Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0002823

Physical Location & Seq

Genomic Coordinates Reverse (-)

24456763 .. 24457993

Gene Structure 1231 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023486

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGACCTCAAGCTCTCCACCCTCCTCTGGTTTTCTCTGTTCTTCTCCACCATCCTAACCCCAACTCTCTCTGAGCTCTGCAACCCTCAAGACAAAAAGGTTCTCTTCGAAATCAAGACAGCCTTTAACAACCCCTACATCTTGTCCTCATGGAAATCCGACACCGACTGCTGTACCGGCTGGTACAACGTCGAGTGTGATCCCAACACCAACCGCATCAACTCCCTCACCATCTTCACCGACAACCGCCTCACAGGCCAAATCCCCGCCCAAGTCGGAGACTTGCCCTACCTCGAAACCCTCGTGCTCCGCAAGCTCCCGAATCTCACCGGTCCCATCCAGCCCTCCATCGCCAAGCTCAAGCACCTCAAGATGCTCAGGCTCAGCTGGAACGGCCTCTCAGGCTCAGTCCCTGACTTCCTCAGCCAGCTCAAGAACCTCACCTTCCTCGAACTCAACTTCAACAACTTCACAGGCTCCATCCCCAGCTCGCTTTCTCAGCTACCGAACTTATTAGCCCTTCATTTAGATCGCAACCAGCTCACAGGTCATATTCCTAGCTCATTCGGACGATTCGTTGGCAACGTTCCAGGTCTATTCCTCTCCCACAACCAGCTCACAGGCAAAATCCCAACCTCATTTGCTAACATGAACTTTGTTCAAATAGACTTGTCACGCAACAAGCTTGAAGGCGATGCGTCAGTTATATTCGGGTTGAACAAGACGACCCAGGCTGTGGATTTGTCGAGGAACATGCTGGACTTCGATCTGTCCAAGGTGGTGTTTTCGACAAGCTTGAGTTCGGTGGACTTGAACCATAACAGGATCACAGGGAGTATTCCGGAGCAGTTGACACAAATGGATAATTTGCAGTTGTTCAATGTGAGCTACAACAGGTTGTGTGGTAAGATTCCGGTAGGTGGGAAGTTGCAGAGCTTTGACACCACGTCGTATTTCCATAACCGATGCCTTTGTGGTGCCCCACTCCCAAGTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005911 GO:0008150 GO:0009505 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0030234 GO:0030312 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0050790 GO:0055044 GO:0065007 GO:0065009 GO:0071944 GO:0090353 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

333

Amino Acids

36.99

Weight (kDa)

8.39

Isoelectric Point (pI)

