Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013027

Physical Location & Seq

Genomic Coordinates Reverse (-)

2089445 .. 2090430

Gene Structure 986 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G06760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGCAGTCGATGAAAGAAACAGCTTCGAATATTGCAGCTTCTGCAAAATCTGGCATGGACAAAACCAAAGCTACCTTGGAGGAAAAGGCGGAGAAGATGAAGACACGAGACCCTGTTCAGAAACAGATGGCTACACAGGTTAAAGAAGATAAGATCAATCAAGCTGAGATGCAGAAGAGAGAAACGCGTCAGCACAACGCGGCCATGAAAGAAGCGGCTGGAGCCGGAACCGGTTTAGGTTTGGGGACGGCCACTCACTCGACCACTGGACAAGTCGGACACGGCACTGGGACACATCAGATGTCGGCTCTGCCTGGTCACGGAACGGGACAACTGACCGACCGCGTTGTGGAGGGCACGGCTGTGACCGACCCGATTGGAAGGAACACTGGAACTGGTCGGACAACCGCTCATAACACTCACGTTGGTGGTGGTGGTGCCACCGGGTACGGAACCGGCGGGGGATATACTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009791 GO:0010035 GO:0010154 GO:0022414 GO:0030246 GO:0031210 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0044424 GO:0044444 GO:0044464 GO:0048030 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0050997 GO:0061458 GO:0070405 GO:0070492 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_1

Protein Analysis

158

Amino Acids

16.18

Weight (kDa)

9.43

Isoelectric Point (pI)

