Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002823

Physical Location & Seq

Genomic Coordinates Forward (+)

16438053 .. 16439915

Gene Structure 1863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g22790.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGACCTAAAGCTCTCCACTCTCCTCTGCATTTCTCTGTTCTTCTCCACCATCTTAACCCCAACTCTCTCCGAGCTCTGTAACCCTACAGACAAAAAAGTTCTCTTCGAAATCAAGACAGCCTTCAATAACCCCTACATCTTGTCCTCATGGAAATCCGACGCCGACTGCTGTACCGACTGGTACAATGTCGAGTGTGATCCCAACACCAACCGTATCAACTCCCTCACCATCTTTACTGACGACCGCCTCACCGGCCAAATCCCCGCCCAAGTCGGAGACTTGCCCTACCTCGAAACCCTGGTGCTCCGCAAGCTCCCCAATCTCACAGGTCCCATCCAGCCCTCCATCGCCAAGCTCAAGCACCTCAAGATGCTCAGGCTCAGCTGGAACGGCCTCTCTGGCTCAGTCCCTGACTTCCTCAGCCAGCTTAAGAACCTCACCTTCCTCGAGCTCAACTATAACAACTTCACAGGCTCCGTTCCCAGCTCGCTTTCAAAGCTACCGAACTTGCTAGCTCTTCATCTAGACCGCAACCAGCTCACAGGTAATATTCCTAGTTCATACGGGAAATTCGTTGGCACCGTTCCAGATCTCTTCCTCTCCCACAACAAGCTCACAGGCAAAATCCCAACCTCATTTGCTAACATGAACTTTGATCGGATAGACTTGTCACGCAACATGCTGGAAGGAGACGCGTCAATGATATTCGGGATGAACAAGACGACCCAGATTGTGGATTTGTCAAGGAACATGCTAGAATTCGATCTGTCCAAGGTGGTGTTTTCGACAAGCTTGATCTCACTGGACTTGAACCATAACAGGATGACAGGTAGTATTCCGGAGCAGTTGACCCAATTGGATAATTTGCAGTTGTTCAATGTGAGCTACAACAGGTTGTGTGGTCAGATTCCGGTTGGTGGGAAGTTGCAGAGCTTTGACACAACGTCATACTTCCATAACCGGTGTCTGTGCGGTGCTCCACTCCCAAGTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005911 GO:0008150 GO:0009505 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0030234 GO:0030312 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0050790 GO:0055044 GO:0065007 GO:0065009 GO:0071944 GO:0090353 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

333

Amino Acids

37.08

Weight (kDa)

6.93

Isoelectric Point (pI)