31.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	29 - 67	2.4e-10	Leucine rich repeat N-terminal domain
LRR_14	PF23598	86 - 180	1.5e-06	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06860 AT5G06870
fragaria_vesca	FvH4_6g22790
malus_domestica	MD14G1062500.v1.1 MD14G1062600.v1.1
prunus_persica	Prupe.7G072600_v2.0.a1 Prupe.7G072700_v2.0.a1 Prupe.7G072700_v2.0.a1
pyrus_communis	pycom14g05040
rosa_chinensis	RchiOBHm_Chr3g0480401 RchiOBHm_Chr3g0480411
rosa_laevigata	RLG00000023478 RLG00000023480 RLG00000023484 RLG00000023486
rosa_multiflora	Rmu_sc0002205.1_g000006 Rmu_sc0002205.1_g000018 Rmu_sc0002205.1_g000023 Rmu_sc0003742.1_g000007 Rmu_sc0006555.1_g000004 Rmu_sc0010988.1_g000004
rosa_roxburghii	Rroxscaffold_6G00401380 Rroxscaffold_6G00401390 Rroxscaffold_6G00401400
rosa_rugosa	Rorug03G0183600.1 Rorug03G0183700
rosa_samantha	Rh3AG235100 Rh3AG235200 Rh3BG267800 Rh3BG268000 Rh3BG268100 Rh3CG265000 Rh3CG265200 Rh3DG260900 Rh3DG261100 Rh5BG519600 Rh5CG543500
rosa_wichuraiana	Rw3G021110 Rw5G046270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	977
AccB7I	CCANNNNNTGG	1 cut(s)	736
AccIII	TCCGGA	1 cut(s)	841
AciI	CCGC	4 cut(s)	214, 247, 267, 310
AclI	AACGTT	1 cut(s)	585
AclWI	GGATC	2 cut(s)	194, 833
AfaI	GTAC	2 cut(s)	175, 185
AfiI	CCNNNNNNNGG	3 cut(s)	27, 736, 920
AgeI	ACCGGT	1 cut(s)	329
AgsI	TTSAA	6 cut(s)	463, 662, 689, 718, 814, 880
AhdI	GACNNNNNGTC	1 cut(s)	946
AjiI	CACGTC	1 cut(s)	948
AjnI	CCWGG	2 cut(s)	589, 729
Alw21I	GWGCWC	2 cut(s)	78, 309
Alw26I	GTCTC	1 cut(s)	273
AlwI	GGATC	2 cut(s)	194, 833
AlwNI	CAGNNNCTG	1 cut(s)	413
Aor13HI	TCCGGA	1 cut(s)	841
AoxI	GGCC	2 cut(s)	256, 394
AsiGI	ACCGGT	1 cut(s)	329
AspS9I	GGNCC	2 cut(s)	4, 332
AsuHPI	GGTGA	4 cut(s)	220, 229, 319, 433
AsuII	TTCGAA	1 cut(s)	108
AvaII	GGWCC	2 cut(s)	4, 332
BaeGI	GKGCMC	1 cut(s)	982
BaeI	ACNNNNGTAYC	2 cut(s)	157, 190
BanI	GGYRCC	1 cut(s)	977
BanII	GRGCYC	1 cut(s)	78
BauI	CACGAG	1 cut(s)	302
Bbv12I	GWGCWC	2 cut(s)	78, 309
BbvCI	CCTCAGC	1 cut(s)	422
BccI	CCATC	5 cut(s)	59, 239, 344, 356, 488
BceAI	ACGGC	1 cut(s)	409
BcgI	CGANNNNNNTGC	2 cut(s)	736, 770
BciT130I	CCWGG	2 cut(s)	591, 731
BcoDI	GTCTC	1 cut(s)	273
BfaI	CTAG	2 cut(s)	558, 997
BglI	GCCNNNNNGGC	2 cut(s)	255, 402
