Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002823

Physical Location & Seq

Genomic Coordinates Forward (+)

15804424 .. 15808503

Gene Structure 4080 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0183700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGCGGAGCACTTGGCATCGATCTTCGGCACAGAGAAGGACAGGGTTAACTGCCCTTTCTACTTCAAGATCGGCGCCTGCCGACATGGCGACCGCTGCTCTCGCCTCCACACCAAGCCCAGCATCAGCCCCACCCTTCTCCTCTCCAACATGTACCAGCGCCCCGATATGCTCACCAACCCCGGCGTCGACCCCCAGGGCCAGGCCCTCGACCCCCGCAAGATCCAAGACAACTTCGAGGATTTCTATGAGGATCTATTCGAGGAGCTGAGCAAGTACGGACAGATCGAGAGCTTGAATATCTGTGATAATTTGGCTGACCACATGGTTGGGAATGTGTACGTTCAGTTCAGGGAGGAAGAACATGCTGCCGCCGCGCTTCAGAATCTCACTGGGAGGTTCTATGCAGGGCGCCCCATCATTGTTGACTTTTCACCAGTGACCGACTTCCGTGAAGCTACATGTAGGCAGTATGAAGAAAATGTATGCAATCGAGGTGGCTACTGCAATTTCATGCATTTGAAGAAGATTAGCAGGGAATTGAGGAGGCGATTATTCGGAAGAAACAGGCGAAGGCGGAGCCGTAGTCGCAGCAGAAGCCATAGTCCTCAAAAGCATCAGCGTGGTGGTTATCAGGAGCGTCCACACGGAGGTCGTGGTTTTGGCAGAAGAGGAGGAGATGATGAGAGAGATCGTTTCAATGATAAAAACAGGAGGCCTAGAAGCCGTAGTCCTGGTGGACGTAGAGGAAGAAGTAGAAGCCCTGTGGGGAGAAGGAATAGGAGTCCTCCAGCCAGGGAAAGCAGTGCTGAAAGAAGGGCCAAGATTGAGCAATGGAACAGGGAAAAGGAACAGGTTGATTCTGGAGATAAGCATGATAACAATAATAATAACAGCAACAATAATGATGATGAATGGAATGGTGATAATAATAGTGATCAGTACTATGATCCTCAGCAGCAGCAGCAACAGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005911 GO:0008150 GO:0009505 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0030234 GO:0030312 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0050790 GO:0055044 GO:0065007 GO:0065009 GO:0071944 GO:0090353 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

325

Amino Acids

37.95

Weight (kDa)

9.5

Isoelectric Point (pI)

