Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002823

Physical Location & Seq

Genomic Coordinates Forward (+)

2132350 .. 2133587

Gene Structure 1238 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G06860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGATAAGACAGCGACATTGTGTCTCTTGTTCTTGTTCACATTCCTCACGACCTGTTTGTCTAAAGATCTCTGTAACCAAAATGACAAAAACACCCTCCTCAAGATCAAGAAATCTCTAAACAACCCTTATCACCTCGCTTCATGGGACCCTCAAACCGACTGTTGCTCCTGGTACTGCCTTGAGTGCGGCGACGCCACCGTTAACCACCGTGTTACCGCCTTAACCATATTCTCCGGCCAGATCTCCGGTCAGATCCCGGCTGAAGTCGGTGACTTGCCGTATCTTGAGACCCTTGTCTTCCGCAAACTCTCTAACCTCACCGGTACAATCCAACCCACCATCGCCAAACTCAAGAACCTCCGAATGCTCAGGCTCAGCTGGACGAATCTGACAGGTCCAATTCCTGACTTTATAAGTCAGCTCAAGAATCTCGAGTTCTTAGAACTTTCCTTCAATGATCTCTCTGGTTCCATTCCAAGTTCTCTCTCTACGTTACCTAAAATCTTGGCTCTTGAACTTAGCAGGAACAAACTTACAGGTTCCATACCAGAGTCATTTGGGTCGTTTCCAGGAACAGTCCCTGACCTTCGCCTATCACATAACCAGCTCTCCGGTCCAATACCCAAATCATTAGGCAACATCGACTTTAACCGGATCGATTTATCCCGCAACAAGCTCCAAGGTGATGCTTCGATGTTGTTTGGTTCCAACAAAACAACCTGGTCTATTGACTTATCAAGAAACATGTTCCAGTTCGATATCTCAAAGGTTGATATCCCTAAAACACTTGGTATCTTGGACTTGAACCACAATGGGATCACTGGGAATATTCCGGTGCAGTGGACTGAAGCTCCTCTTCAGTTCTTCAATGTTAGCTACAACAAACTGTGTGGACACATCCCAACTGGAGGGAAACTTCAGACATTTGATTCTTATTCCTATTTTCACAACAAGTGTTTGTGTGGTGCTCCTCTTGAAATTTGCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005911 GO:0008150 GO:0009505 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0030234 GO:0030312 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0050790 GO:0055044 GO:0065007 GO:0065009 GO:0071944 GO:0090353 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

330

Amino Acids

36.69

Weight (kDa)

8.24

Isoelectric Point (pI)

