAGTATTTAGTCATATCTCTTTGTGGGAGAAAAGGTAGAAAGGTAGACGAAGCAATTAGAATTTTCAAGGAGATGATCCGTGCCAGTCATGTACCTGACAAAGAGTTGGTTGAAACGTATCTTGGTTGTTTATGTGAAGTTGGTAAGCTCTCAGATGCCAGAAGGTGCATAGATTCTCTTCCTAAAGTTGGTTTTTCGATTCCTCTTAGTTATTCCTTGTACATTAGGGCTCTATGTCGAGCCGGGAGGTTGCAAGAAGCTTCAGCATTGATGGATAATGTTGGGGAAGACCGATCAAAACTGGATCAGTATACTTATGGGAGCCTTGTACATGGACTTCTGCGGAGTGGACAACTAGAAGCAGCACTGGCCAAGGTGGATTCTATGAAGCAGGCGGGTGTAAATCCAACCGTCCATGTTTATACATCCTTAATAGTTCACTACTTGAGAGAGAAGCAGATAGGAAAGGCTTTAGAAATTTTTAAGGAAATGCAACAGAAGGGTTGTAAACCAACAGTCATTACCTATTCTGCGCTTATTCGAGGGTACATGAACATGGAAATGGTTTCCGAAGCTTGGGATGTCTTTCACAACATGAAACTTACAGGAACATTGCCAGATTTTAGAACGTATTCGATGTTCATCACTTGTCTTTGTAAGATGGGCAAATCTGAAGAAGCAATGCGGCTTATAACTGAAATGTTGGAAAGTGGGATTGTTCCGAGTGTGGTGAATTTTCGAACCATATTTTACGGGCTTAACAGAGAAGGTAAGCAAGATTTGGCTCGCACTGTAATGGAGCAAAAGCTATCATTAATAAGAAGCCGCAAGGTGTTAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

1050

Amino Acids

119.28

Weight (kDa)

7.99

Isoelectric Point (pI)

29.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	239 - 285	1e-09	PPR repeat family
PPR_1	PF12854	268 - 300	1.3e-06	PPR repeat
PPR_2	PF13041	271 - 317	2.8e-07	PPR repeat family
PPR	PF01535	274 - 303	5.1e-06	PPR repeat
PPR_2	PF13041	414 - 458	3.7e-10	PPR repeat family
PPR	PF01535	414 - 442	3.7e-06	PPR repeat
TPR_24	PF23276	415 - 507	8e-06	Fungal tetratrico peptide repeats
PPR_long	PF17177	423 - 553	5.3e-10	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	445 - 490	6.9e-07	PPR repeat family
PPR_3	PF13812	469 - 525	2e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	480 - 529	5.4e-14	PPR repeat family
PPR_3	PF13812	718 - 778	2.8e-07	Pentatricopeptide repeat domain
PPR	PF01535	733 - 762	2.3e-06	PPR repeat
PPR_2	PF13041	733 - 777	3e-08	PPR repeat family
TPR_24	PF23276	850 - 967	1.7e-08	Fungal tetratrico peptide repeats
PPR_3	PF13812	859 - 915	2.9e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	871 - 914	8.5e-07	PPR repeat family
PPR_long	PF17177	884 - 1018	1.2e-10	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	905 - 953	4.6e-15	PPR repeat family
TPR_24	PF23276	908 - 999	3.1e-06	Fungal tetratrico peptide repeats