78.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	14 - 37	2.5e-07	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
RRM_1	PF00076	84 - 140	2.7e-07	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06860 AT5G06870
fragaria_vesca	FvH4_6g22790
malus_domestica	MD14G1062500.v1.1 MD14G1062600.v1.1
prunus_persica	Prupe.7G072600_v2.0.a1 Prupe.7G072700_v2.0.a1 Prupe.7G072700_v2.0.a1
pyrus_communis	pycom14g05040
rosa_chinensis	RchiOBHm_Chr3g0480401 RchiOBHm_Chr3g0480411
rosa_laevigata	RLG00000023478 RLG00000023480 RLG00000023484 RLG00000023486
rosa_multiflora	Rmu_sc0002205.1_g000006 Rmu_sc0002205.1_g000018 Rmu_sc0002205.1_g000023 Rmu_sc0003742.1_g000007 Rmu_sc0006555.1_g000004 Rmu_sc0010988.1_g000004
rosa_roxburghii	Rroxscaffold_6G00401380 Rroxscaffold_6G00401390 Rroxscaffold_6G00401400
rosa_rugosa	Rorug03G0183600.1 Rorug03G0183700
rosa_samantha	Rh3AG235100 Rh3AG235200 Rh3BG267800 Rh3BG268000 Rh3BG268100 Rh3CG265000 Rh3CG265200 Rh3DG260900 Rh3DG261100 Rh5BG519600 Rh5CG543500
rosa_wichuraiana	Rw3G021110 Rw5G046270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	74, 411
AccI	GTMKAC	1 cut(s)	189
AccII	CGCG	1 cut(s)	377
AciI	CCGC	6 cut(s)	5, 94, 217, 372, 375, 577
AclWI	GGATC	3 cut(s)	217, 261, 944
AcuI	CTGAAG	1 cut(s)	365
AcyI	GRCGYC	3 cut(s)	75, 186, 412
AfaI	GTAC	4 cut(s)	155, 278, 341, 944
AfiI	CCNNNNNNNGG	2 cut(s)	202, 650
AflIII	ACRYGT	2 cut(s)	150, 461
AgsI	TTSAA	4 cut(s)	67, 298, 523, 700
AjnI	CCWGG	4 cut(s)	195, 201, 733, 794
AluBI	AGCT	3 cut(s)	268, 294, 458
AluI	AGCT	3 cut(s)	268, 294, 458
Alw21I	GWGCWC	1 cut(s)	12
AlwI	GGATC	3 cut(s)	217, 261, 944
AoxI	GGCC	4 cut(s)	199, 204, 716, 819
ApeKI	GCWGC	6 cut(s)	96, 368, 591, 958, 961, 964
AspLEI	GCGC	4 cut(s)	77, 162, 379, 414
AspS9I	GGNCC	3 cut(s)	199, 205, 819
AsuC2I	CCSGG	1 cut(s)	183
AsuHPI	GGTGA	3 cut(s)	166, 426, 935
BanI	GGYRCC	2 cut(s)	74, 411
Bbv12I	GWGCWC	1 cut(s)	12
BbvCI	CCTCAGC	1 cut(s)	954
BbvI	GCAGC	5 cut(s)	83, 355, 603, 970, 973
BccI	CCATC	1 cut(s)	425
BceAI	ACGGC	2 cut(s)	567, 711
BciT130I	CCWGG	4 cut(s)	197, 203, 735, 796
BclI	TGATCA	1 cut(s)	937
BcnI	CCSGG	1 cut(s)	183
BfaI	CTAG	1 cut(s)	720
BfoI	RGCGCY	3 cut(s)	78, 163, 415
BglI	GCCNNNNNGGC	1 cut(s)	87
BisI	GCNGC	8 cut(s)	97, 369, 372, 375, 592, 959, 962, 965
BlpI	GCTNAGC	1 cut(s)	269
BlsI	GCNGC	8 cut(s)	98, 370, 373, 376, 593, 960, 963, 966
BmcAI	AGTACT	1 cut(s)	944
Bme1390I	CCNGG	5 cut(s)	183, 197, 203, 735, 796
BmgT120I	GGNCC	3 cut(s)	199, 205, 819
BmiI	GGNNCC	3 cut(s)	76, 413, 581
BmrFI	CCNGG	5 cut(s)	183, 197, 203, 735, 796
BmrI	ACTGGG	1 cut(s)	402
BmsI	GCATC	3 cut(s)	26, 132, 625
BmuI	ACTGGG	1 cut(s)	402
BpmI	CTGGAG	2 cut(s)	774, 885
Bpu10I	CCTNAGC	1 cut(s)	954
Bpu1102I	GCTNAGC	1 cut(s)	269
BpuMI	CCSGG	1 cut(s)	183