BlpI	GCTNAGC	1 cut(s)	383
Bme1390I	CCNGG	2 cut(s)	591, 731
Bme18I	GGWCC	2 cut(s)	4, 332
BmeRI	GACNNNNNGTC	1 cut(s)	946
BmgBI	CACGTC	1 cut(s)	948
BmgT120I	GGNCC	2 cut(s)	4, 332
BmiI	GGNNCC	3 cut(s)	334, 478, 979
BmrFI	CCNGG	2 cut(s)	591, 731
BmsI	GCATC	4 cut(s)	225, 363, 685, 956
Bpu10I	CCTNAGC	2 cut(s)	377, 422
Bpu1102I	GCTNAGC	1 cut(s)	383
Bpu14I	TTCGAA	1 cut(s)	108
BpuEI	CTTGAG	5 cut(s)	72, 344, 353, 416, 817
BsaJI	CCNNGG	2 cut(s)	729, 774
BsaWI	WCCGGW	3 cut(s)	329, 841, 913
Bsc4I	CCNNNNNNNGG	3 cut(s)	27, 736, 920
Bse118I	RCCGGY	2 cut(s)	176, 329
BseAI	TCCGGA	1 cut(s)	841
BseBI	CCWGG	2 cut(s)	591, 731
BseDI	CCNNGG	2 cut(s)	729, 774
BseGI	GGATG	3 cut(s)	51, 336, 480
BseLI	CCNNNNNNNGG	3 cut(s)	27, 736, 920
BseMII	CTCAG	7 cut(s)	63, 391, 397, 414, 420, 436, 512
BseRI	GAGGAG	1 cut(s)	14
BseSI	GKGCMC	1 cut(s)	982
BseYI	CCCAGC	1 cut(s)	485
BshFI	GGCC	2 cut(s)	258, 396
BshNI	GGYRCC	1 cut(s)	977
BshTI	ACCGGT	1 cut(s)	329
BsiHKAI	GWGCWC	2 cut(s)	78, 309
BsiSI	CCGG	4 cut(s)	177, 330, 842, 914
BslFI	GGGAC	2 cut(s)	318, 395
BslI	CCNNNNNNNGG	3 cut(s)	27, 736, 920
BsmAI	GTCTC	1 cut(s)	273
BsmFI	GGGAC	2 cut(s)	318, 395
BsnI	GGCC	2 cut(s)	258, 396
Bsp119I	TTCGAA	1 cut(s)	108
Bsp1286I	GDGCHC	3 cut(s)	78, 309, 982
Bsp13I	TCCGGA	1 cut(s)	841
Bsp143I	GATC	4 cut(s)	199, 529, 766, 825
Bsp1720I	GCTNAGC	1 cut(s)	383
BspACI	CCGC	4 cut(s)	214, 247, 267, 310
BspANI	GGCC	2 cut(s)	258, 396
BspCNI	CTCAG	7 cut(s)	64, 390, 396, 413, 419, 435, 511
BspEI	TCCGGA	1 cut(s)	841
BspLI	GGNNCC	3 cut(s)	334, 478, 979
BspPI	GGATC	2 cut(s)	194, 833
BspT104I	TTCGAA	1 cut(s)	108
BspT107I	GGYRCC	1 cut(s)	977
BsrFI	RCCGGY	2 cut(s)	176, 329
BssAI	RCCGGY	2 cut(s)	176, 329
BssECI	CCNNGG	2 cut(s)	729, 774
BssMI	GATC	4 cut(s)	199, 529, 766, 825
BssSI	CACGAG	1 cut(s)	302
BssT1I	CCWWGG	1 cut(s)	774
Bst2BI	CACGAG	1 cut(s)	302
Bst2UI	CCWGG	2 cut(s)	591, 731
Bst6I	CTCTTC	1 cut(s)	110
BstBI	TTCGAA	1 cut(s)	108
BstC8I	GCNNGC	3 cut(s)	314, 428, 491
BstDEI	CTNAG	7 cut(s)	72, 377, 383, 400, 406, 422, 498
BstF5I	GGATG	3 cut(s)	51, 336, 480
BstKTI	GATC	4 cut(s)	202, 532, 769, 828
BstMAI	GTCTC	1 cut(s)	273
BstMBI	GATC	4 cut(s)	199, 529, 766, 825
BstMWI	GCNNNNNNNGC	6 cut(s)	177, 255, 313, 393, 402, 499
BstNI	CCWGG	2 cut(s)	591, 731
