Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002823

Physical Location & Seq

Genomic Coordinates Forward (+)

2133918 .. 2135168

Gene Structure 1251 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G06870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGATAAGACAATGACACTGTTCTTGCTCTTGTCCACTCTCCTCCTCACGACTTCTTTAGCTAAAGATCTCTGTCATAAAGATGACAAAACTACCCTCCTCAAGATCAAGAAATCCCTAAACAACCCTTACCACCTCGCCTCATGGGATCCCAAAACCGACTGTTGCTCTTGGTACTGCCTCGAGTGCGGCGACGCTACTGTCAACCACCGTGTCACTTCCCTAATCATACAAGACGGCGAGATCTCCGGTCAGATCCCCCCTGAAGTCGGTGACTTACCGTATCTTACATCCCTTATCTTCCGCAAACTCACTAACCTCACTGGTCACATCCAACCCACTATCGCCAAGCTCAAGAACCTCACTTTTCTCAGACTAAGCTGGACCAATCTCACCGGTCCGGTTCCTGAGTTTCTGAGTCAGCTCAAGAATCTTGAGTACATTGACCTTTCCTTCAATGACCTCTCTGGTTCCATACCTAGTTCCCTCTCTTCATTACGTAAACTCGAGTATCTTGAACTTAGTAGGAACAAGCTTACAGGTCCGATACCAGAGTCATTTGGGACGTTTTCAGGAAAGGTCCCTAGTCTTTTCCTATCACACAACCAGCTCTCTGGTACTATACCAAAGTCACTAGGCAATCCCGACTTTTACCGCATCGATTTATCTCGGAACAAGCTTCAAGGCGATGCTTCAATCTTGTTTGGAGCTAAAAAAACAACATGGATCGTTGATATATCAAGAAACATGTTCCAGTTCGATCTCTCCAAGGTTAAGCTCGCTAAGACACTTAATAACTTGGACATGAATCACAATGGCATCACAGGGAGTATTCCGGCTGAGTGGAGCAAAGCTTATTTTCAGTTACTGAATGTTAGCTATAACAGACTGTGTGGACGCATCCCCAAAGGAGAGTATATTCAAAGATTTGATTCTTATTCCTTTTTCCACAACAAGTGTTTATGTGGTGCACCTCTTCCTAGTTGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005911 GO:0008150 GO:0009505 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0030234 GO:0030312 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0050790 GO:0055044 GO:0065007 GO:0065009 GO:0071944 GO:0090353 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

330

Amino Acids

37.07

Weight (kDa)

9.02

Isoelectric Point (pI)