17.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_1	PF03760	1 - 71	7.3e-24	Late embryogenesis abundant (LEA) group 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06760
fragaria_vesca	FvH4_6g22410
malus_domestica	MD12G1057800.v1.1
prunus_persica	Prupe.7G076400_v2.0.a1 Prupe.7G076400_v2.0.a1
pyrus_communis	pycom12g05130 pycom14g04720
rosa_chinensis	RchiOBHm_Chr3g0479771
rosa_laevigata	RLG00000023541
rosa_multiflora	Rmu_sc0004329.1_g000013
rosa_roxburghii	Rroxscaffold_6G00401990
rosa_rugosa	Rorug03G0178400
rosa_samantha	Rh3AG229100 Rh3BG262300 Rh3CG259000 Rh3DG255300
rosa_wichuraiana	Rw0G015300 Rw3G020610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	437
AccBSI	CCGCTC	1 cut(s)	410
AccII	CGCG	3 cut(s)	187, 200, 345
AciI	CCGC	6 cut(s)	89, 200, 215, 343, 408, 459
AcoI	YGGCCR	2 cut(s)	201, 249
AfaI	GTAC	1 cut(s)	449
AfiI	CCNNNNNNNGG	2 cut(s)	320, 349
AflIII	ACRYGT	1 cut(s)	185
AgeI	ACCGGT	1 cut(s)	230
AjnI	CCWGG	1 cut(s)	313
AleI	CACNNNNGTG	2 cut(s)	362, 426
AluBI	AGCT	4 cut(s)	23, 38, 71, 164
AluI	AGCT	4 cut(s)	23, 38, 71, 164
Alw26I	GTCTC	1 cut(s)	102
AlwNI	CAGNNNCTG	1 cut(s)	41
AoxI	GGCC	2 cut(s)	201, 249
ApeKI	GCWGC	1 cut(s)	35
AsiGI	ACCGGT	1 cut(s)	230
AsuC2I	CCSGG	1 cut(s)	445
AsuII	TTCGAA	1 cut(s)	26
BaeGI	GKGCMC	1 cut(s)	359
BanI	GGYRCC	1 cut(s)	437
BauI	CACGAG	1 cut(s)	105
BbsI	GAAGAC	1 cut(s)	107
BbvI	GCAGC	1 cut(s)	47
BccI	CCATC	1 cut(s)	121
BceAI	ACGGC	3 cut(s)	264, 298, 375
BciT130I	CCWGG	1 cut(s)	315
BcnI	CCSGG	1 cut(s)	445
BcoDI	GTCTC	1 cut(s)	102
BisI	GCNGC	3 cut(s)	36, 201, 216
BlsI	GCNGC	3 cut(s)	37, 202, 217
Bme1390I	CCNGG	2 cut(s)	315, 445
BmiI	GGNNCC	4 cut(s)	223, 229, 439, 454
BmrFI	CCNGG	2 cut(s)	315, 445
BmrI	ACTGGG	1 cut(s)	297
BmsI	GCATC	1 cut(s)	159
BmuI	ACTGGG	1 cut(s)	297
BpiI	GAAGAC	1 cut(s)	107
BpmI	CTGGAG	1 cut(s)	240
Bpu14I	TTCGAA	1 cut(s)	26
BpuMI	CCSGG	1 cut(s)	445
BsaI	GGTCTC	1 cut(s)	102
BsaJI	CCNNGG	1 cut(s)	75
BsaWI	WCCGGW	1 cut(s)	230
Bsc4I	CCNNNNNNNGG	2 cut(s)	320, 349
Bse118I	RCCGGY	2 cut(s)	230, 455
Bse1I	ACTGG	5 cut(s)	271, 292, 394, 400, 475
BseBI	CCWGG	1 cut(s)	315
BseDI	CCNNGG	1 cut(s)	75
BseLI	CCNNNNNNNGG	2 cut(s)	320, 349
BseMII	CTCAG	1 cut(s)	156
BseNI	ACTGG	5 cut(s)	271, 292, 394, 400, 475
BseSI	GKGCMC	1 cut(s)	359
BseXI	GCAGC	1 cut(s)	47
Bsh1236I	CGCG	3 cut(s)	187, 200, 345
Bsh1285I	CGRYCG	1 cut(s)	343
BshFI	GGCC	2 cut(s)	203, 251
BshNI	GGYRCC	1 cut(s)	437
BshTI	ACCGGT	1 cut(s)	230
BsiEI	CGRYCG	1 cut(s)	343
BsiSI	CCGG	4 cut(s)	225, 231, 444, 456
BslFI	GGGAC	3 cut(s)	259, 304, 342
BslI	CCNNNNNNNGG	2 cut(s)	320, 349
BsmAI	GTCTC	1 cut(s)	102
BsmFI	GGGAC	3 cut(s)	259, 304, 342
BsnI	GGCC	2 cut(s)	203, 251
Bso31I	GGTCTC	1 cut(s)	102
Bsp119I	TTCGAA	1 cut(s)	26
Bsp1286I	GDGCHC	1 cut(s)	359
Bsp143I	GATC	1 cut(s)	153
BspACI	CCGC	6 cut(s)	89, 200, 215, 343, 408, 459
BspANI	GGCC	2 cut(s)	203, 251
BspCNI	CTCAG	1 cut(s)	157
BspFNI	CGCG	3 cut(s)	187, 200, 345
BspLI	GGNNCC	4 cut(s)	223, 229, 439, 454
BspT104I	TTCGAA	1 cut(s)	26
BspT107I	GGYRCC	1 cut(s)	437
BspTNI	GGTCTC	1 cut(s)	102
BsrBI	CCGCTC	1 cut(s)	410
BsrFI	RCCGGY	2 cut(s)	230, 455
BsrI	ACTGG	5 cut(s)	271, 292, 394, 400, 475
BssAI	RCCGGY	2 cut(s)	230, 455
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	1 cut(s)	153
BssSI	CACGAG	1 cut(s)	105
BssT1I	CCWWGG	1 cut(s)	75
Bst2BI	CACGAG	1 cut(s)	105
Bst2UI	CCWGG	1 cut(s)	315
Bst6I	CTCTTC	1 cut(s)	170
BstAPI	GCANNNNNTGC	1 cut(s)	41
BstBI	TTCGAA	1 cut(s)	26
BstDEI	CTNAG	1 cut(s)	165
BstFNI	CGCG	3 cut(s)	187, 200, 345
BstKTI	GATC	1 cut(s)	156
BstMAI	GTCTC	1 cut(s)	102
BstMBI	GATC	1 cut(s)	153
