Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0007077

Physical Location & Seq

Genomic Coordinates Reverse (-)

24466704 .. 24468628

Gene Structure 1925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G020670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGTCACTGCGGATGAAACCCCATCTGGGTTTTTTATTTCCGAAAAAAACCCATCTTGGGGTTGGTGAGGTTGGGGAAGAAAGCACACCTTGCACAGCAACTCTTTGTGGAAATGATAAGGTTGATGCACCGGAAGAAAAGGAAGATGTAGCTGAAACTGATGTTAGCCCAGTAGTTCGTGAGGTTTCGAAGATTGTCAGGACGGAAGATGGTTTGGTTTTGATGGAGGAACGGTTAGATGAGTTGGGTTTTCAGTTAGATCCACAGATTGTTGACAAAGTTCTGAAGAGGTGCTTTAAAGTGCCACATTTGGGTTTAAGGTTCTTTGATTGGGTGGAGCTGAACGAAGGGTTCTGTCACAAAACTAAGACTTATAATACCGTGCTGTGTATAGCTGGGGATGCAAGAGAGTTTGGGCTGGTGGAGGAGATGGAAAGGAACTTGTGCGAGAAAGATGTTAAGACCCGGACCATTCTTATCCAGATGTATGGGAAGGCTAAGTTAGTTGGAAGACCCTTGTCTTGGTTCATATGTGGGCATCTGATATGCGCATTAAAGATGACATATTCAATTGGGTTGTACTTCATATGGAGAAAAAGGGAGAGATCGATGGATAGCCTTGAAAAAGTAAGGCAGATGCAAAGTCTTTATAAATTTCAACCTCATGATGGAGAGGTATCAAGCAGTGATGCATCTAGTGGAGAGAGGACCAATACAGTGTTGGAGTTGCTACCAAAGAAGATGGATCCCTTATTGAATTCTAATGCTGATGATGACAAGGATTTGCAAGAAATTTGTAAAATTCTGTCCTCTTCAACTGACTGGTGCTTAATTCAAGAAGATTTGGAGAAGTTTGCTATTGATTACACTCCAGGACTCATTCTGGAAATTTTGAGGAATCACAGTGGGCATGGTTCGGTAGCATTACAGTTTTTCTCATGGGTAGGAGAGCAGTCTGGTTATTGCCACACTACTAGTACTTACAACATGGCTATCAAAATTGCAGGGCATGGGAAAGATTTCAAGCACATGAGATTGCTCTCCAGTTTTCAGAGAGATGAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

355

Amino Acids

40.45

Weight (kDa)

5.65

Isoelectric Point (pI)