PPR_3	PF13812	909 - 952	4.6e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	936 - 969	1.4e-06	PPR repeat
PPR_2	PF13041	940 - 989	1.9e-13	PPR repeat family
PPR_1	PF12854	974 - 1003	4.4e-07	PPR repeat
PPR	PF01535	979 - 1008	7.1e-06	PPR repeat
PPR_2	PF13041	979 - 1022	1.5e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0007077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06400
fragaria_vesca	FvH4_6g20810 FvH4_6g20810 FvH4_6g20810
malus_domestica	MD12G1044100.v1.1
prunus_persica	Prupe.7G091000_v2.0.a1
pyrus_communis	pycom12g03800
rosa_chinensis	RchiOBHm_Chr3g0476881
rosa_laevigata	RLG00000023746
rosa_multiflora	Rmu_sc0000288.1_g000033
rosa_roxburghii	Rroxscaffold_6G00403680 Rroxscaffold_6G00404930
rosa_rugosa	Rorug03G0157400
rosa_samantha	Rh3AG207600 Rh3AG229900 Rh3BG240200 Rh3BG241300 Rh3CG233900 Rh3CG235000 Rh3CG235700 Rh3CG259900 Rh3DG233900
rosa_wichuraiana	Rw0G011140 Rw3G018900 Rw3G020670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2999
AarI	CACCTGC	1 cut(s)	370
Acc16I	TGCGCA	1 cut(s)	378
Acc36I	ACCTGC	2 cut(s)	370, 1460
AccI	GTMKAC	2 cut(s)	2352, 2618
AccII	CGCG	1 cut(s)	2051
AclI	AACGTT	1 cut(s)	213
AclWI	GGATC	3 cut(s)	1745, 2377, 2619
AcoI	YGGCCR	1 cut(s)	2676
AcuI	CTGAAG	4 cut(s)	888, 1518, 2553, 3000
AfeI	AGCGCT	1 cut(s)	1293
AfiI	CCNNNNNNNGG	6 cut(s)	158, 237, 267, 268, 2495, 2883
AflII	CTTAAG	1 cut(s)	1267
AjnI	CCWGG	2 cut(s)	261, 1984
AjuI	GAANNNNNNNTTGG	2 cut(s)	2412, 2444
Alw21I	GWGCWC	3 cut(s)	41, 847, 1107
Alw26I	GTCTC	1 cut(s)	1791
Alw44I	GTGCAC	1 cut(s)	843
AlwI	GGATC	3 cut(s)	1745, 2377, 2619
Ama87I	CYCGRG	1 cut(s)	1755
Aor51HI	AGCGCT	1 cut(s)	1293
AoxI	GGCC	3 cut(s)	1129, 1937, 2676
ApaLI	GTGCAC	1 cut(s)	843
ApeKI	GCWGC	3 cut(s)	45, 2016, 2669
AseI	ATTAAT	2 cut(s)	87, 3122
Asp700I	GAANNNNTTC	5 cut(s)	1055, 1095, 1605, 2132, 2938
AspLEI	GCGC	3 cut(s)	379, 1294, 2842
AspS9I	GGNCC	2 cut(s)	1130, 1938
AsuC2I	CCSGG	2 cut(s)	1792, 2551
AsuHPI	GGTGA	6 cut(s)	277, 287, 589, 1165, 2276, 3049
AsuII	TTCGAA	1 cut(s)	3046
AsuNHI	GCTAGC	1 cut(s)	956
AvaI	CYCGRG	1 cut(s)	1755
BaeGI	GKGCMC	1 cut(s)	847
