Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0002823

Physical Location & Seq

Genomic Coordinates Reverse (-)

24401361 .. 24402446

Gene Structure 1086 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023478

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGACCTCAAGCTCTCCACCCTCCTCTTCTTCACTCTATTATTGTGCACCATTCTTATCCCAACTCTCTCCGAACTCTGCAATCCACAGGACAAGAAAGTCCTCTTGGAAATCAAGACAGCCTTCAACAATCCCTACATCTTAATTTCATGGAACCCCAACGTCGACTGCTGTACTACCTGGAACAACGTCGAATGTGATCCCATCACCAACCACATCAACTCCCTCACCATCTTATCCTACGATCAAATCTCCGGCCAAATCCCTCCCCAAGTTGGTGATTTGCCATACCTCGAAACCCTCGTGATTCGCAAGCAACCAAATATAACTGGTCCTATCCAACCATCCATTGCCAAGCTCAAACATCTCAAGACGCTTAGACTCGGCTGGAACAACCTCTCAGGCTCAGTCCCGGACTTCATCAGCCAACTCAAGAACCTGACCTTCCTTGAACTCAACTACAACAACCTCACTGGCTCTATCCCCAGCTCACTTTCTCAGCTACCAAATTTGGCTTCTCTTCGTCTAGACCGTAACAAGCTCACAGGTCATATTCCGAGCTCATTCGGACAATTCGTTGGTGTCATTCCAGATCTCTACCTGTCCCACAACCAGCTCACAGGCAAGATACCAACCTCATTGGGCAAAATGGACTTCAGTCGCATAGACTTATCACGTAACATGCTCGAAGGTGATGCATCCTTCCTATTCGGGTTGAACAAGACAACCGAGATTGTAGATTTGTCCAGGAACATGCTGGAATTTGATCTGTCAAAGGCGGAGTTCACAAACAGCCTGATTTTACTAGATCTGAATCACAACAGGCTTACAGGGAGTATTCCGGAGGAGTTGACTGAAGTTAAGTTGCAGTTCTTCAATGTGAGCTATAACAGGTTGTGTGGTCAGATTCCGGTGGGTGGGAACTTGCAGAACTTCGACAACACATCGTATTTCCATAACCGGTGCCTCTGCGGTACTCCACTCCCAAGCTGCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005911 GO:0008150 GO:0009505 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0030234 GO:0030312 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0050790 GO:0055044 GO:0065007 GO:0065009 GO:0071944 GO:0090353 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

333

Amino Acids

37.17

Weight (kDa)

6.3

Isoelectric Point (pI)