31.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	27 - 63	2.4e-11	Leucine rich repeat N-terminal domain
LRR_14	PF23598	84 - 179	2e-07	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06860 AT5G06870
fragaria_vesca	FvH4_6g22790
malus_domestica	MD14G1062500.v1.1 MD14G1062600.v1.1
prunus_persica	Prupe.7G072600_v2.0.a1 Prupe.7G072700_v2.0.a1 Prupe.7G072700_v2.0.a1
pyrus_communis	pycom14g05040
rosa_chinensis	RchiOBHm_Chr3g0480401 RchiOBHm_Chr3g0480411
rosa_laevigata	RLG00000023478 RLG00000023480 RLG00000023484 RLG00000023486
rosa_multiflora	Rmu_sc0002205.1_g000006 Rmu_sc0002205.1_g000018 Rmu_sc0002205.1_g000023 Rmu_sc0003742.1_g000007 Rmu_sc0006555.1_g000004 Rmu_sc0010988.1_g000004
rosa_roxburghii	Rroxscaffold_6G00401380 Rroxscaffold_6G00401390 Rroxscaffold_6G00401400
rosa_rugosa	Rorug03G0183600.1 Rorug03G0183700
rosa_samantha	Rh3AG235100 Rh3AG235200 Rh3BG267800 Rh3BG268000 Rh3BG268100 Rh3CG265000 Rh3CG265200 Rh3DG260900 Rh3DG261100 Rh5BG519600 Rh5CG543500
rosa_wichuraiana	Rw3G021110 Rw5G046270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	416
AasI	GACNNNNNNGTC	1 cut(s)	58
AciI	CCGC	4 cut(s)	189, 219, 304, 670
AclWI	GGATC	3 cut(s)	250, 665, 827
AcoI	YGGCCR	1 cut(s)	238
AcsI	RAATTY	1 cut(s)	981
AcuI	CTGAAG	4 cut(s)	285, 845, 870, 905
AcyI	GRCGYC	1 cut(s)	195
AfaI	GTAC	2 cut(s)	176, 328
AfiI	CCNNNNNNNGG	1 cut(s)	911
AflIII	ACRYGT	1 cut(s)	747
AgeI	ACCGGT	1 cut(s)	323
AgsI	TTSAA	5 cut(s)	457, 518, 808, 871, 980
AhdI	GACNNNNNGTC	1 cut(s)	21
AjnI	CCWGG	3 cut(s)	170, 571, 722
AluBI	AGCT	6 cut(s)	381, 424, 610, 679, 854, 879
AluI	AGCT	6 cut(s)	381, 424, 610, 679, 854, 879
Alw21I	GWGCWC	1 cut(s)	973
Alw26I	GTCTC	2 cut(s)	29, 284
AlwI	GGATC	3 cut(s)	250, 665, 827
AlwNI	CAGNNNCTG	1 cut(s)	584
Ama87I	CYCGRG	1 cut(s)	434
AoxI	GGCC	1 cut(s)	238
ApoI	RAATTY	1 cut(s)	981
AsiGI	ACCGGT	1 cut(s)	323
AspS9I	GGNCC	3 cut(s)	148, 398, 617
AsuC2I	CCSGG	1 cut(s)	260
AsuHPI	GGTGA	4 cut(s)	125, 284, 313, 698
AvaI	CYCGRG	1 cut(s)	434
AvaII	GGWCC	3 cut(s)	148, 398, 617
BbsI	GAAGAC	1 cut(s)	292
Bbv12I	GWGCWC	1 cut(s)	973
BccI	CCATC	1 cut(s)	350
BceAI	ACGGC	1 cut(s)	265
BciT130I	CCWGG	3 cut(s)	172, 573, 724
BcnI	CCSGG	1 cut(s)	260
BcoDI	GTCTC	2 cut(s)	29, 284
BglII	AGATCT	2 cut(s)	67, 243
BisI	GCNGC	1 cut(s)	190
BlpI	GCTNAGC	1 cut(s)	377
BlsI	GCNGC	1 cut(s)	191
Bme1390I	CCNGG	4 cut(s)	172, 260, 573, 724
Bme18I	GGWCC	3 cut(s)	148, 398, 617
BmeRI	GACNNNNNGTC	1 cut(s)	21
BmeT110I	CYCGRG	1 cut(s)	434
BmgT120I	GGNCC	3 cut(s)	148, 398, 617
BmiI	GGNNCC	5 cut(s)	149, 150, 472, 544, 709
BmrFI	CCNGG	4 cut(s)	172, 260, 573, 724