28.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	26 - 63	1.2e-11	Leucine rich repeat N-terminal domain
LRR_14	PF23598	84 - 177	6e-07	Leucine-rich repeat region
LRR_8	PF13855	120 - 179	5e-08	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06860 AT5G06870
fragaria_vesca	FvH4_6g22790
malus_domestica	MD14G1062500.v1.1 MD14G1062600.v1.1
prunus_persica	Prupe.7G072600_v2.0.a1 Prupe.7G072700_v2.0.a1 Prupe.7G072700_v2.0.a1
pyrus_communis	pycom14g05040
rosa_chinensis	RchiOBHm_Chr3g0480401 RchiOBHm_Chr3g0480411
rosa_laevigata	RLG00000023478 RLG00000023480 RLG00000023484 RLG00000023486
rosa_multiflora	Rmu_sc0002205.1_g000006 Rmu_sc0002205.1_g000018 Rmu_sc0002205.1_g000023 Rmu_sc0003742.1_g000007 Rmu_sc0006555.1_g000004 Rmu_sc0010988.1_g000004
rosa_roxburghii	Rroxscaffold_6G00401380 Rroxscaffold_6G00401390 Rroxscaffold_6G00401400
rosa_rugosa	Rorug03G0183600.1 Rorug03G0183700
rosa_samantha	Rh3AG235100 Rh3AG235200 Rh3BG267800 Rh3BG268000 Rh3BG268100 Rh3CG265000 Rh3CG265200 Rh3DG260900 Rh3DG261100 Rh5BG519600 Rh5CG543500
rosa_wichuraiana	Rw3G021110 Rw5G046270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	200
AciI	CCGC	3 cut(s)	189, 304, 655
AclWI	GGATC	4 cut(s)	143, 156, 250, 734
AcuI	CTGAAG	1 cut(s)	285
AfaI	GTAC	3 cut(s)	176, 440, 619
AfiI	CCNNNNNNNGG	1 cut(s)	269
AflIII	ACRYGT	1 cut(s)	747
AgeI	ACCGGT	1 cut(s)	395
AgsI	TTSAA	5 cut(s)	457, 518, 683, 696, 923
Alw21I	GWGCWC	1 cut(s)	973
Alw44I	GTGCAC	1 cut(s)	969
AlwI	GGATC	4 cut(s)	143, 156, 250, 734
AlwNI	CAGNNNCTG	1 cut(s)	868
Ama87I	CYCGRG	2 cut(s)	182, 506
ApaLI	GTGCAC	1 cut(s)	969
AsiGI	ACCGGT	1 cut(s)	395
AspS9I	GGNCC	4 cut(s)	384, 398, 542, 580
AsuHPI	GGTGA	2 cut(s)	284, 385
AvaI	CYCGRG	2 cut(s)	182, 506
AvaII	GGWCC	4 cut(s)	384, 398, 542, 580
BaeGI	GKGCMC	1 cut(s)	973
BaeI	ACNNNNGTAYC	4 cut(s)	494, 527, 539, 572
BamHI	GGATCC	1 cut(s)	148
Bbv12I	GWGCWC	1 cut(s)	973
BceAI	ACGGC	1 cut(s)	253
BfaI	CTAG	4 cut(s)	480, 585, 635, 981
BglII	AGATCT	2 cut(s)	67, 243
BisI	GCNGC	1 cut(s)	190
BlsI	GCNGC	1 cut(s)	191
Bme18I	GGWCC	4 cut(s)	384, 398, 542, 580
BmeT110I	CYCGRG	2 cut(s)	182, 506
BmgT120I	GGNCC	4 cut(s)	384, 398, 542, 580
BmiI	GGNNCC	4 cut(s)	150, 405, 472, 582
BmsI	GCATC	4 cut(s)	666, 679, 828, 909
BpuEI	CTTGAG	4 cut(s)	86, 338, 410, 455
Bsa29I	ATCGAT	1 cut(s)	660
BsaAI	YACGTR	1 cut(s)	500
BsaJI	CCNNGG	1 cut(s)	768
BsaWI	WCCGGW	3 cut(s)	248, 395, 400
Bsc4I	CCNNNNNNNGG	1 cut(s)	269
Bse118I	RCCGGY	1 cut(s)	395
Bse1I	ACTGG	2 cut(s)	328, 754
BseCI	ATCGAT	1 cut(s)	660
BseDI	CCNNGG	1 cut(s)	768
BseGI	GGATG	3 cut(s)	290, 330, 900
BseLI	CCNNNNNNNGG	1 cut(s)	269
BseMII	CTCAG	4 cut(s)	385, 399, 407, 831
BseNI	ACTGG	2 cut(s)	328, 754
BseRI	GAGGAG	3 cut(s)	32, 35, 89
BseSI	GKGCMC	1 cut(s)	973
BshTI	ACCGGT	1 cut(s)	395
BshVI	ATCGAT	1 cut(s)	660
BsiHKAI	GWGCWC	1 cut(s)	973
BsiHKCI	CYCGRG	2 cut(s)	182, 506
BsiSI	CCGG	4 cut(s)	249, 396, 401, 836
BslFI	GGGAC	2 cut(s)	566, 577
BslI	CCNNNNNNNGG	1 cut(s)	269
BsmFI	GGGAC	2 cut(s)	566, 577