BstNSI	RCATGY	1 cut(s)	757
BstSCI	CCNGG	2 cut(s)	589, 729
BstSLI	GKGCMC	1 cut(s)	982
BsuRI	GGCC	2 cut(s)	258, 396
BtgZI	GCGATG	2 cut(s)	334, 708
BtrI	CACGTC	1 cut(s)	948
BtsCI	GGATG	3 cut(s)	51, 336, 480
Cac8I	GCNNGC	3 cut(s)	314, 428, 491
CaiI	CAGNNNCTG	1 cut(s)	413
Cfr10I	RCCGGY	2 cut(s)	176, 329
Cfr13I	GGNCC	2 cut(s)	4, 332
CseI	GACGC	1 cut(s)	687
Csp6I	GTAC	2 cut(s)	174, 184
CspAI	ACCGGT	1 cut(s)	329
CviAII	CATG	3 cut(s)	150, 649, 754
CviQI	GTAC	2 cut(s)	174, 184
DdeI	CTNAG	7 cut(s)	72, 377, 383, 400, 406, 422, 498
DpnI	GATC	4 cut(s)	201, 531, 768, 827
DpnII	GATC	4 cut(s)	199, 529, 766, 825
DriI	GACNNNNNGTC	1 cut(s)	946
Eam1104I	CTCTTC	1 cut(s)	110
Eam1105I	GACNNNNNGTC	1 cut(s)	946
EarI	CTCTTC	1 cut(s)	110
Ecl136II	GAGCTC	1 cut(s)	76
Eco130I	CCWWGG	1 cut(s)	774
Eco24I	GRGCYC	1 cut(s)	78
Eco47I	GGWCC	2 cut(s)	4, 332
Eco53kI	GAGCTC	1 cut(s)	76
EcoICRI	GAGCTC	1 cut(s)	76
EcoRII	CCWGG	2 cut(s)	589, 729
EcoT14I	CCWWGG	1 cut(s)	774
EcoT38I	GRGCYC	1 cut(s)	78
ErhI	CCWWGG	1 cut(s)	774
FaeI	CATG	3 cut(s)	153, 652, 757
FaiI	YATR	7 cut(s)	151, 552, 650, 707, 755, 819, 960
FalI	AAGNNNNNCTT	4 cut(s)	89, 121, 107, 139
FaqI	GGGAC	2 cut(s)	318, 395
FatI	CATG	3 cut(s)	149, 648, 753
FauI	CCCGC	1 cut(s)	274
FokI	GGATG	3 cut(s)	38, 323, 467
FriOI	GRGCYC	1 cut(s)	78
FspBI	CTAG	2 cut(s)	558, 997
GsaI	CCCAGC	1 cut(s)	489
HaeIII	GGCC	2 cut(s)	258, 396
HapII	CCGG	4 cut(s)	177, 330, 842, 914
HgaI	GACGC	1 cut(s)	687
Hin1II	CATG	3 cut(s)	153, 652, 757
HincII	GTYRAC	1 cut(s)	852
HindII	GTYRAC	1 cut(s)	852
HindIII	AAGCTT	2 cut(s)	683, 793
HinfI	GANTC	3 cut(s)	322, 573, 910
HpaII	CCGG	4 cut(s)	177, 330, 842, 914
HphI	GGTGA	4 cut(s)	220, 229, 319, 433
Hpy166II	GTNNAC	2 cut(s)	808, 852
Hpy188I	TCNGA	4 cut(s)	73, 160, 278, 569
Hpy188III	TCNNGA	6 cut(s)	89, 115, 319, 370, 433, 842
Hpy8I	GTNNAC	2 cut(s)	808, 852
Hpy99I	CGWCG	2 cut(s)	194, 952
HpyAV	CCTTC	3 cut(s)	454, 530, 683
HpyCH4IV	ACGT	3 cut(s)	189, 585, 947
HpyCH4V	TGCA	3 cut(s)	81, 871, 931
HpyF10VI	GCNNNNNNNGC	6 cut(s)	177, 255, 313, 393, 402, 499
HpyF3I	CTNAG	7 cut(s)	72, 377, 383, 400, 406, 422, 498
HpySE526I	ACGT	3 cut(s)	189, 585, 947
Hsp92II	CATG	3 cut(s)	153, 652, 757
Kpn2I	TCCGGA	1 cut(s)	841
Kzo9I	GATC	4 cut(s)	199, 529, 766, 825