BmrI	ACTGGG	1 cut(s)	834
BmsI	GCATC	1 cut(s)	679
BmuI	ACTGGG	1 cut(s)	834
BoxI	GACNNNNGTC	1 cut(s)	296
BpiI	GAAGAC	1 cut(s)	292
BpmI	CTGGAG	1 cut(s)	930
Bpu10I	CCTNAGC	1 cut(s)	371
Bpu1102I	GCTNAGC	1 cut(s)	377
BpuEI	CTTGAG	5 cut(s)	86, 203, 308, 338, 410
BpuMI	CCSGG	1 cut(s)	260
Bsa29I	ATCGAT	1 cut(s)	660
BsaHI	GRCGYC	1 cut(s)	195
BsaI	GGTCTC	1 cut(s)	284
BsaJI	CCNNGG	1 cut(s)	682
BsaWI	WCCGGW	5 cut(s)	248, 323, 614, 654, 835
BsaXI	ACNNNNNCTCC	6 cut(s)	152, 182, 596, 626, 838, 868
Bsc4I	CCNNNNNNNGG	1 cut(s)	911
Bse118I	RCCGGY	1 cut(s)	323
Bse1I	ACTGG	3 cut(s)	754, 829, 913
BseBI	CCWGG	3 cut(s)	172, 573, 724
BseCI	ATCGAT	1 cut(s)	660
BseDI	CCNNGG	1 cut(s)	682
BseGI	GGATG	1 cut(s)	900
BseLI	CCNNNNNNNGG	1 cut(s)	911
BseMII	CTCAG	2 cut(s)	385, 391
BseNI	ACTGG	3 cut(s)	754, 829, 913
BseRI	GAGGAG	3 cut(s)	89, 846, 963
BsgI	GTGCAG	1 cut(s)	860
BshFI	GGCC	1 cut(s)	240
BshTI	ACCGGT	1 cut(s)	323
BshVI	ATCGAT	1 cut(s)	660
BsiHKAI	GWGCWC	1 cut(s)	973
BsiHKCI	CYCGRG	1 cut(s)	434
BsiSI	CCGG	7 cut(s)	237, 249, 260, 324, 615, 655, 836
BslFI	GGGAC	2 cut(s)	161, 566
BslI	CCNNNNNNNGG	1 cut(s)	911
BsmAI	GTCTC	2 cut(s)	29, 284
BsmFI	GGGAC	2 cut(s)	161, 566
BsmI	GAATGC	1 cut(s)	372
BsnI	GGCC	1 cut(s)	240
Bso31I	GGTCTC	1 cut(s)	284
BsoBI	CYCGRG	1 cut(s)	434
Bsp1286I	GDGCHC	1 cut(s)	973
Bsp143I	GATC	7 cut(s)	67, 105, 243, 255, 460, 657, 819
Bsp1720I	GCTNAGC	1 cut(s)	377
BspACI	CCGC	4 cut(s)	189, 219, 304, 670
BspANI	GGCC	1 cut(s)	240
BspCNI	CTCAG	2 cut(s)	384, 390
BspDI	ATCGAT	1 cut(s)	660
BspLI	GGNNCC	5 cut(s)	149, 150, 472, 544, 709
BspPI	GGATC	3 cut(s)	250, 665, 827
BspTNI	GGTCTC	1 cut(s)	284
BsrFI	RCCGGY	1 cut(s)	323
BsrI	ACTGG	3 cut(s)	754, 829, 913
BssAI	RCCGGY	1 cut(s)	323
BssECI	CCNNGG	1 cut(s)	682
BssMI	GATC	7 cut(s)	67, 105, 243, 255, 460, 657, 819
BssNI	GRCGYC	1 cut(s)	195
BssT1I	CCWWGG	1 cut(s)	682
Bst2UI	CCWGG	3 cut(s)	172, 573, 724
Bst4CI	ACNGT	5 cut(s)	164, 202, 212, 580, 891
Bst6I	CTCTTC	1 cut(s)	864
BstACI	GRCGYC	1 cut(s)	195
BstDEI	CTNAG	4 cut(s)	371, 377, 442, 521
BstF5I	GGATG	1 cut(s)	900
BstKTI	GATC	7 cut(s)	70, 108, 246, 258, 463, 660, 822
BstMAI	GTCTC	2 cut(s)	29, 284
BstMBI	GATC	7 cut(s)	67, 105, 243, 255, 460, 657, 819
BstMWI	GCNNNNNNNGC	1 cut(s)	186
BstNI	CCWGG	3 cut(s)	172, 573, 724
BstNSI	RCATGY	1 cut(s)	751
BstPAI	GACNNNNGTC	1 cut(s)	296
BstSCI	CCNGG	4 cut(s)	170, 258, 571, 722
BstV2I	GAAGAC	1 cut(s)	292
BstX2I	RGATCY	3 cut(s)	67, 243, 255
BstYI	RGATCY	3 cut(s)	67, 243, 255
Bsu15I	ATCGAT	1 cut(s)	660
BsuRI	GGCC	1 cut(s)	240
BsuTUI	ATCGAT	1 cut(s)	660
BtgZI	GCGATG	1 cut(s)	328
BtsCI	GGATG	1 cut(s)	900