37.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06400
fragaria_vesca	FvH4_6g20810 FvH4_6g20810 FvH4_6g20810
malus_domestica	MD12G1044100.v1.1
prunus_persica	Prupe.7G091000_v2.0.a1
pyrus_communis	pycom12g03800
rosa_chinensis	RchiOBHm_Chr3g0476881
rosa_laevigata	RLG00000023746
rosa_multiflora	Rmu_sc0000288.1_g000033
rosa_roxburghii	Rroxscaffold_6G00403680 Rroxscaffold_6G00404930
rosa_rugosa	Rorug03G0157400
rosa_samantha	Rh3AG207600 Rh3AG229900 Rh3BG240200 Rh3BG241300 Rh3CG233900 Rh3CG235000 Rh3CG235700 Rh3CG259900 Rh3DG233900
rosa_wichuraiana	Rw0G011140 Rw3G018900 Rw3G020670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	375, 651
Acc16I	TGCGCA	1 cut(s)	550
AciI	CCGC	1 cut(s)	10
AclWI	GGATC	3 cut(s)	254, 740, 753
AcsI	RAATTY	5 cut(s)	653, 757, 792, 801, 888
AcuI	CTGAAG	1 cut(s)	305
AfaI	GTAC	2 cut(s)	581, 979
AfiI	CCNNNNNNNGG	6 cut(s)	26, 57, 58, 311, 522, 668
AgsI	TTSAA	7 cut(s)	570, 623, 659, 757, 816, 836, 1024
AhlI	ACTAGT	1 cut(s)	974
AjnI	CCWGG	1 cut(s)	871
AluBI	AGCT	3 cut(s)	152, 340, 395
AluI	AGCT	3 cut(s)	152, 340, 395
AlwI	GGATC	3 cut(s)	254, 740, 753
ApoI	RAATTY	5 cut(s)	653, 757, 792, 801, 888
Asp700I	GAANNNNTTC	1 cut(s)	1019
AspLEI	GCGC	1 cut(s)	551
AspS9I	GGNCC	2 cut(s)	468, 708
AsuC2I	CCSGG	1 cut(s)	466
AsuHPI	GGTGA	1 cut(s)	77
AsuII	TTCGAA	1 cut(s)	188
AvaII	GGWCC	2 cut(s)	468, 708
BamHI	GGATCC	1 cut(s)	745
BbsI	GAAGAC	1 cut(s)	517
BccI	CCATC	8 cut(s)	30, 60, 203, 217, 424, 604, 662, 736
BciT130I	CCWGG	1 cut(s)	873
BcnI	CCSGG	1 cut(s)	466
BcuI	ACTAGT	1 cut(s)	974
BfaI	CTAG	2 cut(s)	696, 975
BmcAI	AGTACT	1 cut(s)	979
Bme1390I	CCNGG	2 cut(s)	466, 873
Bme18I	GGWCC	2 cut(s)	468, 708
BmgT120I	GGNCC	2 cut(s)	468, 708
BmiI	GGNNCC	1 cut(s)	747
BmrFI	CCNGG	2 cut(s)	466, 873
BmrI	ACTGGG	1 cut(s)	164
BmsI	GCATC	6 cut(s)	115, 391, 547, 627, 679, 701
BmuI	ACTGGG	1 cut(s)	164
BoxI	GACNNNNGTC	1 cut(s)	517
BpiI	GAAGAC	1 cut(s)	517
BpmI	CTGGAG	2 cut(s)	855, 1027
Bpu14I	TTCGAA	1 cut(s)	188
BpuMI	CCSGG	1 cut(s)	466
Bsa29I	ATCGAT	1 cut(s)	608
BsaWI	WCCGGW	1 cut(s)	130
BsaXI	ACNNNNNCTCC	2 cut(s)	218, 248
Bsc4I	CCNNNNNNNGG	6 cut(s)	26, 57, 58, 311, 522, 668
Bse1I	ACTGG	3 cut(s)	170, 827, 1044
BseBI	CCWGG	1 cut(s)	873
BseCI	ATCGAT	1 cut(s)	608
BseGI	GGATG	2 cut(s)	18, 406
BseLI	CCNNNNNNNGG	6 cut(s)	26, 57, 58, 311, 522, 668
BseNI	ACTGG	3 cut(s)	170, 827, 1044
BseRI	GAGGAG	1 cut(s)	440
BseYI	CCCAGC	1 cut(s)	395
BshVI	ATCGAT	1 cut(s)	608
BsiSI	CCGG	2 cut(s)	131, 466
BslI	CCNNNNNNNGG	6 cut(s)	26, 57, 58, 311, 522, 668
Bsp119I	TTCGAA	1 cut(s)	188
Bsp143I	GATC	3 cut(s)	259, 605, 745
BspACI	CCGC	1 cut(s)	10
BspDI	ATCGAT	1 cut(s)	608
BspHI	TCATGA	1 cut(s)	664