Bsa29I	ATCGAT	1 cut(s)	20
BsaHI	GRCGYC	3 cut(s)	75, 186, 412
BsaJI	CCNNGG	4 cut(s)	181, 195, 196, 795
BsaXI	ACNNNNNCTCC	2 cut(s)	571, 601
Bsc4I	CCNNNNNNNGG	2 cut(s)	202, 650
Bse1I	ACTGG	2 cut(s)	397, 437
Bse3DI	GCAATG	1 cut(s)	839
BseBI	CCWGG	4 cut(s)	197, 203, 735, 796
BseCI	ATCGAT	1 cut(s)	20
BseDI	CCNNGG	4 cut(s)	181, 195, 196, 795
BseLI	CCNNNNNNNGG	2 cut(s)	202, 650
BseMI	GCAATG	1 cut(s)	839
BseMII	CTCAG	2 cut(s)	260, 968
BseNI	ACTGG	2 cut(s)	397, 437
BseRI	GAGGAG	5 cut(s)	131, 278, 559, 687, 690
BseXI	GCAGC	5 cut(s)	83, 355, 603, 970, 973
BseYI	CCCAGC	1 cut(s)	119
Bsh1236I	CGCG	1 cut(s)	377
Bsh1285I	CGRYCG	1 cut(s)	94
BshFI	GGCC	4 cut(s)	201, 206, 718, 821
BshNI	GGYRCC	2 cut(s)	74, 411
BshVI	ATCGAT	1 cut(s)	20
BsiEI	CGRYCG	1 cut(s)	94
BsiHKAI	GWGCWC	1 cut(s)	12
BsiSI	CCGG	1 cut(s)	183
BslI	CCNNNNNNNGG	2 cut(s)	202, 650
BsnI	GGCC	4 cut(s)	201, 206, 718, 821
Bsp1286I	GDGCHC	1 cut(s)	12
Bsp143I	GATC	8 cut(s)	21, 69, 222, 253, 285, 691, 937, 949
Bsp1720I	GCTNAGC	1 cut(s)	269
BspACI	CCGC	6 cut(s)	5, 94, 217, 372, 375, 577
BspANI	GGCC	4 cut(s)	201, 206, 718, 821
BspCNI	CTCAG	2 cut(s)	261, 967
BspDI	ATCGAT	1 cut(s)	20
BspFNI	CGCG	1 cut(s)	377
BspLI	GGNNCC	3 cut(s)	76, 413, 581
BspPI	GGATC	3 cut(s)	217, 261, 944
BspT107I	GGYRCC	2 cut(s)	74, 411
BsrDI	GCAATG	1 cut(s)	839
BsrI	ACTGG	2 cut(s)	397, 437
BssECI	CCNNGG	4 cut(s)	181, 195, 196, 795
BssMI	GATC	8 cut(s)	21, 69, 222, 253, 285, 691, 937, 949
BssNI	GRCGYC	3 cut(s)	75, 186, 412
Bst2UI	CCWGG	4 cut(s)	197, 203, 735, 796
Bst6I	CTCTTC	1 cut(s)	664
BstACI	GRCGYC	3 cut(s)	75, 186, 412
BstC8I	GCNNGC	1 cut(s)	79
BstDEI	CTNAG	2 cut(s)	269, 954
BstFNI	CGCG	1 cut(s)	377
BstH2I	RGCGCY	3 cut(s)	78, 163, 415
BstHHI	GCGC	4 cut(s)	77, 162, 379, 414
BstKTI	GATC	8 cut(s)	24, 72, 225, 256, 288, 694, 940, 952
BstMBI	GATC	8 cut(s)	21, 69, 222, 253, 285, 691, 937, 949
BstMCI	CGRYCG	1 cut(s)	94
BstMWI	GCNNNNNNNGC	8 cut(s)	87, 96, 102, 374, 588, 597, 964, 970
BstNI	CCWGG	4 cut(s)	197, 203, 735, 796
BstNSI	RCATGY	3 cut(s)	154, 368, 465
BstSCI	CCNGG	5 cut(s)	181, 195, 201, 733, 794
BstUI	CGCG	1 cut(s)	377
BstV1I	GCAGC	5 cut(s)	83, 355, 603, 970, 973
BstX2I	RGATCY	2 cut(s)	222, 253
BstXI	CCANNNNNNTGG	1 cut(s)	329
BstYI	RGATCY	2 cut(s)	222, 253
Bsu15I	ATCGAT	1 cut(s)	20
BsuRI	GGCC	4 cut(s)	201, 206, 718, 821
BsuTUI	ATCGAT	1 cut(s)	20
BtsI	GCAGTG	1 cut(s)	811
BtsIMutI	CAGTG	3 cut(s)	390, 444, 811
Cac8I	GCNNGC	1 cut(s)	79
CfoI	GCGC	4 cut(s)	77, 162, 379, 414
Cfr13I	GGNCC	3 cut(s)	199, 205, 819
ClaI	ATCGAT	1 cut(s)	20
CseI	GACGC	2 cut(s)	175, 629
Csp6I	GTAC	4 cut(s)	154, 277, 340, 943
CspCI	CAANNNNNGTGG	2 cut(s)	478, 513
CviAII	CATG	7 cut(s)	86, 151, 325, 365, 462, 514, 875
CviQI	GTAC	4 cut(s)	154, 277, 340, 943