39.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	29 - 67	3.7e-10	Leucine rich repeat N-terminal domain
LRR_14	PF23598	71 - 177	2.2e-08	Leucine-rich repeat region
LRR_8	PF13855	122 - 181	3.1e-08	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06860 AT5G06870
fragaria_vesca	FvH4_6g22790
malus_domestica	MD14G1062500.v1.1 MD14G1062600.v1.1
prunus_persica	Prupe.7G072600_v2.0.a1 Prupe.7G072700_v2.0.a1 Prupe.7G072700_v2.0.a1
pyrus_communis	pycom14g05040
rosa_chinensis	RchiOBHm_Chr3g0480401 RchiOBHm_Chr3g0480411
rosa_laevigata	RLG00000023478 RLG00000023480 RLG00000023484 RLG00000023486
rosa_multiflora	Rmu_sc0002205.1_g000006 Rmu_sc0002205.1_g000018 Rmu_sc0002205.1_g000023 Rmu_sc0003742.1_g000007 Rmu_sc0006555.1_g000004 Rmu_sc0010988.1_g000004
rosa_roxburghii	Rroxscaffold_6G00401380 Rroxscaffold_6G00401390 Rroxscaffold_6G00401400
rosa_rugosa	Rorug03G0183600.1 Rorug03G0183700
rosa_samantha	Rh3AG235100 Rh3AG235200 Rh3BG267800 Rh3BG268000 Rh3BG268100 Rh3CG265000 Rh3CG265200 Rh3DG260900 Rh3DG261100 Rh5BG519600 Rh5CG543500
rosa_wichuraiana	Rw3G021110 Rw5G046270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	98
AccB1I	GGYRCC	1 cut(s)	963
AccI	GTMKAC	1 cut(s)	165
AccIII	TCCGGA	1 cut(s)	841
AciI	CCGC	2 cut(s)	779, 972
AclWI	GGATC	1 cut(s)	194
AcoI	YGGCCR	1 cut(s)	256
AcsI	RAATTY	2 cut(s)	508, 761
AcuI	CTGAAG	2 cut(s)	640, 876
AfaI	GTAC	2 cut(s)	175, 976
AfiI	CCNNNNNNNGG	2 cut(s)	275, 917
AgeI	ACCGGT	1 cut(s)	960
AgsI	TTSAA	4 cut(s)	127, 452, 718, 877
AjnI	CCWGG	2 cut(s)	179, 746
AjuI	GAANNNNNNNTTGG	4 cut(s)	89, 121, 499, 531
AluBI	AGCT	9 cut(s)	13, 358, 489, 502, 541, 561, 616, 885, 990
AluI	AGCT	9 cut(s)	13, 358, 489, 502, 541, 561, 616, 885, 990
Alw21I	GWGCWC	2 cut(s)	50, 563
Alw44I	GTGCAC	1 cut(s)	46
AlwI	GGATC	1 cut(s)	194
Aor13HI	TCCGGA	1 cut(s)	841
AoxI	GGCC	1 cut(s)	256
ApaLI	GTGCAC	1 cut(s)	46
ApeKI	GCWGC	1 cut(s)	990
ApoI	RAATTY	2 cut(s)	508, 761
AsiGI	ACCGGT	1 cut(s)	960
AspS9I	GGNCC	2 cut(s)	4, 332
AsuC2I	CCSGG	1 cut(s)	413
AsuHPI	GGTGA	4 cut(s)	199, 220, 290, 704
AvaII	GGWCC	2 cut(s)	4, 332
BaeGI	GKGCMC	1 cut(s)	50
BanI	GGYRCC	1 cut(s)	963
BanII	GRGCYC	1 cut(s)	563
BauI	CACGAG	1 cut(s)	302
Bbv12I	GWGCWC	2 cut(s)	50, 563
BbvI	GCAGC	1 cut(s)	977
BccI	CCATC	3 cut(s)	212, 239, 352
BcgI	CGANNNNNNTGC	2 cut(s)	677, 711
BciT130I	CCWGG	2 cut(s)	181, 748
BcnI	CCSGG	1 cut(s)	413
BfaI	CTAG	2 cut(s)	527, 806
