Rroxscaffold_6G00401990

18 kDa seed maturation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0013027
Physical Location & Seq
Reverse (-)
24387541 .. 24388438
898 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00401990.1

Sequence Viewer

Length: 507 bp
ATGCAGTCAATCAAGGAAGCCGCGGCCAACGTAGCTGCCTCTGCCAAATCTGGCATGGAGAAGACCAAGGCCACCATGCAGGAGAAGATGGAGAAGATGAAGGCACAGGACCCGATTCAAAAGGACATGGCAACTCAAAAGAAAGAAGGGCGGATTGCCGAGGCTGAGCAGCACAAGCGTGAGGCCATGGATCACAACACCGCCGCTAAACATGGAGCAGCTCCGGCTGGATCCACAGGCTACGGCACTGGGCCGACGGGATACAGCACCAGCGGGGCTGGAACAGCCACATATTCAACCACCGGGGCTACTGGGCAGCAAACCGGGTTCAATCAGATGTCCGCGCTGCCCGGACATGGGACCGGGGAACCCGCTGGCCAGGTGGTTGAGGGTGTTGCCACCGCACATCCGACCGGAGCCAACACTGGCACCGGGAGGACTACGGCCCATAACACCCATGTGGGTGGTAATGCCCCCGGCTATGGGACTGGCGGGACTTATAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005543 GO:0008289 GO:0030246 GO:0031210 GO:0043167 GO:0043168 GO:0043169 GO:0048030 GO:0050997 GO:0070405 GO:0070492
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_1

Protein Analysis

168

Amino Acids

16.9

Weight (kDa)

8.81

Isoelectric Point (pI)