DdeI	CTNAG	2 cut(s)	269, 954
DinI	GGCGCC	2 cut(s)	76, 413
DpnI	GATC	8 cut(s)	23, 71, 224, 255, 287, 693, 939, 951
DpnII	GATC	8 cut(s)	21, 69, 222, 253, 285, 691, 937, 949
Eam1104I	CTCTTC	1 cut(s)	664
EarI	CTCTTC	1 cut(s)	664
EciI	GGCGGA	2 cut(s)	20, 592
Eco147I	AGGCCT	1 cut(s)	718
Eco57I	CTGAAG	1 cut(s)	365
EcoO109I	RGGNCCY	1 cut(s)	205
EcoRII	CCWGG	4 cut(s)	195, 201, 733, 794
EcoT22I	ATGCAT	1 cut(s)	519
EgeI	GGCGCC	2 cut(s)	76, 413
EheI	GGCGCC	2 cut(s)	76, 413
FaeI	CATG	7 cut(s)	89, 154, 328, 368, 465, 517, 878
FatI	CATG	7 cut(s)	85, 150, 324, 364, 461, 513, 874
FauI	CCCGC	1 cut(s)	224
FbaI	TGATCA	1 cut(s)	937
FblI	GTMKAC	1 cut(s)	189
Fnu4HI	GCNGC	8 cut(s)	97, 369, 372, 375, 592, 959, 962, 965
Fsp4HI	GCNGC	8 cut(s)	97, 369, 372, 375, 592, 959, 962, 965
FspBI	CTAG	1 cut(s)	720
GlaI	GCGC	4 cut(s)	76, 161, 378, 413
GluI	GCNGC	8 cut(s)	97, 369, 372, 375, 592, 959, 962, 965
GsaI	CCCAGC	1 cut(s)	123
GsuI	CTGGAG	2 cut(s)	774, 885
HaeII	RGCGCY	3 cut(s)	78, 163, 415
HaeIII	GGCC	4 cut(s)	201, 206, 718, 821
HapII	CCGG	1 cut(s)	183
HgaI	GACGC	2 cut(s)	175, 629
HhaI	GCGC	4 cut(s)	77, 162, 379, 414
Hin1I	GRCGYC	3 cut(s)	75, 186, 412
Hin1II	CATG	7 cut(s)	89, 154, 328, 368, 465, 517, 878
Hin6I	GCGC	4 cut(s)	75, 160, 377, 412
HinP1I	GCGC	4 cut(s)	75, 160, 377, 412
HincII	GTYRAC	3 cut(s)	49, 190, 427
HindII	GTYRAC	3 cut(s)	49, 190, 427
HinfI	GANTC	3 cut(s)	385, 784, 860
HpaI	GTTAAC	1 cut(s)	49
HpaII	CCGG	1 cut(s)	183
HphI	GGTGA	3 cut(s)	166, 426, 935
Hpy166II	GTNNAC	6 cut(s)	49, 190, 340, 427, 644, 740
Hpy188I	TCNGA	2 cut(s)	384, 560
Hpy188III	TCNNGA	4 cut(s)	67, 289, 635, 864
Hpy8I	GTNNAC	6 cut(s)	49, 190, 340, 427, 644, 740
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	5 cut(s)	31, 146, 567, 768, 810
HpyCH4IV	ACGT	2 cut(s)	342, 742
HpyCH4V	TGCA	4 cut(s)	407, 489, 507, 517
HpyF10VI	GCNNNNNNNGC	8 cut(s)	87, 96, 102, 374, 588, 597, 964, 970
HpyF3I	CTNAG	2 cut(s)	269, 954
HpySE526I	ACGT	2 cut(s)	342, 742
Hsp92I	GRCGYC	3 cut(s)	75, 186, 412
Hsp92II	CATG	7 cut(s)	89, 154, 328, 368, 465, 517, 878
HspAI	GCGC	4 cut(s)	75, 160, 377, 412
KasI	GGCGCC	2 cut(s)	74, 411
Ksp22I	TGATCA	1 cut(s)	937
KspAI	GTTAAC	1 cut(s)	49
Kzo9I	GATC	8 cut(s)	21, 69, 222, 253, 285, 691, 937, 949
LmnI	GCTCC	4 cut(s)	7, 265, 579, 637
Lsp1109I	GCAGC	5 cut(s)	83, 355, 603, 970, 973
LweI	GCATC	3 cut(s)	26, 132, 625
MaeI	CTAG	1 cut(s)	720
MaeII	ACGT	2 cut(s)	342, 742
MaeIII	GTNAC	1 cut(s)	439
MalI	GATC	8 cut(s)	23, 71, 224, 255, 287, 693, 939, 951
MboI	GATC	8 cut(s)	21, 69, 222, 253, 285, 691, 937, 949
MboII	GAAGA	8 cut(s)	16, 371, 488, 535, 538, 573, 681, 762
MflI	RGATCY	2 cut(s)	222, 253
MhlI	GDGCHC	1 cut(s)	12
MluCI	AATT	3 cut(s)	310, 508, 539
Mly113I	GGCGCC	2 cut(s)	75, 412
MlyI	GAGTC	1 cut(s)	793