BglII	AGATCT	2 cut(s)	592, 808
BisI	GCNGC	1 cut(s)	991
BlsI	GCNGC	1 cut(s)	992
Bme1390I	CCNGG	3 cut(s)	181, 413, 748
Bme18I	GGWCC	2 cut(s)	4, 332
BmgT120I	GGNCC	2 cut(s)	4, 332
BmiI	GGNNCC	2 cut(s)	155, 965
BmrFI	CCNGG	3 cut(s)	181, 413, 748
BmsI	GCATC	2 cut(s)	685, 707
BoxI	GACNNNNGTC	1 cut(s)	657
BpuEI	CTTGAG	2 cut(s)	353, 416
BpuMI	CCSGG	1 cut(s)	413
BsaAI	YACGTR	1 cut(s)	677
BsaBI	GATNNNNATC	1 cut(s)	813
BsaWI	WCCGGW	3 cut(s)	841, 910, 960
BsaXI	ACNNNNNCTCC	2 cut(s)	206, 236
Bsc4I	CCNNNNNNNGG	2 cut(s)	275, 917
Bse118I	RCCGGY	1 cut(s)	960
Bse1I	ACTGG	2 cut(s)	334, 478
Bse3DI	GCAATG	1 cut(s)	348
Bse8I	GATNNNNATC	1 cut(s)	813
BseAI	TCCGGA	1 cut(s)	841
BseBI	CCWGG	2 cut(s)	181, 748
BseGI	GGATG	2 cut(s)	344, 698
BseJI	GATNNNNATC	1 cut(s)	813
BseLI	CCNNNNNNNGG	2 cut(s)	275, 917
BseMI	GCAATG	1 cut(s)	348
BseMII	CTCAG	3 cut(s)	414, 420, 512
BseNI	ACTGG	2 cut(s)	334, 478
BseRI	GAGGAG	2 cut(s)	14, 860
BseSI	GKGCMC	1 cut(s)	50
BseXI	GCAGC	1 cut(s)	977
BseYI	CCCAGC	1 cut(s)	485
BshFI	GGCC	1 cut(s)	258
BshNI	GGYRCC	1 cut(s)	963
BshTI	ACCGGT	1 cut(s)	960
BsiHKAI	GWGCWC	2 cut(s)	50, 563
BsiSI	CCGG	5 cut(s)	255, 413, 842, 911, 961
BslFI	GGGAC	2 cut(s)	395, 589
BslI	CCNNNNNNNGG	2 cut(s)	275, 917
BsmFI	GGGAC	2 cut(s)	395, 589
BsnI	GGCC	1 cut(s)	258
Bsp1286I	GDGCHC	2 cut(s)	50, 563
Bsp13I	TCCGGA	1 cut(s)	841
Bsp143I	GATC	5 cut(s)	199, 244, 592, 766, 808
BspACI	CCGC	2 cut(s)	779, 972
BspANI	GGCC	1 cut(s)	258
BspCNI	CTCAG	3 cut(s)	413, 419, 511
BspEI	TCCGGA	1 cut(s)	841
BspLI	GGNNCC	2 cut(s)	155, 965
BspPI	GGATC	1 cut(s)	194
BspT107I	GGYRCC	1 cut(s)	963
BsrDI	GCAATG	1 cut(s)	348
BsrFI	RCCGGY	1 cut(s)	960
BsrI	ACTGG	2 cut(s)	334, 478
BssAI	RCCGGY	1 cut(s)	960
BssMI	GATC	5 cut(s)	199, 244, 592, 766, 808
BssSI	CACGAG	1 cut(s)	302
Bst2BI	CACGAG	1 cut(s)	302
Bst2UI	CCWGG	2 cut(s)	181, 748
Bst4CI	ACNGT	1 cut(s)	533
Bst6I	CTCTTC	2 cut(s)	32, 525
BstBAI	YACGTR	1 cut(s)	677
BstC8I	GCNNGC	1 cut(s)	314
BstDEI	CTNAG	4 cut(s)	377, 400, 406, 498
BstF5I	GGATG	2 cut(s)	344, 698
BstKTI	GATC	5 cut(s)	202, 247, 595, 769, 811
BstMBI	GATC	5 cut(s)	199, 244, 592, 766, 808
BstNI	CCWGG	2 cut(s)	181, 748
BstNSI	RCATGY	2 cut(s)	685, 757
BstPAI	GACNNNNGTC	1 cut(s)	657
BstSCI	CCNGG	3 cut(s)	179, 411, 746
BstSLI	GKGCMC	1 cut(s)	50
BstV1I	GCAGC	1 cut(s)	977
BstX2I	RGATCY	2 cut(s)	592, 808
BstYI	RGATCY	2 cut(s)	592, 808
BsuRI	GGCC	1 cut(s)	258