29.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	29 - 67	8e-10	Leucine rich repeat N-terminal domain
LRR_14	PF23598	87 - 177	4.8e-06	Leucine-rich repeat region
LRR_8	PF13855	122 - 181	2e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06860 AT5G06870
fragaria_vesca	FvH4_6g22790
malus_domestica	MD14G1062500.v1.1 MD14G1062600.v1.1
prunus_persica	Prupe.7G072600_v2.0.a1 Prupe.7G072700_v2.0.a1 Prupe.7G072700_v2.0.a1
pyrus_communis	pycom14g05040
rosa_chinensis	RchiOBHm_Chr3g0480401 RchiOBHm_Chr3g0480411
rosa_laevigata	RLG00000023478 RLG00000023480 RLG00000023484 RLG00000023486
rosa_multiflora	Rmu_sc0002205.1_g000006 Rmu_sc0002205.1_g000018 Rmu_sc0002205.1_g000023 Rmu_sc0003742.1_g000007 Rmu_sc0006555.1_g000004 Rmu_sc0010988.1_g000004
rosa_roxburghii	Rroxscaffold_6G00401380 Rroxscaffold_6G00401390 Rroxscaffold_6G00401400
rosa_rugosa	Rorug03G0183600.1 Rorug03G0183700
rosa_samantha	Rh3AG235100 Rh3AG235200 Rh3BG267800 Rh3BG268000 Rh3BG268100 Rh3CG265000 Rh3CG265200 Rh3DG260900 Rh3DG261100 Rh5BG519600 Rh5CG543500
rosa_wichuraiana	Rw3G021110 Rw5G046270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	581
AccB7I	CCANNNNNTGG	1 cut(s)	736
AccII	CGCG	1 cut(s)	698
AccIII	TCCGGA	1 cut(s)	841
AciI	CCGC	5 cut(s)	247, 267, 310, 532, 975
AclWI	GGATC	1 cut(s)	194
AcoI	YGGCCR	1 cut(s)	256
AcsI	RAATTY	2 cut(s)	572, 761
AcyI	GRCGYC	1 cut(s)	162
AfaI	GTAC	2 cut(s)	175, 185
AfiI	CCNNNNNNNGG	2 cut(s)	736, 920
AflII	CTTAAG	1 cut(s)	431
AflIII	ACRYGT	1 cut(s)	696
AgeI	ACCGGT	1 cut(s)	963
AgsI	TTSAA	4 cut(s)	127, 498, 814, 880
AhdI	GACNNNNNGTC	1 cut(s)	946
AjnI	CCWGG	1 cut(s)	300
Alw21I	GWGCWC	4 cut(s)	78, 309, 456, 982
Alw26I	GTCTC	2 cut(s)	273, 687
AlwI	GGATC	1 cut(s)	194
AlwNI	CAGNNNCTG	1 cut(s)	413
Ama87I	CYCGRG	1 cut(s)	449
Aor13HI	TCCGGA	1 cut(s)	841
AoxI	GGCC	2 cut(s)	256, 394
ApoI	RAATTY	2 cut(s)	572, 761
AsiGI	ACCGGT	1 cut(s)	963
AspS9I	GGNCC	2 cut(s)	4, 332
AsuHPI	GGTGA	3 cut(s)	220, 244, 433
AsuII	TTCGAA	1 cut(s)	108
AsuNHI	GCTAGC	1 cut(s)	514
AvaI	CYCGRG	1 cut(s)	449
AvaII	GGWCC	2 cut(s)	4, 332
BaeI	ACNNNNGTAYC	2 cut(s)	157, 190
BanI	GGYRCC	1 cut(s)	581
BanII	GRGCYC	2 cut(s)	78, 456