17.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_1 PF03760 1 - 70 7.9e-20 Late embryogenesis abundant (LEA) group 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013027)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G06760
fragaria_vesca FvH4_6g22410
malus_domestica MD12G1057800.v1.1
prunus_persica Prupe.7G076400_v2.0.a1 Prupe.7G076400_v2.0.a1
pyrus_communis pycom12g05130 pycom14g04720
rosa_chinensis RchiOBHm_Chr3g0479771
rosa_laevigata RLG00000023541
rosa_multiflora Rmu_sc0004329.1_g000013
rosa_roxburghii Rroxscaffold_6G00401990
rosa_rugosa Rorug03G0178400
rosa_samantha Rh3AG229100 Rh3BG262300 Rh3CG259000 Rh3DG255300
rosa_wichuraiana Rw0G015300 Rw3G020610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 428
AccII CGCG 2 cut(s) 23, 344
AclWI GGATC 3 cut(s) 198, 225, 238
AcoI YGGCCR 2 cut(s) 24, 376
AfiI CCNNNNNNNGG 4 cut(s) 356, 357, 482, 483
AgsI TTSAA 3 cut(s) 119, 297, 331
AjnI CCWGG 1 cut(s) 378
AleI CACNNNNGTG 2 cut(s) 177, 458
AluBI AGCT 2 cut(s) 35, 221
AluI AGCT 2 cut(s) 35, 221
AlwI GGATC 3 cut(s) 198, 225, 238
AoxI GGCC 6 cut(s) 24, 69, 183, 251, 376, 444
ApeKI GCWGC 5 cut(s) 35, 169, 218, 316, 346
AspLEI GCGC 1 cut(s) 346
AspS9I GGNCC 4 cut(s) 109, 251, 360, 445
AsuC2I CCSGG 6 cut(s) 304, 325, 351, 364, 433, 477
AvaII GGWCC 2 cut(s) 109, 360
BalI TGGCCA 1 cut(s) 378
BamHI GGATCC 1 cut(s) 230
BanI GGYRCC 1 cut(s) 428
BbsI GAAGAC 1 cut(s) 68
BbvI GCAGC 5 cut(s) 22, 181, 230, 328, 333
BccI CCATC 1 cut(s) 82
BceAI ACGGC 2 cut(s) 259, 459
BciT130I CCWGG 1 cut(s) 380
BciVI GTATCC 1 cut(s) 254
BcnI CCSGG 6 cut(s) 304, 325, 351, 364, 433, 477
BfuI GTATCC 1 cut(s) 254
BisI GCNGC 8 cut(s) 21, 24, 36, 170, 204, 219, 317, 347
BlpI GCTNAGC 1 cut(s) 165
BlsI GCNGC 8 cut(s) 22, 25, 37, 171, 205, 220, 318, 348
Bme1390I CCNGG 7 cut(s) 304, 325, 351, 364, 380, 433, 477
Bme18I GGWCC 2 cut(s) 109, 360
BmgT120I GGNCC 4 cut(s) 109, 251, 360, 445
BmiI GGNNCC 6 cut(s) 111, 232, 361, 369, 418, 430
BmrFI CCNGG 7 cut(s) 304, 325, 351, 364, 380, 433, 477
BmrI ACTGGG 2 cut(s) 258, 321
BmuI ACTGGG 2 cut(s) 258, 321
BpiI GAAGAC 1 cut(s) 68
Bpu1102I GCTNAGC 1 cut(s) 165
BpuMI CCSGG 6 cut(s) 304, 325, 351, 364, 433, 477
BsaJI CCNNGG 7 cut(s) 21, 66, 159, 186, 303, 363, 475
BsaWI WCCGGW 1 cut(s) 413
Bsc4I CCNNNNNNNGG 4 cut(s) 356, 357, 482, 483
Bse1I ACTGG 4 cut(s) 253, 316, 430, 493
BseBI CCWGG 1 cut(s) 380
BseDI CCNNGG 7 cut(s) 21, 66, 159, 186, 303, 363, 475
BseGI GGATG 1 cut(s) 406
BseLI CCNNNNNNNGG 4 cut(s) 356, 357, 482, 483
BseMII CTCAG 1 cut(s) 156
BseNI ACTGG 4 cut(s) 253, 316, 430, 493
BseXI GCAGC 5 cut(s) 22, 181, 230, 328, 333
Bsh1236I CGCG 2 cut(s) 23, 344