BalI	TGGCCA	1 cut(s)	2678
BanII	GRGCYC	3 cut(s)	41, 1107, 2539
BarI	GAAGNNNNNNTAC	2 cut(s)	2628, 2660
BbsI	GAAGAC	1 cut(s)	2601
Bbv12I	GWGCWC	3 cut(s)	41, 847, 1107
BbvI	GCAGC	3 cut(s)	32, 2028, 2681
BcgI	CGANNNNNNTGC	2 cut(s)	2207, 2241
BciT130I	CCWGG	2 cut(s)	263, 1986
BciVI	GTATCC	1 cut(s)	1319
BcnI	CCSGG	2 cut(s)	1792, 2551
BcoDI	GTCTC	1 cut(s)	1791
BfaI	CTAG	3 cut(s)	957, 2277, 2663
BfoI	RGCGCY	1 cut(s)	1295
BfrI	CTTAAG	1 cut(s)	1267
BfuAI	ACCTGC	2 cut(s)	370, 1460
BfuI	GTATCC	1 cut(s)	1319
BisI	GCNGC	6 cut(s)	46, 1868, 2017, 2670, 2993, 3133
BlsI	GCNGC	6 cut(s)	47, 1869, 2018, 2671, 2994, 3134
Bme1390I	CCNGG	4 cut(s)	263, 1792, 1986, 2551
BmeT110I	CYCGRG	1 cut(s)	1755
BmgT120I	GGNCC	2 cut(s)	1130, 1938
BmiI	GGNNCC	3 cut(s)	205, 1866, 2630
BmrFI	CCNGG	4 cut(s)	263, 1792, 1986, 2551
BmtI	GCTAGC	1 cut(s)	960
BpiI	GAAGAC	1 cut(s)	2601
BplI	GAGNNNNNCTC	2 cut(s)	1788, 1820
BpmI	CTGGAG	1 cut(s)	1968
Bpu14I	TTCGAA	1 cut(s)	3046
BpuEI	CTTGAG	4 cut(s)	25, 1091, 1595, 2773
BpuMI	CCSGG	2 cut(s)	1792, 2551
BsaAI	YACGTR	2 cut(s)	842, 1330
BsaBI	GATNNNNATC	3 cut(s)	1253, 1890, 2948
BsaJI	CCNNGG	6 cut(s)	261, 414, 984, 1461, 1791, 2679
BsaWI	WCCGGW	1 cut(s)	811
BsaXI	ACNNNNNCTCC	4 cut(s)	461, 491, 2326, 2356
Bsc4I	CCNNNNNNNGG	6 cut(s)	158, 237, 267, 268, 2495, 2883
Bse118I	RCCGGY	1 cut(s)	158
Bse1I	ACTGG	5 cut(s)	862, 2074, 2391, 2613, 2679
Bse3DI	GCAATG	2 cut(s)	2918, 2994
Bse8I	GATNNNNATC	3 cut(s)	1253, 1890, 2948
BseBI	CCWGG	2 cut(s)	263, 1986
BseDI	CCNNGG	6 cut(s)	261, 414, 984, 1461, 1791, 2679
BseGI	GGATG	7 cut(s)	379, 666, 820, 1750, 1787, 2732, 2893
BseJI	GATNNNNATC	3 cut(s)	1253, 1890, 2948
BseLI	CCNNNNNNNGG	6 cut(s)	158, 237, 267, 268, 2495, 2883
BseMI	GCAATG	2 cut(s)	2918, 2994
BseMII	CTCAG	3 cut(s)	183, 1819, 2472
BseNI	ACTGG	5 cut(s)	862, 2074, 2391, 2613, 2679
BseRI	GAGGAG	3 cut(s)	344, 485, 1231
BseSI	GKGCMC	1 cut(s)	847
BseXI	GCAGC	3 cut(s)	32, 2028, 2681
BseYI	CCCAGC	1 cut(s)	638
Bsh1236I	CGCG	1 cut(s)	2051
BshFI	GGCC	3 cut(s)	1131, 1939, 2678
BsiHKAI	GWGCWC	3 cut(s)	41, 847, 1107
BsiHKCI	CYCGRG	1 cut(s)	1755
BsiSI	CCGG	5 cut(s)	159, 812, 963, 1791, 2550