Bbv12I	GWGCWC	4 cut(s)	78, 309, 456, 982
BbvCI	CCTCAGC	1 cut(s)	422
BccI	CCATC	4 cut(s)	59, 239, 344, 356
BceAI	ACGGC	1 cut(s)	409
BciT130I	CCWGG	1 cut(s)	302
BcoDI	GTCTC	2 cut(s)	273, 687
BfaI	CTAG	5 cut(s)	515, 527, 558, 758, 997
BfmI	CTRYAG	1 cut(s)	87
BfrI	CTTAAG	1 cut(s)	431
BglI	GCCNNNNNGGC	2 cut(s)	255, 402
BglII	AGATCT	1 cut(s)	592
BlpI	GCTNAGC	1 cut(s)	383
Bme1390I	CCNGG	1 cut(s)	302
Bme18I	GGWCC	2 cut(s)	4, 332
BmeRI	GACNNNNNGTC	1 cut(s)	946
BmeT110I	CYCGRG	1 cut(s)	449
BmgT120I	GGNCC	2 cut(s)	4, 332
BmiI	GGNNCC	3 cut(s)	334, 478, 583
BmrFI	CCNGG	1 cut(s)	302
BmsI	GCATC	1 cut(s)	363
BmtI	GCTAGC	1 cut(s)	518
Bpu10I	CCTNAGC	2 cut(s)	377, 422
Bpu1102I	GCTNAGC	1 cut(s)	383
Bpu14I	TTCGAA	1 cut(s)	108
BpuEI	CTTGAG	2 cut(s)	344, 353
BsaHI	GRCGYC	1 cut(s)	162
BsaJI	CCNNGG	2 cut(s)	300, 774
BsaWI	WCCGGW	3 cut(s)	841, 913, 963
Bsc4I	CCNNNNNNNGG	2 cut(s)	736, 920
Bse118I	RCCGGY	2 cut(s)	254, 963
Bse1I	ACTGG	2 cut(s)	185, 810
BseAI	TCCGGA	1 cut(s)	841
BseBI	CCWGG	1 cut(s)	302
BseDI	CCNNGG	2 cut(s)	300, 774
BseGI	GGATG	3 cut(s)	336, 720, 831
BseLI	CCNNNNNNNGG	2 cut(s)	736, 920
BseMII	CTCAG	4 cut(s)	391, 397, 420, 436
BseNI	ACTGG	2 cut(s)	185, 810
BseRI	GAGGAG	1 cut(s)	14
BseYI	CCCAGC	1 cut(s)	485
Bsh1236I	CGCG	1 cut(s)	698
Bsh1285I	CGRYCG	1 cut(s)	247
BshFI	GGCC	2 cut(s)	258, 396
BshNI	GGYRCC	1 cut(s)	581
BshTI	ACCGGT	1 cut(s)	963
BsiEI	CGRYCG	1 cut(s)	247
BsiHKAI	GWGCWC	4 cut(s)	78, 309, 456, 982
BsiHKCI	CYCGRG	1 cut(s)	449
BsiSI	CCGG	4 cut(s)	255, 842, 914, 964
BslFI	GGGAC	2 cut(s)	318, 395
BslI	CCNNNNNNNGG	2 cut(s)	736, 920
BsmAI	GTCTC	2 cut(s)	273, 687
BsmBI	CGTCTC	1 cut(s)	687
BsmFI	GGGAC	2 cut(s)	318, 395
BsnI	GGCC	2 cut(s)	258, 396
BsoBI	CYCGRG	1 cut(s)	449
Bsp119I	TTCGAA	1 cut(s)	108
Bsp1286I	GDGCHC	4 cut(s)	78, 309, 456, 982
Bsp13I	TCCGGA	1 cut(s)	841
Bsp143I	GATC	5 cut(s)	199, 592, 658, 766, 798
Bsp1720I	GCTNAGC	1 cut(s)	383
BspACI	CCGC	5 cut(s)	247, 267, 310, 532, 975
BspANI	GGCC	2 cut(s)	258, 396
BspCNI	CTCAG	4 cut(s)	390, 396, 419, 435
BspEI	TCCGGA	1 cut(s)	841
BspFNI	CGCG	1 cut(s)	698
BspLI	GGNNCC	3 cut(s)	334, 478, 583
BspOI	GCTAGC	1 cut(s)	518
BspPI	GGATC	1 cut(s)	194
BspQI	GCTCTTC	1 cut(s)	525