BtsI	GCAGTG	1 cut(s)	848
BtsIMutI	CAGTG	2 cut(s)	822, 848
CaiI	CAGNNNCTG	1 cut(s)	584
Cfr10I	RCCGGY	1 cut(s)	323
Cfr13I	GGNCC	3 cut(s)	148, 398, 617
ClaI	ATCGAT	1 cut(s)	660
CseI	GACGC	1 cut(s)	203
CsiI	ACCWGGT	1 cut(s)	722
Csp6I	GTAC	2 cut(s)	175, 327
CspAI	ACCGGT	1 cut(s)	323
CspCI	CAANNNNNGTGG	2 cut(s)	874, 909
CviAII	CATG	2 cut(s)	144, 748
CviQI	GTAC	2 cut(s)	175, 327
DdeI	CTNAG	4 cut(s)	371, 377, 442, 521
DpnI	GATC	7 cut(s)	69, 107, 245, 257, 462, 659, 821
DpnII	GATC	7 cut(s)	67, 105, 243, 255, 460, 657, 819
DrdI	GACNNNNNNGTC	1 cut(s)	58
DriI	GACNNNNNGTC	1 cut(s)	21
DseDI	GACNNNNNNGTC	1 cut(s)	58
EaeI	YGGCCR	1 cut(s)	238
Eam1104I	CTCTTC	1 cut(s)	864
Eam1105I	GACNNNNNGTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	864
Eco130I	CCWWGG	1 cut(s)	682
Eco31I	GGTCTC	1 cut(s)	284
Eco32I	GATATC	2 cut(s)	763, 778
Eco47I	GGWCC	3 cut(s)	148, 398, 617
Eco57I	CTGAAG	4 cut(s)	285, 845, 870, 905
Eco88I	CYCGRG	1 cut(s)	434
EcoO109I	RGGNCCY	1 cut(s)	148
EcoRII	CCWGG	3 cut(s)	170, 571, 722
EcoRV	GATATC	2 cut(s)	763, 778
EcoT14I	CCWWGG	1 cut(s)	682
ErhI	CCWWGG	1 cut(s)	682
FaeI	CATG	2 cut(s)	147, 751
FaiI	YATR	6 cut(s)	145, 230, 416, 548, 603, 749
FalI	AAGNNNNNCTT	2 cut(s)	843, 875
FaqI	GGGAC	2 cut(s)	161, 566
FatI	CATG	2 cut(s)	143, 747
FauI	CCCGC	1 cut(s)	677
Fnu4HI	GCNGC	1 cut(s)	190
FokI	GGATG	1 cut(s)	887
Fsp4HI	GCNGC	1 cut(s)	190
GluI	GCNGC	1 cut(s)	190
GsuI	CTGGAG	1 cut(s)	930
HaeIII	GGCC	1 cut(s)	240
HapII	CCGG	7 cut(s)	237, 249, 260, 324, 615, 655, 836
HgaI	GACGC	1 cut(s)	203
Hin1I	GRCGYC	1 cut(s)	195
Hin1II	CATG	2 cut(s)	147, 751
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HinfI	GANTC	4 cut(s)	388, 430, 554, 932
HpaI	GTTAAC	1 cut(s)	205
HpaII	CCGG	7 cut(s)	237, 249, 260, 324, 615, 655, 836
HphI	GGTGA	4 cut(s)	125, 284, 313, 698
Hpy166II	GTNNAC	4 cut(s)	39, 205, 846, 896
Hpy188I	TCNGA	4 cut(s)	255, 365, 393, 924
Hpy8I	GTNNAC	4 cut(s)	39, 205, 846, 896
Hpy99I	CGWCG	1 cut(s)	197
HpyAV	CCTTC	2 cut(s)	463, 599
HpyCH4III	ACNGT	5 cut(s)	164, 202, 212, 580, 891
HpyCH4IV	ACGT	1 cut(s)	494
HpyCH4V	TGCA	2 cut(s)	841, 987
HpyF10VI	GCNNNNNNNGC	1 cut(s)	186
HpyF3I	CTNAG	4 cut(s)	371, 377, 442, 521
HpySE526I	ACGT	1 cut(s)	494
Hsp92I	GRCGYC	1 cut(s)	195
Hsp92II	CATG	2 cut(s)	147, 751
KflI	GGGWCCC	1 cut(s)	148
KspAI	GTTAAC	1 cut(s)	205
Kzo9I	GATC	7 cut(s)	67, 105, 243, 255, 460, 657, 819
LmnI	GCTCC	4 cut(s)	173, 684, 859, 976
LweI	GCATC	1 cut(s)	679
MabI	ACCWGGT	1 cut(s)	722
MaeII	ACGT	1 cut(s)	494
MaeIII	GTNAC	4 cut(s)	74, 214, 272, 495
MalI	GATC	7 cut(s)	69, 107, 245, 257, 462, 659, 821