BslFI	GGGAC	1 cut(s)	927
BslI	CCNNNNNNNGG	6 cut(s)	158, 237, 267, 268, 2495, 2883
BsmAI	GTCTC	1 cut(s)	1791
BsmBI	CGTCTC	1 cut(s)	1791
BsmFI	GGGAC	1 cut(s)	927
BsnI	GGCC	3 cut(s)	1131, 1939, 2678
BsoBI	CYCGRG	1 cut(s)	1755
Bsp119I	TTCGAA	1 cut(s)	3046
Bsp1286I	GDGCHC	4 cut(s)	41, 847, 1107, 2539
Bsp1407I	TGTACA	3 cut(s)	78, 2526, 2635
Bsp143I	GATC	7 cut(s)	1297, 1402, 1452, 1737, 2382, 2600, 2611
Bsp19I	CCATGG	1 cut(s)	1461
BspANI	GGCC	3 cut(s)	1131, 1939, 2678
BspCNI	CTCAG	3 cut(s)	184, 1818, 2471
BspFNI	CGCG	1 cut(s)	2051
BspLI	GGNNCC	3 cut(s)	205, 1866, 2630
BspMI	ACCTGC	2 cut(s)	370, 1460
BspOI	GCTAGC	1 cut(s)	960
BspPI	GGATC	3 cut(s)	1745, 2377, 2619
BspQI	GCTCTTC	1 cut(s)	182
BspT104I	TTCGAA	1 cut(s)	3046
BspTI	CTTAAG	1 cut(s)	1267
BsrDI	GCAATG	2 cut(s)	2918, 2994
BsrFI	RCCGGY	1 cut(s)	158
BsrGI	TGTACA	3 cut(s)	78, 2526, 2635
BsrI	ACTGG	5 cut(s)	862, 2074, 2391, 2613, 2679
BssAI	RCCGGY	1 cut(s)	158
BssECI	CCNNGG	6 cut(s)	261, 414, 984, 1461, 1791, 2679
BssMI	GATC	7 cut(s)	1297, 1402, 1452, 1737, 2382, 2600, 2611
BssNAI	GTATAC	1 cut(s)	2619
BssT1I	CCWWGG	3 cut(s)	984, 1461, 2679
Bst1107I	GTATAC	1 cut(s)	2619
Bst2UI	CCWGG	2 cut(s)	263, 1986
Bst4CI	ACNGT	8 cut(s)	103, 313, 741, 849, 1490, 2719, 2824, 3100
Bst6I	CTCTTC	9 cut(s)	182, 524, 1046, 1208, 1376, 1596, 1761, 1930, 2490
BstAFI	CTTAAG	1 cut(s)	1267
BstAPI	GCANNNNNTGC	2 cut(s)	104, 1897
BstAUI	TGTACA	3 cut(s)	78, 2526, 2635
BstBAI	YACGTR	2 cut(s)	842, 1330
BstBI	TTCGAA	1 cut(s)	3046
BstC8I	GCNNGC	7 cut(s)	173, 305, 958, 1632, 2021, 2700, 3094
BstDEI	CTNAG	9 cut(s)	192, 609, 753, 917, 1805, 1942, 2297, 2458, 2513
BstDSI	CCRYGG	2 cut(s)	414, 1461
BstF5I	GGATG	7 cut(s)	379, 666, 820, 1750, 1787, 2732, 2893
BstFNI	CGCG	1 cut(s)	2051
BstH2I	RGCGCY	1 cut(s)	1295
BstHHI	GCGC	3 cut(s)	379, 1294, 2842
BstKTI	GATC	7 cut(s)	1300, 1405, 1455, 1740, 2385, 2603, 2614
BstMAI	GTCTC	1 cut(s)	1791
BstMBI	GATC	7 cut(s)	1297, 1402, 1452, 1737, 2382, 2600, 2611
BstNI	CCWGG	2 cut(s)	263, 1986
BstSCI	CCNGG	4 cut(s)	261, 1790, 1984, 2549
BstSLI	GKGCMC	1 cut(s)	847
BstUI	CGCG	1 cut(s)	2051
BstV1I	GCAGC	3 cut(s)	32, 2028, 2681