LmnI	GCTCC	4 cut(s)	312, 321, 482, 844
LweI	GCATC	4 cut(s)	225, 363, 685, 956
MaeI	CTAG	2 cut(s)	558, 997
MaeII	ACGT	3 cut(s)	189, 585, 947
MaeIII	GTNAC	1 cut(s)	672
MalI	GATC	4 cut(s)	201, 531, 768, 827
MboI	GATC	4 cut(s)	199, 529, 766, 825
MboII	GAAGA	3 cut(s)	34, 97, 226
MhlI	GDGCHC	3 cut(s)	78, 309, 982
MluCI	AATT	1 cut(s)	865
MmeI	TCCRAC	2 cut(s)	183, 256
MroI	TCCGGA	1 cut(s)	841
MseI	TTAA	1 cut(s)	126
MspA1I	CMGCKG	1 cut(s)	387
MspI	CCGG	4 cut(s)	177, 330, 842, 914
MspR9I	CCNGG	2 cut(s)	591, 731
MvaI	CCWGG	2 cut(s)	591, 731
MwoI	GCNNNNNNNGC	6 cut(s)	177, 255, 313, 393, 402, 499
NdeII	GATC	4 cut(s)	199, 529, 766, 825
NlaIII	CATG	3 cut(s)	153, 652, 757
NlaIV	GGNNCC	3 cut(s)	334, 478, 979
NmuCI	GTSAC	1 cut(s)	672
NspI	RCATGY	1 cut(s)	757
NspV	TTCGAA	1 cut(s)	108
PcsI	WCGNNNNNNNCGW	3 cut(s)	300, 573, 582
PfeI	GAWTC	3 cut(s)	322, 573, 910
PflMI	CCANNNNNTGG	1 cut(s)	736
PinAI	ACCGGT	1 cut(s)	329
Psp124BI	GAGCTC	1 cut(s)	78
Psp1406I	AACGTT	1 cut(s)	585
Psp6I	CCWGG	2 cut(s)	589, 729
PspFI	CCCAGC	1 cut(s)	485
PspGI	CCWGG	2 cut(s)	589, 729
PspN4I	GGNNCC	3 cut(s)	334, 478, 979
PspPI	GGNCC	2 cut(s)	4, 332
PstNI	CAGNNNCTG	1 cut(s)	413
PvuII	CAGCTG	1 cut(s)	387
RsaI	GTAC	2 cut(s)	175, 185
RsaNI	GTAC	2 cut(s)	174, 184
SacI	GAGCTC	1 cut(s)	78
SaqAI	TTAA	1 cut(s)	126
Sau3AI	GATC	4 cut(s)	199, 529, 766, 825
Sau96I	GGNCC	2 cut(s)	4, 332
ScrFI	CCNGG	2 cut(s)	591, 731
SduI	GDGCHC	3 cut(s)	78, 309, 982
SfaNI	GCATC	4 cut(s)	225, 363, 685, 956
SfuI	TTCGAA	1 cut(s)	108
SinI	GGWCC	2 cut(s)	4, 332
SmlI	CTYRAG	6 cut(s)	8, 87, 359, 368, 431, 796
SmoI	CTYRAG	6 cut(s)	8, 87, 359, 368, 431, 796
Sse9I	AATT	1 cut(s)	865
SsiI	CCGC	4 cut(s)	214, 247, 267, 310
SspMI	CTAG	2 cut(s)	558, 997
SstI	GAGCTC	1 cut(s)	78
StyD4I	CCNGG	2 cut(s)	589, 729
StyI	CCWWGG	1 cut(s)	774
TaiI	ACGT	3 cut(s)	192, 588, 950
TaqI	TCGA	7 cut(s)	108, 192, 294, 450, 746, 765, 788
TasI	AATT	1 cut(s)	865
TfiI	GAWTC	3 cut(s)	322, 573, 910
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TseFI	GTSAC	1 cut(s)	672
Tsp45I	GTSAC	1 cut(s)	672
TspDTI	ATGAA	2 cut(s)	512, 665
Van91I	CCANNNNNTGG	1 cut(s)	736
VpaK11BI	GGWCC	2 cut(s)	4, 332
XceI	RCATGY	1 cut(s)	757
XspI	CTAG	2 cut(s)	558, 997

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.