MmeI	TCCRAC	1 cut(s)	171
Mph1103I	ATGCAT	1 cut(s)	519
MseI	TTAA	1 cut(s)	48
MslI	CAYNNNNRTG	1 cut(s)	621
MspA1I	CMGCKG	1 cut(s)	96
MspI	CCGG	1 cut(s)	183
MspR9I	CCNGG	5 cut(s)	183, 197, 203, 735, 796
MvaI	CCWGG	4 cut(s)	197, 203, 735, 796
MvnI	CGCG	1 cut(s)	377
MwoI	GCNNNNNNNGC	8 cut(s)	87, 96, 102, 374, 588, 597, 964, 970
NarI	GGCGCC	2 cut(s)	75, 412
NciI	CCSGG	1 cut(s)	183
NdeII	GATC	8 cut(s)	21, 69, 222, 253, 285, 691, 937, 949
NlaIII	CATG	7 cut(s)	89, 154, 328, 368, 465, 517, 878
NlaIV	GGNNCC	3 cut(s)	76, 413, 581
NmuCI	GTSAC	1 cut(s)	439
NsiI	ATGCAT	1 cut(s)	519
NspI	RCATGY	3 cut(s)	154, 368, 465
PasI	CCCWGGG	1 cut(s)	196
PceI	AGGCCT	1 cut(s)	718
PciI	ACATGT	2 cut(s)	150, 461
PcsI	WCGNNNNNNNCGW	1 cut(s)	285
PfeI	GAWTC	2 cut(s)	385, 860
PkrI	GCNGC	8 cut(s)	98, 370, 373, 376, 593, 960, 963, 966
PleI	GAGTC	1 cut(s)	792
PluTI	GGCGCC	2 cut(s)	78, 415
PpsI	GAGTC	1 cut(s)	792
PscI	ACATGT	2 cut(s)	150, 461
Psp6I	CCWGG	4 cut(s)	195, 201, 733, 794
PspFI	CCCAGC	1 cut(s)	119
PspGI	CCWGG	4 cut(s)	195, 201, 733, 794
PspN4I	GGNNCC	3 cut(s)	76, 413, 581
PspPI	GGNCC	3 cut(s)	199, 205, 819
PsrI	GAACNNNNNNTAC	2 cut(s)	332, 364
PsuI	RGATCY	2 cut(s)	222, 253
RsaI	GTAC	4 cut(s)	155, 278, 341, 944
RsaNI	GTAC	4 cut(s)	154, 277, 340, 943
RseI	CAYNNNNRTG	1 cut(s)	621
SalI	GTCGAC	1 cut(s)	188
SaqAI	TTAA	1 cut(s)	48
SatI	GCNGC	8 cut(s)	97, 369, 372, 375, 592, 959, 962, 965
Sau3AI	GATC	8 cut(s)	21, 69, 222, 253, 285, 691, 937, 949
Sau96I	GGNCC	3 cut(s)	199, 205, 819
ScaI	AGTACT	1 cut(s)	944
SchI	GAGTC	1 cut(s)	793
ScrFI	CCNGG	5 cut(s)	183, 197, 203, 735, 796
SduI	GDGCHC	1 cut(s)	12
SetI	ASST	9 cut(s)	270, 296, 345, 401, 460, 499, 655, 745, 858
SfaNI	GCATC	3 cut(s)	26, 132, 625
SfoI	GGCGCC	2 cut(s)	76, 413
SmiMI	CAYNNNNRTG	1 cut(s)	621
Sse9I	AATT	3 cut(s)	310, 508, 539
SseBI	AGGCCT	1 cut(s)	718
SsiI	CCGC	6 cut(s)	5, 94, 217, 372, 375, 577
SspDI	GGCGCC	2 cut(s)	74, 411
SspMI	CTAG	1 cut(s)	720
StuI	AGGCCT	1 cut(s)	718
StyD4I	CCNGG	5 cut(s)	181, 195, 201, 733, 794
TaiI	ACGT	2 cut(s)	345, 745
TaqI	TCGA	7 cut(s)	20, 189, 210, 237, 261, 288, 493
TaqII	GACCGA	1 cut(s)	458
TasI	AATT	3 cut(s)	310, 508, 539
TatI	WGTACW	1 cut(s)	942
TauI	GCSGC	2 cut(s)	374, 377
TfiI	GAWTC	2 cut(s)	385, 860
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TscAI	CASTG	3 cut(s)	397, 444, 811
TseFI	GTSAC	1 cut(s)	439
TseI	GCWGC	6 cut(s)	96, 368, 591, 958, 961, 964
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	3 cut(s)	489, 502, 927
TspGWI	ACGGA	3 cut(s)	294, 440, 663
TspRI	CASTG	3 cut(s)	397, 444, 811
XceI	RCATGY	3 cut(s)	154, 368, 465
XmiI	GTMKAC	1 cut(s)	189
XspI	CTAG	1 cut(s)	720
ZrmI	AGTACT	1 cut(s)	944
Zsp2I	ATGCAT	1 cut(s)	519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.