BstV2I	GAAGAC	1 cut(s)	2601
BstX2I	RGATCY	1 cut(s)	1737
BstXI	CCANNNNNNTGG	1 cut(s)	2199
BstYI	RGATCY	1 cut(s)	1737
BstZ17I	GTATAC	1 cut(s)	2619
BsuI	GTATCC	1 cut(s)	1319
BsuRI	GGCC	3 cut(s)	1131, 1939, 2678
BtgI	CCRYGG	2 cut(s)	414, 1461
BtgZI	GCGATG	1 cut(s)	890
BtsCI	GGATG	7 cut(s)	379, 666, 820, 1750, 1787, 2732, 2893
BtsI	GCAGTG	1 cut(s)	1405
BtsIMutI	CAGTG	5 cut(s)	180, 845, 1405, 2672, 3096
BveI	ACCTGC	2 cut(s)	370, 1460
Cac8I	GCNNGC	7 cut(s)	173, 305, 958, 1632, 2021, 2700, 3094
CfoI	GCGC	3 cut(s)	379, 1294, 2842
Cfr10I	RCCGGY	1 cut(s)	158
Cfr13I	GGNCC	2 cut(s)	1130, 1938
DdeI	CTNAG	9 cut(s)	192, 609, 753, 917, 1805, 1942, 2297, 2458, 2513
DpnI	GATC	7 cut(s)	1299, 1404, 1454, 1739, 2384, 2602, 2613
DpnII	GATC	7 cut(s)	1297, 1402, 1452, 1737, 2382, 2600, 2611
DraI	TTTAAA	1 cut(s)	541
EaeI	YGGCCR	1 cut(s)	2676
Eam1104I	CTCTTC	9 cut(s)	182, 524, 1046, 1208, 1376, 1596, 1761, 1930, 2490
EarI	CTCTTC	9 cut(s)	182, 524, 1046, 1208, 1376, 1596, 1761, 1930, 2490
EciI	GGCGGA	2 cut(s)	177, 461
Ecl136II	GAGCTC	2 cut(s)	39, 1105
Eco130I	CCWWGG	3 cut(s)	984, 1461, 2679
Eco24I	GRGCYC	3 cut(s)	41, 1107, 2539
Eco47III	AGCGCT	1 cut(s)	1293
Eco53kI	GAGCTC	2 cut(s)	39, 1105
Eco57I	CTGAAG	4 cut(s)	888, 1518, 2553, 3000
Eco88I	CYCGRG	1 cut(s)	1755
EcoICRI	GAGCTC	2 cut(s)	39, 1105
EcoRI	GAATTC	1 cut(s)	1963
EcoRII	CCWGG	2 cut(s)	261, 1984
EcoT14I	CCWWGG	3 cut(s)	984, 1461, 2679
EcoT38I	GRGCYC	3 cut(s)	41, 1107, 2539
ErhI	CCWWGG	3 cut(s)	984, 1461, 2679
Esp3I	CGTCTC	1 cut(s)	1791
FalI	AAGNNNNNCTT	2 cut(s)	521, 553
FaqI	GGGAC	1 cut(s)	927
FauI	CCCGC	1 cut(s)	2695
FauNDI	CATATG	1 cut(s)	1683
FblI	GTMKAC	2 cut(s)	2352, 2618
Fnu4HI	GCNGC	6 cut(s)	46, 1868, 2017, 2670, 2993, 3133
FokI	GGATG	7 cut(s)	386, 673, 827, 1737, 1774, 2719, 2900
FriOI	GRGCYC	3 cut(s)	41, 1107, 2539
Fsp4HI	GCNGC	6 cut(s)	46, 1868, 2017, 2670, 2993, 3133
FspBI	CTAG	3 cut(s)	957, 2277, 2663
FspI	TGCGCA	1 cut(s)	378
GlaI	GCGC	3 cut(s)	378, 1293, 2841
GluI	GCNGC	6 cut(s)	46, 1868, 2017, 2670, 2993, 3133
GsaI	CCCAGC	1 cut(s)	642
GsuI	CTGGAG	1 cut(s)	1968
HaeII	RGCGCY	1 cut(s)	1295
HaeIII	GGCC	3 cut(s)	1131, 1939, 2678