BsoBI	CYCGRG	2 cut(s)	182, 506
Bsp1286I	GDGCHC	1 cut(s)	973
Bsp143I	GATC	7 cut(s)	67, 105, 148, 243, 255, 726, 760
BspACI	CCGC	3 cut(s)	189, 304, 655
BspCNI	CTCAG	4 cut(s)	384, 400, 408, 832
BspDI	ATCGAT	1 cut(s)	660
BspLI	GGNNCC	4 cut(s)	150, 405, 472, 582
BspPI	GGATC	4 cut(s)	143, 156, 250, 734
BsrFI	RCCGGY	1 cut(s)	395
BsrI	ACTGG	2 cut(s)	328, 754
BssAI	RCCGGY	1 cut(s)	395
BssECI	CCNNGG	1 cut(s)	768
BssMI	GATC	7 cut(s)	67, 105, 148, 243, 255, 726, 760
BssT1I	CCWWGG	1 cut(s)	768
Bst4CI	ACNGT	6 cut(s)	21, 164, 202, 212, 282, 891
Bst6I	CTCTTC	2 cut(s)	496, 981
BstBAI	YACGTR	1 cut(s)	500
BstC8I	GCNNGC	1 cut(s)	780
BstDEI	CTNAG	7 cut(s)	371, 377, 408, 416, 521, 783, 840
BstF5I	GGATG	3 cut(s)	290, 330, 900
BstKTI	GATC	7 cut(s)	70, 108, 151, 246, 258, 729, 763
BstMBI	GATC	7 cut(s)	67, 105, 148, 243, 255, 726, 760
BstMWI	GCNNNNNNNGC	1 cut(s)	186
BstNSI	RCATGY	1 cut(s)	751
BstSLI	GKGCMC	1 cut(s)	973
BstSNI	TACGTA	1 cut(s)	500
BstX2I	RGATCY	4 cut(s)	67, 148, 243, 255
BstXI	CCANNNNNNTGG	1 cut(s)	614
BstYI	RGATCY	4 cut(s)	67, 148, 243, 255
Bsu15I	ATCGAT	1 cut(s)	660
BsuTUI	ATCGAT	1 cut(s)	660
BtgZI	GCGATG	1 cut(s)	702
BtsCI	GGATG	3 cut(s)	290, 330, 900
BtsIMutI	CAGTG	2 cut(s)	17, 321
Cac8I	GCNNGC	1 cut(s)	780
CaiI	CAGNNNCTG	1 cut(s)	868
Cfr10I	RCCGGY	1 cut(s)	395
Cfr13I	GGNCC	4 cut(s)	384, 398, 542, 580
ClaI	ATCGAT	1 cut(s)	660
CpoI	CGGWCCG	1 cut(s)	398
CseI	GACGC	2 cut(s)	203, 906
Csp6I	GTAC	3 cut(s)	175, 439, 618
CspAI	ACCGGT	1 cut(s)	395
CspI	CGGWCCG	1 cut(s)	398
CviAII	CATG	4 cut(s)	144, 723, 748, 805
CviQI	GTAC	3 cut(s)	175, 439, 618
DdeI	CTNAG	7 cut(s)	371, 377, 408, 416, 521, 783, 840
DpnI	GATC	7 cut(s)	69, 107, 150, 245, 257, 728, 762
DpnII	GATC	7 cut(s)	67, 105, 148, 243, 255, 726, 760
DrdI	GACNNNNNNGTC	1 cut(s)	200
DseDI	GACNNNNNNGTC	1 cut(s)	200
Eam1104I	CTCTTC	2 cut(s)	496, 981
EarI	CTCTTC	2 cut(s)	496, 981
Eco105I	TACGTA	1 cut(s)	500
Eco130I	CCWWGG	1 cut(s)	768
Eco47I	GGWCC	4 cut(s)	384, 398, 542, 580
Eco57I	CTGAAG	1 cut(s)	285
Eco88I	CYCGRG	2 cut(s)	182, 506
EcoO109I	RGGNCCY	1 cut(s)	580
EcoT14I	CCWWGG	1 cut(s)	768
ErhI	CCWWGG	1 cut(s)	768
FaeI	CATG	4 cut(s)	147, 726, 751, 808
FaqI	GGGAC	2 cut(s)	566, 577
FatI	CATG	4 cut(s)	143, 722, 747, 804
Fnu4HI	GCNGC	1 cut(s)	190
FokI	GGATG	3 cut(s)	277, 317, 887
Fsp4HI	GCNGC	1 cut(s)	190
FspBI	CTAG	4 cut(s)	480, 585, 635, 981
GluI	GCNGC	1 cut(s)	190
HapII	CCGG	4 cut(s)	249, 396, 401, 836
HgaI	GACGC	2 cut(s)	203, 906
Hin1II	CATG	4 cut(s)	147, 726, 751, 808
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HindIII	AAGCTT	3 cut(s)	533, 677, 852
HinfI	GANTC	5 cut(s)	418, 430, 554, 808, 932
HpaII	CCGG	4 cut(s)	249, 396, 401, 836
HphI	GGTGA	2 cut(s)	284, 385
Hpy166II	GTNNAC	5 cut(s)	36, 205, 503, 896, 971
Hpy188I	TCNGA	5 cut(s)	255, 374, 417, 546, 672
Hpy8I	GTNNAC	5 cut(s)	36, 205, 503, 896, 971
Hpy99I	CGWCG	1 cut(s)	197
HpyAV	CCTTC	1 cut(s)	463
HpyCH4III	ACNGT	6 cut(s)	21, 164, 202, 212, 282, 891
HpyCH4IV	ACGT	2 cut(s)	499, 566
HpyCH4V	TGCA	2 cut(s)	971, 987