Bsh1285I CGRYCG 1 cut(s) 414
BshFI GGCC 6 cut(s) 26, 71, 185, 253, 378, 446
BshNI GGYRCC 1 cut(s) 428
BsiEI CGRYCG 1 cut(s) 414
BsiSI CCGG 8 cut(s) 224, 303, 324, 351, 363, 414, 432, 477
BslFI GGGAC 2 cut(s) 373, 499
BslI CCNNNNNNNGG 4 cut(s) 356, 357, 482, 483
BsmFI GGGAC 2 cut(s) 373, 499
BsnI GGCC 6 cut(s) 26, 71, 185, 253, 378, 446
Bsp143I GATC 2 cut(s) 190, 230
Bsp1720I GCTNAGC 1 cut(s) 165
Bsp19I CCATGG 1 cut(s) 186
BspANI GGCC 6 cut(s) 26, 71, 185, 253, 378, 446
BspCNI CTCAG 1 cut(s) 157
BspFNI CGCG 2 cut(s) 23, 344
BspLI GGNNCC 6 cut(s) 111, 232, 361, 369, 418, 430
BspPI GGATC 3 cut(s) 198, 225, 238
BspT107I GGYRCC 1 cut(s) 428
BsrI ACTGG 4 cut(s) 253, 316, 430, 493
BssECI CCNNGG 7 cut(s) 21, 66, 159, 186, 303, 363, 475
BssMI GATC 2 cut(s) 190, 230
BssT1I CCWWGG 2 cut(s) 66, 186
Bst2UI CCWGG 1 cut(s) 380
BstC8I GCNNGC 1 cut(s) 376
BstDEI CTNAG 1 cut(s) 165
BstDSI CCRYGG 2 cut(s) 21, 186
BstF5I GGATG 1 cut(s) 406
BstFNI CGCG 2 cut(s) 23, 344
BstHHI GCGC 1 cut(s) 346
BstKTI GATC 2 cut(s) 193, 233
BstMBI GATC 2 cut(s) 190, 230
BstMCI CGRYCG 1 cut(s) 414
BstMWI GCNNNNNNNGC 5 cut(s) 32, 41, 175, 224, 284
BstNI CCWGG 1 cut(s) 380
BstSCI CCNGG 7 cut(s) 302, 323, 349, 362, 378, 431, 475
BstUI CGCG 2 cut(s) 23, 344
BstV1I GCAGC 5 cut(s) 22, 181, 230, 328, 333
BstV2I GAAGAC 1 cut(s) 68
BstX2I RGATCY 1 cut(s) 230
BstXI CCANNNNNNTGG 1 cut(s) 464
BstYI RGATCY 1 cut(s) 230
BsuI GTATCC 1 cut(s) 254
BsuRI GGCC 6 cut(s) 26, 71, 185, 253, 378, 446
BtgI CCRYGG 2 cut(s) 21, 186
BtsCI GGATG 1 cut(s) 406
BtsIMutI CAGTG 2 cut(s) 246, 423
Cac8I GCNNGC 1 cut(s) 376
CfoI GCGC 1 cut(s) 346
Cfr13I GGNCC 4 cut(s) 109, 251, 360, 445
Cfr42I CCGCGG 1 cut(s) 24
CviAII CATG 7 cut(s) 55, 76, 127, 187, 212, 356, 458
DdeI CTNAG 1 cut(s) 165
DpnI GATC 2 cut(s) 192, 232
DpnII GATC 2 cut(s) 190, 230
EaeI YGGCCR 2 cut(s) 24, 376
EciI GGCGGA 1 cut(s) 166
Eco130I CCWWGG 2 cut(s) 66, 186
Eco47I GGWCC 2 cut(s) 109, 360
EcoO109I RGGNCCY 1 cut(s) 109
EcoRII CCWGG 1 cut(s) 378
EcoT14I CCWWGG 2 cut(s) 66, 186
ErhI CCWWGG 2 cut(s) 66, 186
FaeI CATG 7 cut(s) 58, 79, 130, 190, 215, 359, 461
FaqI GGGAC 2 cut(s) 373, 499
FatI CATG 7 cut(s) 54, 75, 126, 186, 211, 355, 457
FauI CCCGC 3 cut(s) 266, 379, 485
Fnu4HI GCNGC 8 cut(s) 21, 24, 36, 170, 204, 219, 317, 347
FokI GGATG 1 cut(s) 393
Fsp4HI GCNGC 8 cut(s) 21, 24, 36, 170, 204, 219, 317, 347
GlaI GCGC 1 cut(s) 345
GluI GCNGC 8 cut(s) 21, 24, 36, 170, 204, 219, 317, 347
HaeIII GGCC 6 cut(s) 26, 71, 185, 253, 378, 446
HapII CCGG 8 cut(s) 224, 303, 324, 351, 363, 414, 432, 477
HhaI GCGC 1 cut(s) 346
Hin1II CATG 7 cut(s) 58, 79, 130, 190, 215, 359, 461