BspLI	GGNNCC	1 cut(s)	747
BspPI	GGATC	3 cut(s)	254, 740, 753
BspT104I	TTCGAA	1 cut(s)	188
BsrI	ACTGG	3 cut(s)	170, 827, 1044
BssMI	GATC	3 cut(s)	259, 605, 745
Bst2UI	CCWGG	1 cut(s)	873
Bst4CI	ACNGT	5 cut(s)	234, 382, 718, 905, 930
Bst6I	CTCTTC	3 cut(s)	281, 817, 1056
BstAPI	GCANNNNNTGC	1 cut(s)	90
BstBI	TTCGAA	1 cut(s)	188
BstDEI	CTNAG	2 cut(s)	366, 498
BstF5I	GGATG	2 cut(s)	18, 406
BstHHI	GCGC	1 cut(s)	551
BstKTI	GATC	3 cut(s)	262, 608, 748
BstMBI	GATC	3 cut(s)	259, 605, 745
BstMWI	GCNNNNNNNGC	2 cut(s)	90, 401
BstNI	CCWGG	1 cut(s)	873
BstPAI	GACNNNNGTC	1 cut(s)	517
BstSCI	CCNGG	2 cut(s)	464, 871
BstV2I	GAAGAC	1 cut(s)	517
BstX2I	RGATCY	2 cut(s)	259, 745
BstXI	CCANNNNNNTGG	1 cut(s)	488
BstYI	RGATCY	2 cut(s)	259, 745
Bsu15I	ATCGAT	1 cut(s)	608
BsuTUI	ATCGAT	1 cut(s)	608
BtsCI	GGATG	2 cut(s)	18, 406
BtsI	GCAGTG	2 cut(s)	5, 691
BtsIMutI	CAGTG	4 cut(s)	5, 691, 723, 910
CciI	TCATGA	1 cut(s)	664
CfoI	GCGC	1 cut(s)	551
Cfr13I	GGNCC	2 cut(s)	468, 708
ClaI	ATCGAT	1 cut(s)	608
Csp6I	GTAC	2 cut(s)	580, 978
CviAII	CATG	6 cut(s)	665, 911, 939, 988, 1010, 1030
CviJI	RGCY	8 cut(s)	152, 168, 340, 395, 418, 497, 618, 992
CviKI_1	RGCY	8 cut(s)	152, 168, 340, 395, 418, 497, 618, 992
CviQI	GTAC	2 cut(s)	580, 978
DdeI	CTNAG	2 cut(s)	366, 498
DpnI	GATC	3 cut(s)	261, 607, 747
DpnII	GATC	3 cut(s)	259, 605, 745
DraI	TTTAAA	1 cut(s)	298
Eam1104I	CTCTTC	3 cut(s)	281, 817, 1056
EarI	CTCTTC	3 cut(s)	281, 817, 1056
Eco47I	GGWCC	2 cut(s)	468, 708
Eco57I	CTGAAG	1 cut(s)	305
EcoRI	GAATTC	1 cut(s)	757
EcoRII	CCWGG	1 cut(s)	871
EcoT22I	ATGCAT	1 cut(s)	694
FaeI	CATG	6 cut(s)	668, 914, 942, 991, 1013, 1033
FalI	AAGNNNNNCTT	4 cut(s)	73, 105, 278, 310
FatI	CATG	6 cut(s)	664, 910, 938, 987, 1009, 1029
FauNDI	CATATG	2 cut(s)	530, 587
FokI	GGATG	2 cut(s)	25, 413
FspAI	RTGCGCAY	1 cut(s)	550
FspBI	CTAG	2 cut(s)	696, 975
FspI	TGCGCA	1 cut(s)	550
GlaI	GCGC	1 cut(s)	550
GsaI	CCCAGC	1 cut(s)	399
GsuI	CTGGAG	2 cut(s)	855, 1027
HapII	CCGG	2 cut(s)	131, 466
HhaI	GCGC	1 cut(s)	551
Hin1II	CATG	6 cut(s)	668, 914, 942, 991, 1013, 1033
Hin6I	GCGC	1 cut(s)	549
HinP1I	GCGC	1 cut(s)	549
HincII	GTYRAC	1 cut(s)	274
HindII	GTYRAC	1 cut(s)	274
HinfI	GANTC	2 cut(s)	876, 898
HpaII	CCGG	2 cut(s)	131, 466
HphI	GGTGA	1 cut(s)	77
Hpy166II	GTNNAC	1 cut(s)	274
Hpy188I	TCNGA	4 cut(s)	42, 285, 543, 1053
Hpy188III	TCNNGA	6 cut(s)	179, 199, 481, 665, 836, 884
Hpy8I	GTNNAC	1 cut(s)	274
HpyAV	CCTTC	2 cut(s)	341, 487
HpyCH4III	ACNGT	5 cut(s)	234, 382, 718, 905, 930
HpyCH4V	TGCA	7 cut(s)	93, 128, 404, 640, 692, 787, 1004
HpyF10VI	GCNNNNNNNGC	2 cut(s)	90, 401
HpyF3I	CTNAG	2 cut(s)	366, 498
Hsp92II	CATG	6 cut(s)	668, 914, 942, 991, 1013, 1033