HpyF10VI	GCNNNNNNNGC	1 cut(s)	186
HpyF3I	CTNAG	7 cut(s)	371, 377, 408, 416, 521, 783, 840
HpySE526I	ACGT	2 cut(s)	499, 566
Hsp92II	CATG	4 cut(s)	147, 726, 751, 808
Kzo9I	GATC	7 cut(s)	67, 105, 148, 243, 255, 726, 760
LmnI	GCTCC	2 cut(s)	707, 846
LweI	GCATC	4 cut(s)	666, 679, 828, 909
MaeI	CTAG	4 cut(s)	480, 585, 635, 981
MaeII	ACGT	2 cut(s)	499, 566
MaeIII	GTNAC	5 cut(s)	214, 272, 326, 630, 864
MalI	GATC	7 cut(s)	69, 107, 150, 245, 257, 728, 762
MboI	GATC	7 cut(s)	67, 105, 148, 243, 255, 726, 760
MboII	GAAGA	3 cut(s)	292, 483, 968
MflI	RGATCY	4 cut(s)	67, 148, 243, 255
MhlI	GDGCHC	1 cut(s)	973
MlyI	GAGTC	2 cut(s)	427, 563
MmeI	TCCRAC	1 cut(s)	358
MseI	TTAA	2 cut(s)	774, 792
MslI	CAYNNNNRTG	1 cut(s)	81
MspI	CCGG	4 cut(s)	249, 396, 401, 836
MwoI	GCNNNNNNNGC	1 cut(s)	186
NdeII	GATC	7 cut(s)	67, 105, 148, 243, 255, 726, 760
NlaIII	CATG	4 cut(s)	147, 726, 751, 808
NlaIV	GGNNCC	4 cut(s)	150, 405, 472, 582
NmuCI	GTSAC	4 cut(s)	214, 272, 326, 630
NspI	RCATGY	1 cut(s)	751
PaeR7I	CTCGAG	2 cut(s)	182, 506
PciI	ACATGT	1 cut(s)	747
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PfeI	GAWTC	3 cut(s)	430, 808, 932
PinAI	ACCGGT	1 cut(s)	395
PkrI	GCNGC	1 cut(s)	191
PleI	GAGTC	2 cut(s)	426, 562
PpsI	GAGTC	2 cut(s)	426, 562
Ppu21I	YACGTR	1 cut(s)	500
PpuMI	RGGWCCY	1 cut(s)	580
PscI	ACATGT	1 cut(s)	747
Psp5II	RGGWCCY	1 cut(s)	580
PspN4I	GGNNCC	4 cut(s)	150, 405, 472, 582
PspPI	GGNCC	4 cut(s)	384, 398, 542, 580
PspPPI	RGGWCCY	1 cut(s)	580
PspXI	VCTCGAGB	2 cut(s)	182, 506
PstNI	CAGNNNCTG	1 cut(s)	868
PsuI	RGATCY	4 cut(s)	67, 148, 243, 255
RsaI	GTAC	3 cut(s)	176, 440, 619
RsaNI	GTAC	3 cut(s)	175, 439, 618
RseI	CAYNNNNRTG	1 cut(s)	81
Rsr2I	CGGWCCG	1 cut(s)	398
RsrII	CGGWCCG	1 cut(s)	398
SaqAI	TTAA	2 cut(s)	774, 792
SatI	GCNGC	1 cut(s)	190
Sau3AI	GATC	7 cut(s)	67, 105, 148, 243, 255, 726, 760
Sau96I	GGNCC	4 cut(s)	384, 398, 542, 580
SchI	GAGTC	2 cut(s)	427, 563
SduI	GDGCHC	1 cut(s)	973
SfaNI	GCATC	4 cut(s)	666, 679, 828, 909
Sfr274I	CTCGAG	2 cut(s)	182, 506
SinI	GGWCC	4 cut(s)	384, 398, 542, 580
SlaI	CTCGAG	2 cut(s)	182, 506
SmiMI	CAYNNNNRTG	1 cut(s)	81
SmlI	CTYRAG	6 cut(s)	101, 182, 353, 425, 434, 506
SmoI	CTYRAG	6 cut(s)	101, 182, 353, 425, 434, 506
SnaBI	TACGTA	1 cut(s)	500
SsiI	CCGC	3 cut(s)	189, 304, 655
SspMI	CTAG	4 cut(s)	480, 585, 635, 981
StyI	CCWWGG	1 cut(s)	768
TaaI	ACNGT	6 cut(s)	21, 164, 202, 212, 282, 891
TaiI	ACGT	2 cut(s)	502, 569
TaqI	TCGA	4 cut(s)	183, 507, 660, 759
TatI	WGTACW	1 cut(s)	438
TauI	GCSGC	1 cut(s)	192
TfiI	GAWTC	3 cut(s)	430, 808, 932
Tru1I	TTAA	2 cut(s)	774, 792
Tru9I	TTAA	2 cut(s)	774, 792
TscAI	CASTG	2 cut(s)	24, 328
TseFI	GTSAC	4 cut(s)	214, 272, 326, 630
Tsp45I	GTSAC	4 cut(s)	214, 272, 326, 630
TspDTI	ATGAA	2 cut(s)	483, 821
TspRI	CASTG	2 cut(s)	24, 328
VneI	GTGCAC	1 cut(s)	969
VpaK11BI	GGWCC	4 cut(s)	384, 398, 542, 580
XceI	RCATGY	1 cut(s)	751
XhoI	CTCGAG	2 cut(s)	182, 506
XspI	CTAG	4 cut(s)	480, 585, 635, 981

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.