HapII	CCGG	5 cut(s)	159, 812, 963, 1791, 2550
HhaI	GCGC	3 cut(s)	379, 1294, 2842
Hin6I	GCGC	3 cut(s)	377, 1292, 2840
HinP1I	GCGC	3 cut(s)	377, 1292, 2840
HincII	GTYRAC	1 cut(s)	517
HindII	GTYRAC	1 cut(s)	517
HindIII	AAGCTT	5 cut(s)	7, 1083, 1953, 2565, 2880
HpaII	CCGG	5 cut(s)	159, 812, 963, 1791, 2550
HphI	GGTGA	6 cut(s)	277, 287, 589, 1165, 2276, 3049
HpyAV	CCTTC	8 cut(s)	584, 794, 898, 1231, 1519, 2463, 2800, 3068
HpyCH4III	ACNGT	8 cut(s)	103, 313, 741, 849, 1490, 2719, 2824, 3100
HpyCH4IV	ACGT	6 cut(s)	213, 841, 1329, 1856, 2423, 2936
HpyF3I	CTNAG	9 cut(s)	192, 609, 753, 917, 1805, 1942, 2297, 2458, 2513
HpySE526I	ACGT	6 cut(s)	213, 841, 1329, 1856, 2423, 2936
HspAI	GCGC	3 cut(s)	377, 1292, 2840
Kzo9I	GATC	7 cut(s)	1297, 1402, 1452, 1737, 2382, 2600, 2611
LguI	GCTCTTC	1 cut(s)	182
LmnI	GCTCC	6 cut(s)	203, 965, 1576, 1864, 2628, 3106
Lsp1109I	GCAGC	3 cut(s)	32, 2028, 2681
MaeI	CTAG	3 cut(s)	957, 2277, 2663
MaeII	ACGT	6 cut(s)	213, 841, 1329, 1856, 2423, 2936
MaeIII	GTNAC	3 cut(s)	214, 427, 2072
MalI	GATC	7 cut(s)	1299, 1404, 1454, 1739, 2384, 2602, 2613
MboI	GATC	7 cut(s)	1297, 1402, 1452, 1737, 2382, 2600, 2611
MfeI	CAATTG	1 cut(s)	571
MflI	RGATCY	1 cut(s)	1737
MhlI	GDGCHC	4 cut(s)	41, 847, 1107, 2539
MlsI	TGGCCA	1 cut(s)	2678
MluNI	TGGCCA	1 cut(s)	2678
MlyI	GAGTC	1 cut(s)	1983
MmeI	TCCRAC	3 cut(s)	480, 2738, 2991
Mox20I	TGGCCA	1 cut(s)	2678
MroXI	GAANNNNTTC	5 cut(s)	1055, 1095, 1605, 2132, 2938
MscI	TGGCCA	1 cut(s)	2678
MslI	CAYNNNNRTG	4 cut(s)	1460, 2861, 2867, 3101
Msp20I	TGGCCA	1 cut(s)	2678
MspCI	CTTAAG	1 cut(s)	1267
MspI	CCGG	5 cut(s)	159, 812, 963, 1791, 2550
MspR9I	CCNGG	4 cut(s)	263, 1792, 1986, 2551
MunI	CAATTG	1 cut(s)	571
MvaI	CCWGG	2 cut(s)	263, 1986
MvnI	CGCG	1 cut(s)	2051
NciI	CCSGG	2 cut(s)	1792, 2551
NcoI	CCATGG	1 cut(s)	1461
NdeI	CATATG	1 cut(s)	1683
NdeII	GATC	7 cut(s)	1297, 1402, 1452, 1737, 2382, 2600, 2611
NheI	GCTAGC	1 cut(s)	956
NlaIV	GGNNCC	3 cut(s)	205, 1866, 2630
NsbI	TGCGCA	1 cut(s)	378
NspV	TTCGAA	1 cut(s)	3046
PaqCI	CACCTGC	1 cut(s)	370
PciSI	GCTCTTC	1 cut(s)	182
PcsI	WCGNNNNNNNCGW	2 cut(s)	494, 1486