BstMCI	CGRYCG	1 cut(s)	343
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 221
BstNI	CCWGG	1 cut(s)	315
BstSCI	CCNGG	2 cut(s)	313, 443
BstSLI	GKGCMC	1 cut(s)	359
BstUI	CGCG	3 cut(s)	187, 200, 345
BstV1I	GCAGC	1 cut(s)	47
BstV2I	GAAGAC	1 cut(s)	107
BsuRI	GGCC	2 cut(s)	203, 251
BtsIMutI	CAGTG	3 cut(s)	264, 285, 387
CaiI	CAGNNNCTG	1 cut(s)	41
Cfr10I	RCCGGY	2 cut(s)	230, 455
CseI	GACGC	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	448
CspAI	ACCGGT	1 cut(s)	230
CviAII	CATG	2 cut(s)	55, 205
CviQI	GTAC	1 cut(s)	448
DdeI	CTNAG	1 cut(s)	165
DpnI	GATC	1 cut(s)	155
DpnII	GATC	1 cut(s)	153
EaeI	YGGCCR	2 cut(s)	201, 249
Eam1104I	CTCTTC	1 cut(s)	170
EarI	CTCTTC	1 cut(s)	170
EciI	GGCGGA	1 cut(s)	104
Eco130I	CCWWGG	1 cut(s)	75
Eco31I	GGTCTC	1 cut(s)	102
EcoRII	CCWGG	1 cut(s)	313
EcoT14I	CCWWGG	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	2 cut(s)	58, 208
FaiI	YATR	4 cut(s)	56, 206, 414, 468
FaqI	GGGAC	3 cut(s)	259, 304, 342
FatI	CATG	2 cut(s)	54, 204
FauI	CCCGC	1 cut(s)	452
Fnu4HI	GCNGC	3 cut(s)	36, 201, 216
Fsp4HI	GCNGC	3 cut(s)	36, 201, 216
GluI	GCNGC	3 cut(s)	36, 201, 216
GsuI	CTGGAG	1 cut(s)	240
HaeIII	GGCC	2 cut(s)	203, 251
HapII	CCGG	4 cut(s)	225, 231, 444, 456
HgaI	GACGC	1 cut(s)	176
Hin1II	CATG	2 cut(s)	58, 208
HpaII	CCGG	4 cut(s)	225, 231, 444, 456
Hpy188I	TCNGA	4 cut(s)	120, 278, 300, 402
HpyAV	CCTTC	1 cut(s)	375
HpyCH4IV	ACGT	1 cut(s)	423
HpyCH4V	TGCA	4 cut(s)	4, 35, 44, 172
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 221
HpyF3I	CTNAG	1 cut(s)	165
HpySE526I	ACGT	1 cut(s)	423
Hsp92II	CATG	2 cut(s)	58, 208
Kzo9I	GATC	1 cut(s)	153
LmnI	GCTCC	1 cut(s)	221
Lsp1109I	GCAGC	1 cut(s)	47
LweI	GCATC	1 cut(s)	159
MaeII	ACGT	1 cut(s)	423
MaeIII	GTNAC	2 cut(s)	317, 364
MalI	GATC	1 cut(s)	155
MbiI	CCGCTC	1 cut(s)	410
MboI	GATC	1 cut(s)	153
MboII	GAAGA	4 cut(s)	106, 112, 158, 187
MhlI	GDGCHC	1 cut(s)	359
MluI	ACGCGT	1 cut(s)	185
MmeI	TCCRAC	2 cut(s)	256, 380
MnlI	CCTC	2 cut(s)	73, 346
MseI	TTAA	1 cut(s)	141
MslI	CAYNNNNRTG	2 cut(s)	362, 426
MspI	CCGG	4 cut(s)	225, 231, 444, 456
MspR9I	CCNGG	2 cut(s)	315, 445
MvaI	CCWGG	1 cut(s)	315
MvnI	CGCG	3 cut(s)	187, 200, 345
MwoI	GCNNNNNNNGC	2 cut(s)	41, 221
NciI	CCSGG	1 cut(s)	445
NdeII	GATC	1 cut(s)	153
NlaIII	CATG	2 cut(s)	58, 208
NlaIV	GGNNCC	4 cut(s)	223, 229, 439, 454
NmuCI	GTSAC	2 cut(s)	317, 364
NspV	TTCGAA	1 cut(s)	26
OliI	CACNNNNGTG	2 cut(s)	362, 426
PinAI	ACCGGT	1 cut(s)	230
PkrI	GCNGC	3 cut(s)	37, 202, 217
Psp6I	CCWGG	1 cut(s)	313
PspGI	CCWGG	1 cut(s)	313
PspN4I	GGNNCC	4 cut(s)	223, 229, 439, 454
PstNI	CAGNNNCTG	1 cut(s)	41
RsaI	GTAC	1 cut(s)	449
RsaNI	GTAC	1 cut(s)	448
RseI	CAYNNNNRTG	2 cut(s)	362, 426
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	3 cut(s)	36, 201, 216
Sau3AI	GATC	1 cut(s)	153
ScrFI	CCNGG	2 cut(s)	315, 445
SduI	GDGCHC	1 cut(s)	359
SetI	ASST	8 cut(s)	25, 40, 73, 77, 141, 166, 241, 426
SfaNI	GCATC	1 cut(s)	159
SfuI	TTCGAA	1 cut(s)	26
SmiMI	CAYNNNNRTG	2 cut(s)	362, 426
SsiI	CCGC	6 cut(s)	89, 200, 215, 343, 408, 459
SspI	AATATT	1 cut(s)	31
StyD4I	CCNGG	2 cut(s)	313, 443
StyI	CCWWGG	1 cut(s)	75
TaiI	ACGT	1 cut(s)	426
TaqI	TCGA	3 cut(s)	8, 26, 260
TaqII	GACCGA	2 cut(s)	353, 383
TauI	GCSGC	2 cut(s)	203, 218
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TscAI	CASTG	3 cut(s)	271, 292, 394
TseFI	GTSAC	2 cut(s)	317, 364
TseI	GCWGC	1 cut(s)	35
Tsp45I	GTSAC	2 cut(s)	317, 364
TspDTI	ATGAA	3 cut(s)	26, 113, 221
TspGWI	ACGGA	2 cut(s)	336, 465
TspRI	CASTG	3 cut(s)	271, 292, 394
XcmI	CCANNNNNNNNNTGG	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.