MboI	GATC	7 cut(s)	67, 105, 243, 255, 460, 657, 819
MboII	GAAGA	3 cut(s)	292, 851, 859
MflI	RGATCY	3 cut(s)	67, 243, 255
MhlI	GDGCHC	1 cut(s)	973
MluCI	AATT	2 cut(s)	402, 981
MlyI	GAGTC	1 cut(s)	563
MmeI	TCCRAC	2 cut(s)	358, 735
MseI	TTAA	3 cut(s)	204, 224, 651
MspA1I	CMGCKG	1 cut(s)	381
MspI	CCGG	7 cut(s)	237, 249, 260, 324, 615, 655, 836
MspR9I	CCNGG	4 cut(s)	172, 260, 573, 724
Mva1269I	GAATGC	1 cut(s)	372
MvaI	CCWGG	3 cut(s)	172, 573, 724
MwoI	GCNNNNNNNGC	1 cut(s)	186
NciI	CCSGG	1 cut(s)	260
NdeII	GATC	7 cut(s)	67, 105, 243, 255, 460, 657, 819
NlaIII	CATG	2 cut(s)	147, 751
NlaIV	GGNNCC	5 cut(s)	149, 150, 472, 544, 709
NmuCI	GTSAC	1 cut(s)	272
NspI	RCATGY	1 cut(s)	751
PaeR7I	CTCGAG	1 cut(s)	434
PciI	ACATGT	1 cut(s)	747
PctI	GAATGC	1 cut(s)	372
PfeI	GAWTC	3 cut(s)	388, 430, 932
PfoI	TCCNGGA	1 cut(s)	571
PinAI	ACCGGT	1 cut(s)	323
PkrI	GCNGC	1 cut(s)	191
PleI	GAGTC	1 cut(s)	562
PpsI	GAGTC	1 cut(s)	562
PpuMI	RGGWCCY	1 cut(s)	148
PscI	ACATGT	1 cut(s)	747
PshAI	GACNNNNGTC	1 cut(s)	296
PsiI	TTATAA	1 cut(s)	416
Psp5II	RGGWCCY	1 cut(s)	148
Psp6I	CCWGG	3 cut(s)	170, 571, 722
PspGI	CCWGG	3 cut(s)	170, 571, 722
PspN4I	GGNNCC	5 cut(s)	149, 150, 472, 544, 709
PspPI	GGNCC	3 cut(s)	148, 398, 617
PspPPI	RGGWCCY	1 cut(s)	148
PstNI	CAGNNNCTG	1 cut(s)	584
PsuI	RGATCY	3 cut(s)	67, 243, 255
PvuII	CAGCTG	1 cut(s)	381
RsaI	GTAC	2 cut(s)	176, 328
RsaNI	GTAC	2 cut(s)	175, 327
SaqAI	TTAA	3 cut(s)	204, 224, 651
SatI	GCNGC	1 cut(s)	190
Sau3AI	GATC	7 cut(s)	67, 105, 243, 255, 460, 657, 819
Sau96I	GGNCC	3 cut(s)	148, 398, 617
SchI	GAGTC	1 cut(s)	563
ScrFI	CCNGG	4 cut(s)	172, 260, 573, 724
SduI	GDGCHC	1 cut(s)	973
SexAI	ACCWGGT	1 cut(s)	722
SfaNI	GCATC	1 cut(s)	679
Sfr274I	CTCGAG	1 cut(s)	434
SinI	GGWCC	3 cut(s)	148, 398, 617
SlaI	CTCGAG	1 cut(s)	434
SmlI	CTYRAG	6 cut(s)	101, 182, 287, 353, 425, 434
SmoI	CTYRAG	6 cut(s)	101, 182, 287, 353, 425, 434
Sse9I	AATT	2 cut(s)	402, 981
SsiI	CCGC	4 cut(s)	189, 219, 304, 670
SspI	AATATT	1 cut(s)	832
StyD4I	CCNGG	4 cut(s)	170, 258, 571, 722
StyI	CCWWGG	1 cut(s)	682
TaaI	ACNGT	5 cut(s)	164, 202, 212, 580, 891
TaiI	ACGT	1 cut(s)	497
TaqI	TCGA	5 cut(s)	435, 645, 660, 695, 759
TasI	AATT	2 cut(s)	402, 981
TauI	GCSGC	1 cut(s)	192
TfiI	GAWTC	3 cut(s)	388, 430, 932
Tru1I	TTAA	3 cut(s)	204, 224, 651
Tru9I	TTAA	3 cut(s)	204, 224, 651
TscAI	CASTG	2 cut(s)	829, 848
TseFI	GTSAC	1 cut(s)	272
Tsp45I	GTSAC	1 cut(s)	272
TspDTI	ATGAA	1 cut(s)	132
TspRI	CASTG	2 cut(s)	829, 848
VpaK11BI	GGWCC	3 cut(s)	148, 398, 617
XapI	RAATTY	1 cut(s)	981
XceI	RCATGY	1 cut(s)	751
XhoI	CTCGAG	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.