BtsCI	GGATG	2 cut(s)	344, 698
BtsIMutI	CAGTG	1 cut(s)	471
Cac8I	GCNNGC	1 cut(s)	314
Cfr10I	RCCGGY	1 cut(s)	960
Cfr13I	GGNCC	2 cut(s)	4, 332
CseI	GACGC	1 cut(s)	382
Csp6I	GTAC	2 cut(s)	174, 975
CspAI	ACCGGT	1 cut(s)	960
CviAII	CATG	3 cut(s)	150, 682, 754
CviQI	GTAC	2 cut(s)	174, 975
DdeI	CTNAG	4 cut(s)	377, 400, 406, 498
DpnI	GATC	5 cut(s)	201, 246, 594, 768, 810
DpnII	GATC	5 cut(s)	199, 244, 592, 766, 808
DrdI	GACNNNNNNGTC	1 cut(s)	98
DseDI	GACNNNNNNGTC	1 cut(s)	98
EaeI	YGGCCR	1 cut(s)	256
Eam1104I	CTCTTC	2 cut(s)	32, 525
EarI	CTCTTC	2 cut(s)	32, 525
EciI	GGCGGA	1 cut(s)	794
Ecl136II	GAGCTC	1 cut(s)	561
Eco24I	GRGCYC	1 cut(s)	563
Eco47I	GGWCC	2 cut(s)	4, 332
Eco53kI	GAGCTC	1 cut(s)	561
Eco57I	CTGAAG	2 cut(s)	640, 876
EcoICRI	GAGCTC	1 cut(s)	561
EcoRII	CCWGG	2 cut(s)	179, 746
EcoT22I	ATGCAT	1 cut(s)	700
EcoT38I	GRGCYC	1 cut(s)	563
FaeI	CATG	3 cut(s)	153, 685, 757
FaiI	YATR	9 cut(s)	151, 289, 326, 552, 665, 683, 755, 888, 957
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FaqI	GGGAC	2 cut(s)	395, 589
FatI	CATG	3 cut(s)	149, 681, 753
FblI	GTMKAC	1 cut(s)	165
Fnu4HI	GCNGC	1 cut(s)	991
FokI	GGATG	2 cut(s)	331, 685
FriOI	GRGCYC	1 cut(s)	563
Fsp4HI	GCNGC	1 cut(s)	991
FspBI	CTAG	2 cut(s)	527, 806
GluI	GCNGC	1 cut(s)	991
GsaI	CCCAGC	1 cut(s)	489
HaeIII	GGCC	1 cut(s)	258
HapII	CCGG	5 cut(s)	255, 413, 842, 911, 961
HgaI	GACGC	1 cut(s)	382
Hin1II	CATG	3 cut(s)	153, 685, 757
HincII	GTYRAC	2 cut(s)	166, 852
HindII	GTYRAC	2 cut(s)	166, 852
HinfI	GANTC	4 cut(s)	307, 381, 814, 907
HpaII	CCGG	5 cut(s)	255, 413, 842, 911, 961
HphI	GGTGA	4 cut(s)	199, 220, 290, 704
Hpy166II	GTNNAC	4 cut(s)	48, 166, 786, 852
Hpy188I	TCNGA	5 cut(s)	73, 558, 569, 813, 906
Hpy188III	TCNNGA	7 cut(s)	115, 304, 370, 433, 527, 590, 842
Hpy8I	GTNNAC	4 cut(s)	48, 166, 786, 852
Hpy99I	CGWCG	2 cut(s)	167, 194
HpyAV	CCTTC	4 cut(s)	133, 454, 683, 712
HpyCH4III	ACNGT	1 cut(s)	533
HpyCH4IV	ACGT	3 cut(s)	162, 189, 676
HpyCH4V	TGCA	6 cut(s)	48, 81, 698, 868, 928, 993
HpyF3I	CTNAG	4 cut(s)	377, 400, 406, 498
HpySE526I	ACGT	3 cut(s)	162, 189, 676
Hsp92II	CATG	3 cut(s)	153, 685, 757
Kpn2I	TCCGGA	1 cut(s)	841
Kzo9I	GATC	5 cut(s)	199, 244, 592, 766, 808
Lsp1109I	GCAGC	1 cut(s)	977
LweI	GCATC	2 cut(s)	685, 707
MaeI	CTAG	2 cut(s)	527, 806
MaeII	ACGT	3 cut(s)	162, 189, 676
MaeIII	GTNAC	2 cut(s)	533, 677
MalI	GATC	5 cut(s)	201, 246, 594, 768, 810
MboI	GATC	5 cut(s)	199, 244, 592, 766, 808