BspT104I	TTCGAA	1 cut(s)	108
BspT107I	GGYRCC	1 cut(s)	581
BspTI	CTTAAG	1 cut(s)	431
BsrFI	RCCGGY	2 cut(s)	254, 963
BsrI	ACTGG	2 cut(s)	185, 810
BssAI	RCCGGY	2 cut(s)	254, 963
BssECI	CCNNGG	2 cut(s)	300, 774
BssMI	GATC	5 cut(s)	199, 592, 658, 766, 798
BssNI	GRCGYC	1 cut(s)	162
BssT1I	CCWWGG	1 cut(s)	774
Bst2UI	CCWGG	1 cut(s)	302
Bst4CI	ACNGT	2 cut(s)	215, 586
Bst6I	CTCTTC	3 cut(s)	110, 525, 602
BstACI	GRCGYC	1 cut(s)	162
BstAFI	CTTAAG	1 cut(s)	431
BstBI	TTCGAA	1 cut(s)	108
BstC8I	GCNNGC	4 cut(s)	314, 428, 491, 516
BstDEI	CTNAG	4 cut(s)	377, 383, 406, 422
BstF5I	GGATG	3 cut(s)	336, 720, 831
BstFNI	CGCG	1 cut(s)	698
BstKTI	GATC	5 cut(s)	202, 595, 661, 769, 801
BstMAI	GTCTC	2 cut(s)	273, 687
BstMBI	GATC	5 cut(s)	199, 592, 658, 766, 798
BstMCI	CGRYCG	1 cut(s)	247
BstMWI	GCNNNNNNNGC	5 cut(s)	255, 313, 393, 402, 499
BstNI	CCWGG	1 cut(s)	302
BstNSI	RCATGY	2 cut(s)	685, 757
BstSCI	CCNGG	1 cut(s)	300
BstSFI	CTRYAG	1 cut(s)	87
BstUI	CGCG	1 cut(s)	698
BstX2I	RGATCY	1 cut(s)	592
BstYI	RGATCY	1 cut(s)	592
BsuRI	GGCC	2 cut(s)	258, 396
BtgZI	GCGATG	1 cut(s)	334
BtsCI	GGATG	3 cut(s)	336, 720, 831
BtsIMutI	CAGTG	1 cut(s)	803
Cac8I	GCNNGC	4 cut(s)	314, 428, 491, 516
CaiI	CAGNNNCTG	1 cut(s)	413
Cfr10I	RCCGGY	2 cut(s)	254, 963
Cfr13I	GGNCC	2 cut(s)	4, 332
CseI	GACGC	3 cut(s)	170, 687, 704
Csp6I	GTAC	2 cut(s)	174, 184
CspAI	ACCGGT	1 cut(s)	963
CviAII	CATG	4 cut(s)	150, 649, 682, 754
CviQI	GTAC	2 cut(s)	174, 184
DdeI	CTNAG	4 cut(s)	377, 383, 406, 422
DpnI	GATC	5 cut(s)	201, 594, 660, 768, 800
DpnII	GATC	5 cut(s)	199, 592, 658, 766, 798
DriI	GACNNNNNGTC	1 cut(s)	946
EaeI	YGGCCR	1 cut(s)	256
Eam1104I	CTCTTC	3 cut(s)	110, 525, 602
Eam1105I	GACNNNNNGTC	1 cut(s)	946
EarI	CTCTTC	3 cut(s)	110, 525, 602
Ecl136II	GAGCTC	2 cut(s)	76, 454
Eco130I	CCWWGG	1 cut(s)	774
Eco24I	GRGCYC	2 cut(s)	78, 456
Eco47I	GGWCC	2 cut(s)	4, 332
Eco53kI	GAGCTC	2 cut(s)	76, 454
Eco88I	CYCGRG	1 cut(s)	449
EcoICRI	GAGCTC	2 cut(s)	76, 454
EcoO109I	RGGNCCY	1 cut(s)	332
EcoRI	GAATTC	1 cut(s)	761
EcoRII	CCWGG	1 cut(s)	300
EcoT14I	CCWWGG	1 cut(s)	774
EcoT38I	GRGCYC	2 cut(s)	78, 456
ErhI	CCWWGG	1 cut(s)	774
Esp3I	CGTCTC	1 cut(s)	687
FaeI	CATG	4 cut(s)	153, 652, 685, 757