PdmI	GAANNNNTTC	5 cut(s)	1055, 1095, 1605, 2132, 2938
PfeI	GAWTC	9 cut(s)	503, 1018, 1074, 1179, 1319, 1606, 2480, 2506, 2687
PfoI	TCCNGGA	1 cut(s)	1984
PkrI	GCNGC	6 cut(s)	47, 1869, 2018, 2671, 2994, 3134
PleI	GAGTC	1 cut(s)	1983
PpsI	GAGTC	1 cut(s)	1983
Ppu21I	YACGTR	2 cut(s)	842, 1330
PshBI	ATTAAT	2 cut(s)	87, 3122
PsiI	TTATAA	1 cut(s)	2999
Psp124BI	GAGCTC	2 cut(s)	41, 1107
Psp1406I	AACGTT	1 cut(s)	213
Psp6I	CCWGG	2 cut(s)	261, 1984
PspFI	CCCAGC	1 cut(s)	638
PspGI	CCWGG	2 cut(s)	261, 1984
PspN4I	GGNNCC	3 cut(s)	205, 1866, 2630
PspPI	GGNCC	2 cut(s)	1130, 1938
PsrI	GAACNNNNNNTAC	2 cut(s)	2930, 2962
PsuI	RGATCY	1 cut(s)	1737
RseI	CAYNNNNRTG	4 cut(s)	1460, 2861, 2867, 3101
SacI	GAGCTC	2 cut(s)	41, 1107
SapI	GCTCTTC	1 cut(s)	182
SatI	GCNGC	6 cut(s)	46, 1868, 2017, 2670, 2993, 3133
Sau3AI	GATC	7 cut(s)	1297, 1402, 1452, 1737, 2382, 2600, 2611
Sau96I	GGNCC	2 cut(s)	1130, 1938
SchI	GAGTC	1 cut(s)	1983
ScrFI	CCNGG	4 cut(s)	263, 1792, 1986, 2551
SduI	GDGCHC	4 cut(s)	41, 847, 1107, 2539
SfuI	TTCGAA	1 cut(s)	3046
SmiMI	CAYNNNNRTG	4 cut(s)	1460, 2861, 2867, 3101
SmlI	CTYRAG	5 cut(s)	40, 1106, 1267, 1610, 2752
SmoI	CTYRAG	5 cut(s)	40, 1106, 1267, 1610, 2752
SspI	AATATT	3 cut(s)	1225, 1512, 1780
SspMI	CTAG	3 cut(s)	957, 2277, 2663
SstI	GAGCTC	2 cut(s)	41, 1107
StyD4I	CCNGG	4 cut(s)	261, 1790, 1984, 2549
StyI	CCWWGG	3 cut(s)	984, 1461, 2679
TaaI	ACNGT	8 cut(s)	103, 313, 741, 849, 1490, 2719, 2824, 3100
TaiI	ACGT	6 cut(s)	216, 844, 1332, 1859, 2426, 2939
TaqII	GACCGA	1 cut(s)	2613
TatI	WGTACW	5 cut(s)	78, 337, 1808, 2526, 2635
TauI	GCSGC	3 cut(s)	1870, 2995, 3135
TfiI	GAWTC	9 cut(s)	503, 1018, 1074, 1179, 1319, 1606, 2480, 2506, 2687
TscAI	CASTG	5 cut(s)	187, 852, 1405, 2679, 3103
TseI	GCWGC	3 cut(s)	45, 2016, 2669
TspGWI	ACGGA	4 cut(s)	486, 1828, 1832, 2375
TspRI	CASTG	5 cut(s)	187, 852, 1405, 2679, 3103
Vha464I	CTTAAG	1 cut(s)	1267
VneI	GTGCAC	1 cut(s)	843
VspI	ATTAAT	2 cut(s)	87, 3122
XcmI	CCANNNNNNNNNTGG	1 cut(s)	269
XmiI	GTMKAC	2 cut(s)	2352, 2618
XmnI	GAANNNNTTC	5 cut(s)	1055, 1095, 1605, 2132, 2938
XspI	CTAG	3 cut(s)	957, 2277, 2663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.