MboII	GAAGA	4 cut(s)	19, 22, 512, 865
MflI	RGATCY	2 cut(s)	592, 808
MhlI	GDGCHC	2 cut(s)	50, 563
MluCI	AATT	4 cut(s)	144, 508, 572, 761
MlyI	GAGTC	1 cut(s)	375
MmeI	TCCRAC	1 cut(s)	364
Mph1103I	ATGCAT	1 cut(s)	700
MroI	TCCGGA	1 cut(s)	841
MseI	TTAA	2 cut(s)	143, 861
MspI	CCGG	5 cut(s)	255, 413, 842, 911, 961
MspR9I	CCNGG	3 cut(s)	181, 413, 748
MvaI	CCWGG	2 cut(s)	181, 748
NciI	CCSGG	1 cut(s)	413
NdeII	GATC	5 cut(s)	199, 244, 592, 766, 808
NlaIII	CATG	3 cut(s)	153, 685, 757
NlaIV	GGNNCC	2 cut(s)	155, 965
NmeAIII	GCCGAG	1 cut(s)	363
NsiI	ATGCAT	1 cut(s)	700
NspI	RCATGY	2 cut(s)	685, 757
PcsI	WCGNNNNNNNCGW	3 cut(s)	300, 529, 573
PfeI	GAWTC	3 cut(s)	307, 814, 907
PfoI	TCCNGGA	2 cut(s)	411, 746
PinAI	ACCGGT	1 cut(s)	960
PkrI	GCNGC	1 cut(s)	992
PleI	GAGTC	1 cut(s)	375
PpsI	GAGTC	1 cut(s)	375
Ppu21I	YACGTR	1 cut(s)	677
PshAI	GACNNNNGTC	1 cut(s)	657
Psp124BI	GAGCTC	1 cut(s)	563
Psp6I	CCWGG	2 cut(s)	179, 746
PspFI	CCCAGC	1 cut(s)	485
PspGI	CCWGG	2 cut(s)	179, 746
PspN4I	GGNNCC	2 cut(s)	155, 965
PspPI	GGNCC	2 cut(s)	4, 332
PsuI	RGATCY	2 cut(s)	592, 808
RsaI	GTAC	2 cut(s)	175, 976
RsaNI	GTAC	2 cut(s)	174, 975
SacI	GAGCTC	1 cut(s)	563
SalI	GTCGAC	1 cut(s)	164
SaqAI	TTAA	2 cut(s)	143, 861
SatI	GCNGC	1 cut(s)	991
Sau3AI	GATC	5 cut(s)	199, 244, 592, 766, 808
Sau96I	GGNCC	2 cut(s)	4, 332
SchI	GAGTC	1 cut(s)	375
ScrFI	CCNGG	3 cut(s)	181, 413, 748
SduI	GDGCHC	2 cut(s)	50, 563
SfaNI	GCATC	2 cut(s)	685, 707
SinI	GGWCC	2 cut(s)	4, 332
SmlI	CTYRAG	3 cut(s)	8, 368, 431
SmoI	CTYRAG	3 cut(s)	8, 368, 431
Sse9I	AATT	4 cut(s)	144, 508, 572, 761
SsiI	CCGC	2 cut(s)	779, 972
SspMI	CTAG	2 cut(s)	527, 806
SstI	GAGCTC	1 cut(s)	563
StyD4I	CCNGG	3 cut(s)	179, 411, 746
TaaI	ACNGT	1 cut(s)	533
TaiI	ACGT	3 cut(s)	165, 192, 679
TaqI	TCGA	5 cut(s)	165, 192, 294, 687, 936
TasI	AATT	4 cut(s)	144, 508, 572, 761
TatI	WGTACW	1 cut(s)	173
TfiI	GAWTC	3 cut(s)	307, 814, 907
Tru1I	TTAA	2 cut(s)	143, 861
Tru9I	TTAA	2 cut(s)	143, 861
TscAI	CASTG	1 cut(s)	478
TseI	GCWGC	1 cut(s)	990
TspDTI	ATGAA	2 cut(s)	138, 409
TspRI	CASTG	1 cut(s)	478
VneI	GTGCAC	1 cut(s)	46
VpaK11BI	GGWCC	2 cut(s)	4, 332
XapI	RAATTY	2 cut(s)	508, 761
XbaI	TCTAGA	1 cut(s)	526
XceI	RCATGY	2 cut(s)	685, 757
XcmI	CCANNNNNNNNNTGG	1 cut(s)	754
XmiI	GTMKAC	1 cut(s)	165
XspI	CTAG	2 cut(s)	527, 806
Zsp2I	ATGCAT	1 cut(s)	700

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.