Hin6I GCGC 1 cut(s) 344
HinP1I GCGC 1 cut(s) 344
HinfI GANTC 1 cut(s) 115
HpaII CCGG 8 cut(s) 224, 303, 324, 351, 363, 414, 432, 477
Hpy188I TCNGA 2 cut(s) 336, 411
Hpy99I CGWCG 1 cut(s) 259
HpyAV CCTTC 2 cut(s) 94, 140
HpyCH4IV ACGT 1 cut(s) 30
HpyCH4V TGCA 2 cut(s) 4, 79
HpyF10VI GCNNNNNNNGC 5 cut(s) 32, 41, 175, 224, 284
HpyF3I CTNAG 1 cut(s) 165
HpySE526I ACGT 1 cut(s) 30
Hsp92II CATG 7 cut(s) 58, 79, 130, 190, 215, 359, 461
HspAI GCGC 1 cut(s) 344
KspI CCGCGG 1 cut(s) 24
Kzo9I GATC 2 cut(s) 190, 230
LmnI GCTCC 3 cut(s) 215, 226, 416
Lsp1109I GCAGC 5 cut(s) 22, 181, 230, 328, 333
MaeII ACGT 1 cut(s) 30
MalI GATC 2 cut(s) 192, 232
MboI GATC 2 cut(s) 190, 230
MboII GAAGA 3 cut(s) 73, 97, 106
MflI RGATCY 1 cut(s) 230
MlsI TGGCCA 1 cut(s) 378
MluNI TGGCCA 1 cut(s) 378
MmeI TCCRAC 1 cut(s) 434
MnlI CCTC 5 cut(s) 49, 154, 175, 382, 429
Mox20I TGGCCA 1 cut(s) 378
MscI TGGCCA 1 cut(s) 378
MslI CAYNNNNRTG 3 cut(s) 177, 458, 462
Msp20I TGGCCA 1 cut(s) 378
MspA1I CMGCKG 3 cut(s) 23, 273, 374
MspI CCGG 8 cut(s) 224, 303, 324, 351, 363, 414, 432, 477
MspR9I CCNGG 7 cut(s) 304, 325, 351, 364, 380, 433, 477
MvaI CCWGG 1 cut(s) 380
MvnI CGCG 2 cut(s) 23, 344
MwoI GCNNNNNNNGC 5 cut(s) 32, 41, 175, 224, 284
NciI CCSGG 6 cut(s) 304, 325, 351, 364, 433, 477
NcoI CCATGG 1 cut(s) 186
NdeII GATC 2 cut(s) 190, 230
NlaIII CATG 7 cut(s) 58, 79, 130, 190, 215, 359, 461
NlaIV GGNNCC 6 cut(s) 111, 232, 361, 369, 418, 430
NmeAIII GCCGAG 1 cut(s) 184
OliI CACNNNNGTG 2 cut(s) 177, 458
PfeI GAWTC 1 cut(s) 115
PkrI GCNGC 8 cut(s) 22, 25, 37, 171, 205, 220, 318, 348
PpuMI RGGWCCY 1 cut(s) 109
Psp5II RGGWCCY 1 cut(s) 109
Psp6I CCWGG 1 cut(s) 378
PspGI CCWGG 1 cut(s) 378
PspN4I GGNNCC 6 cut(s) 111, 232, 361, 369, 418, 430
PspPI GGNCC 4 cut(s) 109, 251, 360, 445
PspPPI RGGWCCY 1 cut(s) 109
PsuI RGATCY 1 cut(s) 230
RseI CAYNNNNRTG 3 cut(s) 177, 458, 462
SacII CCGCGG 1 cut(s) 24
SatI GCNGC 8 cut(s) 21, 24, 36, 170, 204, 219, 317, 347
Sau3AI GATC 2 cut(s) 190, 230
Sau96I GGNCC 4 cut(s) 109, 251, 360, 445
ScrFI CCNGG 7 cut(s) 304, 325, 351, 364, 380, 433, 477
SetI ASST 4 cut(s) 33, 37, 223, 384
Sfr303I CCGCGG 1 cut(s) 24
SgrBI CCGCGG 1 cut(s) 24
SinI GGWCC 2 cut(s) 109, 360
SmiMI CAYNNNNRTG 3 cut(s) 177, 458, 462
StyD4I CCNGG 7 cut(s) 302, 323, 349, 362, 378, 431, 475
StyI CCWWGG 2 cut(s) 66, 186
TaiI ACGT 1 cut(s) 33
TauI GCSGC 3 cut(s) 23, 26, 206
TfiI GAWTC 1 cut(s) 115
TscAI CASTG 2 cut(s) 253, 430
TseI GCWGC 5 cut(s) 35, 169, 218, 316, 346
TspDTI ATGAA 1 cut(s) 113
TspRI CASTG 2 cut(s) 253, 430
VpaK11BI GGWCC 2 cut(s) 109, 360
XcmI CCANNNNNNNNNTGG 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.