FaiI	YATR	9 cut(s)	151, 462, 565, 650, 683, 755, 819, 952, 960
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FaqI	GGGAC	2 cut(s)	318, 395
FatI	CATG	4 cut(s)	149, 648, 681, 753
FauI	CCCGC	1 cut(s)	274
FokI	GGATG	3 cut(s)	323, 727, 838
FriOI	GRGCYC	2 cut(s)	78, 456
FspBI	CTAG	5 cut(s)	515, 527, 558, 758, 997
GsaI	CCCAGC	1 cut(s)	489
HaeIII	GGCC	2 cut(s)	258, 396
HapII	CCGG	4 cut(s)	255, 842, 914, 964
HgaI	GACGC	3 cut(s)	170, 687, 704
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	4 cut(s)	153, 652, 685, 757
HincII	GTYRAC	1 cut(s)	852
HindII	GTYRAC	1 cut(s)	852
HindIII	AAGCTT	1 cut(s)	793
HinfI	GANTC	1 cut(s)	910
HpaII	CCGG	4 cut(s)	255, 842, 914, 964
HphI	GGTGA	3 cut(s)	220, 244, 433
Hpy166II	GTNNAC	1 cut(s)	852
Hpy188I	TCNGA	5 cut(s)	73, 160, 278, 663, 909
Hpy188III	TCNNGA	6 cut(s)	115, 370, 527, 590, 712, 842
Hpy8I	GTNNAC	1 cut(s)	852
Hpy99I	CGWCG	1 cut(s)	164
HpyAV	CCTTC	3 cut(s)	133, 454, 683
HpyCH4III	ACNGT	2 cut(s)	215, 586
HpyCH4IV	ACGT	1 cut(s)	947
HpyCH4V	TGCA	3 cut(s)	30, 871, 931
HpyF10VI	GCNNNNNNNGC	5 cut(s)	255, 313, 393, 402, 499
HpyF3I	CTNAG	4 cut(s)	377, 383, 406, 422
HpySE526I	ACGT	1 cut(s)	947
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	4 cut(s)	153, 652, 685, 757
Kpn2I	TCCGGA	1 cut(s)	841
Kzo9I	GATC	5 cut(s)	199, 592, 658, 766, 798
LguI	GCTCTTC	1 cut(s)	525
LmnI	GCTCC	5 cut(s)	312, 321, 482, 844, 985
LweI	GCATC	1 cut(s)	363
MaeI	CTAG	5 cut(s)	515, 527, 558, 758, 997
MaeII	ACGT	1 cut(s)	947
MaeIII	GTNAC	2 cut(s)	80, 672
MalI	GATC	5 cut(s)	201, 594, 660, 768, 800
MboI	GATC	5 cut(s)	199, 592, 658, 766, 798
MboII	GAAGA	4 cut(s)	34, 97, 512, 589
MfeI	CAATTG	1 cut(s)	857
MflI	RGATCY	1 cut(s)	592
MhlI	GDGCHC	4 cut(s)	78, 309, 456, 982
MluCI	AATT	4 cut(s)	572, 761, 857, 865
MluI	ACGCGT	1 cut(s)	696
MmeI	TCCRAC	2 cut(s)	183, 256
MroI	TCCGGA	1 cut(s)	841
MseI	TTAA	2 cut(s)	56, 432
MspA1I	CMGCKG	1 cut(s)	387
MspCI	CTTAAG	1 cut(s)	431
MspI	CCGG	4 cut(s)	255, 842, 914, 964
MspR9I	CCNGG	1 cut(s)	302
MunI	CAATTG	1 cut(s)	857
MvaI	CCWGG	1 cut(s)	302
MvnI	CGCG	1 cut(s)	698
MwoI	GCNNNNNNNGC	5 cut(s)	255, 313, 393, 402, 499
NdeII	GATC	5 cut(s)	199, 592, 658, 766, 798