HspAI	GCGC	1 cut(s)	549
Kzo9I	GATC	3 cut(s)	259, 605, 745
LmnI	GCTCC	1 cut(s)	337
LweI	GCATC	6 cut(s)	115, 391, 547, 627, 679, 701
MaeI	CTAG	2 cut(s)	696, 975
MaeIII	GTNAC	2 cut(s)	3, 356
MalI	GATC	3 cut(s)	261, 607, 747
MboI	GATC	3 cut(s)	259, 605, 745
MfeI	CAATTG	1 cut(s)	570
MflI	RGATCY	2 cut(s)	259, 745
MluCI	AATT	8 cut(s)	570, 653, 757, 792, 801, 831, 888, 999
MlyI	GAGTC	1 cut(s)	870
MmeI	TCCRAC	2 cut(s)	487, 702
Mph1103I	ATGCAT	1 cut(s)	694
MroXI	GAANNNNTTC	1 cut(s)	1019
MseI	TTAA	5 cut(s)	297, 317, 459, 554, 830
MspI	CCGG	2 cut(s)	131, 466
MspR9I	CCNGG	2 cut(s)	466, 873
MunI	CAATTG	1 cut(s)	570
MvaI	CCWGG	1 cut(s)	873
MwoI	GCNNNNNNNGC	2 cut(s)	90, 401
NciI	CCSGG	1 cut(s)	466
NdeI	CATATG	2 cut(s)	530, 587
NdeII	GATC	3 cut(s)	259, 605, 745
NlaIII	CATG	6 cut(s)	668, 914, 942, 991, 1013, 1033
NlaIV	GGNNCC	1 cut(s)	747
NmuCI	GTSAC	2 cut(s)	3, 356
NsbI	TGCGCA	1 cut(s)	550
NsiI	ATGCAT	1 cut(s)	694
NspV	TTCGAA	1 cut(s)	188
PagI	TCATGA	1 cut(s)	664
PdmI	GAANNNNTTC	1 cut(s)	1019
PfeI	GAWTC	1 cut(s)	898
PfoI	TCCNGGA	1 cut(s)	871
PleI	GAGTC	1 cut(s)	870
PpsI	GAGTC	1 cut(s)	870
PshAI	GACNNNNGTC	1 cut(s)	517
PsiI	TTATAA	2 cut(s)	375, 651
Psp6I	CCWGG	1 cut(s)	871
PspFI	CCCAGC	1 cut(s)	395
PspGI	CCWGG	1 cut(s)	871
PspN4I	GGNNCC	1 cut(s)	747
PspPI	GGNCC	2 cut(s)	468, 708
PsuI	RGATCY	2 cut(s)	259, 745
RsaI	GTAC	2 cut(s)	581, 979
RsaNI	GTAC	2 cut(s)	580, 978
SaqAI	TTAA	5 cut(s)	297, 317, 459, 554, 830
Sau3AI	GATC	3 cut(s)	259, 605, 745
Sau96I	GGNCC	2 cut(s)	468, 708
ScaI	AGTACT	1 cut(s)	979
SchI	GAGTC	1 cut(s)	870
ScrFI	CCNGG	2 cut(s)	466, 873
SfaNI	GCATC	6 cut(s)	115, 391, 547, 627, 679, 701
SfuI	TTCGAA	1 cut(s)	188
SinI	GGWCC	2 cut(s)	468, 708
SpeI	ACTAGT	1 cut(s)	974
Sse9I	AATT	8 cut(s)	570, 653, 757, 792, 801, 831, 888, 999
SsiI	CCGC	1 cut(s)	10
SspMI	CTAG	2 cut(s)	696, 975
StyD4I	CCNGG	2 cut(s)	464, 871
TaaI	ACNGT	5 cut(s)	234, 382, 718, 905, 930
TaqI	TCGA	2 cut(s)	188, 608
TasI	AATT	8 cut(s)	570, 653, 757, 792, 801, 831, 888, 999
TatI	WGTACW	2 cut(s)	579, 977
TfiI	GAWTC	1 cut(s)	898
Tru1I	TTAA	5 cut(s)	297, 317, 459, 554, 830
Tru9I	TTAA	5 cut(s)	297, 317, 459, 554, 830
TscAI	CASTG	4 cut(s)	12, 691, 723, 910
TseFI	GTSAC	2 cut(s)	3, 356
Tsp45I	GTSAC	2 cut(s)	3, 356
TspDTI	ATGAA	3 cut(s)	29, 517, 574
TspGWI	ACGGA	1 cut(s)	218
TspRI	CASTG	4 cut(s)	12, 691, 723, 910
VpaK11BI	GGWCC	2 cut(s)	468, 708
XapI	RAATTY	5 cut(s)	653, 757, 792, 801, 888
XcmI	CCANNNNNNNNNTGG	2 cut(s)	59, 718
XmnI	GAANNNNTTC	1 cut(s)	1019
XspI	CTAG	2 cut(s)	696, 975
ZrmI	AGTACT	1 cut(s)	979
Zsp2I	ATGCAT	1 cut(s)	694

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.