NheI	GCTAGC	1 cut(s)	514
NlaIII	CATG	4 cut(s)	153, 652, 685, 757
NlaIV	GGNNCC	3 cut(s)	334, 478, 583
NmuCI	GTSAC	1 cut(s)	672
NspI	RCATGY	2 cut(s)	685, 757
NspV	TTCGAA	1 cut(s)	108
PaeR7I	CTCGAG	1 cut(s)	449
PciSI	GCTCTTC	1 cut(s)	525
PcsI	WCGNNNNNNNCGW	2 cut(s)	573, 582
PfeI	GAWTC	1 cut(s)	910
PflMI	CCANNNNNTGG	1 cut(s)	736
PinAI	ACCGGT	1 cut(s)	963
PpuMI	RGGWCCY	1 cut(s)	332
Psp124BI	GAGCTC	2 cut(s)	78, 456
Psp5II	RGGWCCY	1 cut(s)	332
Psp6I	CCWGG	1 cut(s)	300
PspFI	CCCAGC	1 cut(s)	485
PspGI	CCWGG	1 cut(s)	300
PspN4I	GGNNCC	3 cut(s)	334, 478, 583
PspPI	GGNCC	2 cut(s)	4, 332
PspPPI	RGGWCCY	1 cut(s)	332
PspXI	VCTCGAGB	1 cut(s)	449
PstNI	CAGNNNCTG	1 cut(s)	413
PsuI	RGATCY	1 cut(s)	592
PvuII	CAGCTG	1 cut(s)	387
RsaI	GTAC	2 cut(s)	175, 185
RsaNI	GTAC	2 cut(s)	174, 184
SacI	GAGCTC	2 cut(s)	78, 456
SapI	GCTCTTC	1 cut(s)	525
SaqAI	TTAA	2 cut(s)	56, 432
Sau3AI	GATC	5 cut(s)	199, 592, 658, 766, 798
Sau96I	GGNCC	2 cut(s)	4, 332
ScrFI	CCNGG	1 cut(s)	302
SduI	GDGCHC	4 cut(s)	78, 309, 456, 982
SfaNI	GCATC	1 cut(s)	363
SfcI	CTRYAG	1 cut(s)	87
Sfr274I	CTCGAG	1 cut(s)	449
SfuI	TTCGAA	1 cut(s)	108
SinI	GGWCC	2 cut(s)	4, 332
SlaI	CTCGAG	1 cut(s)	449
SmlI	CTYRAG	4 cut(s)	359, 368, 431, 449
SmoI	CTYRAG	4 cut(s)	359, 368, 431, 449
Sse9I	AATT	4 cut(s)	572, 761, 857, 865
SsiI	CCGC	5 cut(s)	247, 267, 310, 532, 975
SspI	AATATT	1 cut(s)	553
SspMI	CTAG	5 cut(s)	515, 527, 558, 758, 997
SstI	GAGCTC	2 cut(s)	78, 456
StyD4I	CCNGG	1 cut(s)	300
StyI	CCWWGG	1 cut(s)	774
TaaI	ACNGT	2 cut(s)	215, 586
TaiI	ACGT	1 cut(s)	950
TaqI	TCGA	6 cut(s)	108, 192, 294, 450, 765, 788
TasI	AATT	4 cut(s)	572, 761, 857, 865
TfiI	GAWTC	1 cut(s)	910
Tru1I	TTAA	2 cut(s)	56, 432
Tru9I	TTAA	2 cut(s)	56, 432
TscAI	CASTG	1 cut(s)	810
TseFI	GTSAC	1 cut(s)	672
Tsp45I	GTSAC	1 cut(s)	672
TspDTI	ATGAA	4 cut(s)	512, 552, 665, 731
TspGWI	ACGGA	1 cut(s)	469
TspRI	CASTG	1 cut(s)	810
Van91I	CCANNNNNTGG	1 cut(s)	736
Vha464I	CTTAAG	1 cut(s)	431
VpaK11BI	GGWCC	2 cut(s)	4, 332
XapI	RAATTY	2 cut(s)	572, 761
XbaI	TCTAGA	1 cut(s)	526
XceI	RCATGY	2 cut(s)	685, 757
XhoI	CTCGAG	1 cut(s)	449
XspI	CTAG	5 cut(s)	515, 527, 558, 758, 997

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.