Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002205.1

Orthogroup ID

OG0002823

Physical Location & Seq

Genomic Coordinates Forward (+)

94127 .. 95249

Gene Structure 1123 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002205.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

atgatccccacttctcacccaaaacccaaaatcatggacctcaagctctccaccctcctctgcttcactctattattgtgcaccattcttatcccaactctctccgaactctgcaatccacaggacaagaaagtcctcttgcaaatcaagacagccttcaacaatccctacatcttaatttcatggaaccccgacgtcgactgctgtactacctggaacaacgtcgaatgtgatcccatcaccaaccgcatcaactccctcaccatcttatcctacgatcaaatctccggccaaatccctccccaagttggtgatttgccatacctcgaaactctcgtgattcgcaagcaaccaaatataaccggtcctatccaaccctccattgccaagctcaaacatctcaagacgcttagactcggctggaacaacctcacaggctcagtcccggacttcatcagccaactcaagaacctgaccttccttgaactctactacaacaacctcactggctctatccccagctcactttctcagctaccaaatttggcttctcttcgtctagaccgtaacaagttcacgggtcatattccgagctcattcggacaattcgttggtgtcattccagatctctacctctcccacaaccagctcacaggcaagataccaacctcattgggcaaaatggacttcaatcgcatagacttgtctcgtaacatgctcgaaggtgatgcatccttcctattcgggttgaacaagacaaccgagattgtagatttgtccaggaacatgctggaatttgatctgtcaaaggcggagttcacaaacagcctgattttactagatctgaatcacaacaggcttacagggagtatcccggagcagttgactgaagttaagttgcagttcttcaatgtgagctataacaggttgtgtggtcagattccggtgggtgggaacttgcagaacttcgacaacacgtcgtatttccataaccggtgcctctgcggtaccccactcccaagctgcaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005911 GO:0008150 GO:0009505 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0030234 GO:0030312 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0050790 GO:0055044 GO:0065007 GO:0065009 GO:0071944 GO:0090353 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

343

Amino Acids

38.5

Weight (kDa)

7.99

Isoelectric Point (pI)

36.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06860 AT5G06870
fragaria_vesca	FvH4_6g22790
malus_domestica	MD14G1062500.v1.1 MD14G1062600.v1.1
prunus_persica	Prupe.7G072600_v2.0.a1 Prupe.7G072700_v2.0.a1 Prupe.7G072700_v2.0.a1
pyrus_communis	pycom14g05040
rosa_chinensis	RchiOBHm_Chr3g0480401 RchiOBHm_Chr3g0480411
rosa_laevigata	RLG00000023478 RLG00000023480 RLG00000023484 RLG00000023486
rosa_multiflora	Rmu_sc0002205.1_g000006 Rmu_sc0002205.1_g000018 Rmu_sc0002205.1_g000023 Rmu_sc0003742.1_g000007 Rmu_sc0006555.1_g000004 Rmu_sc0010988.1_g000004
rosa_roxburghii	Rroxscaffold_6G00401380 Rroxscaffold_6G00401390 Rroxscaffold_6G00401400
rosa_rugosa	Rorug03G0183600.1 Rorug03G0183700
rosa_samantha	Rh3AG235100 Rh3AG235200 Rh3BG267800 Rh3BG268000 Rh3BG268100 Rh3CG265000 Rh3CG265200 Rh3DG260900 Rh3DG261100 Rh5BG519600 Rh5CG543500
rosa_wichuraiana	Rw3G021110 Rw5G046270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	131
AatII	GACGTC	1 cut(s)	198
Acc65I	GGTACC	1 cut(s)	1007
AccB1I	GGYRCC	2 cut(s)	996, 1007
AccI	GTMKAC	1 cut(s)	198
AciI	CCGC	3 cut(s)	247, 812, 1005
AclWI	GGATC	1 cut(s)	227
AcoI	YGGCCR	1 cut(s)	289
AcsI	RAATTY	2 cut(s)	541, 794
AcuI	CTGAAG	1 cut(s)	909
AcyI	GRCGYC	1 cut(s)	195
AfaI	GTAC	2 cut(s)	208, 1009
AfiI	CCNNNNNNNGG	2 cut(s)	308, 950
AflIII	ACRYGT	1 cut(s)	975
AgeI	ACCGGT	2 cut(s)	362, 993
AgsI	TTSAA	5 cut(s)	160, 485, 691, 751, 910
AhdI	GACNNNNNGTC	1 cut(s)	976
AjiI	CACGTC	1 cut(s)	978
AjnI	CCWGG	2 cut(s)	212, 779
AjuI	GAANNNNNNNTTGG	2 cut(s)	532, 564
AluBI	AGCT	8 cut(s)	46, 391, 522, 535, 594, 649, 918, 1023
AluI	AGCT	8 cut(s)	46, 391, 522, 535, 594, 649, 918, 1023
Alw21I	GWGCWC	2 cut(s)	83, 596
Alw26I	GTCTC	1 cut(s)	711
Alw44I	GTGCAC	1 cut(s)	79
AlwI	GGATC	1 cut(s)	227
AoxI	GGCC	1 cut(s)	289
ApaLI	GTGCAC	1 cut(s)	79
ApeKI	GCWGC	1 cut(s)	1023
ApoI	RAATTY	2 cut(s)	541, 794
AsiGI	ACCGGT	2 cut(s)	362, 993
Asp718I	GGTACC	1 cut(s)	1007
AspS9I	GGNCC	2 cut(s)	37, 365
AsuC2I	CCSGG	2 cut(s)	446, 875
AsuHPI	GGTGA	5 cut(s)	8, 232, 253, 323, 737
AvaII	GGWCC	2 cut(s)	37, 365
BaeGI	GKGCMC	1 cut(s)	83
BanI	GGYRCC	2 cut(s)	996, 1007
BanII	GRGCYC	1 cut(s)	596
BauI	CACGAG	1 cut(s)	335
Bbv12I	GWGCWC	2 cut(s)	83, 596
BbvI	GCAGC	1 cut(s)	1010
BccI	CCATC	2 cut(s)	245, 272
BcgI	CGANNNNNNTGC	2 cut(s)	710, 744
BciT130I	CCWGG	2 cut(s)	214, 781
BciVI	GTATCC	1 cut(s)	881
BcnI	CCSGG	2 cut(s)	446, 875
BcoDI	GTCTC	1 cut(s)	711
BfaI	CTAG	2 cut(s)	560, 839
BfuI	GTATCC	1 cut(s)	881
BglII	AGATCT	2 cut(s)	625, 841
BisI	GCNGC	1 cut(s)	1024
BlsI	GCNGC	1 cut(s)	1025
Bme1390I	CCNGG	4 cut(s)	214, 446, 781, 875
Bme18I	GGWCC	2 cut(s)	37, 365
BmeRI	GACNNNNNGTC	1 cut(s)	976
BmgBI	CACGTC	1 cut(s)	978
BmgT120I	GGNCC	2 cut(s)	37, 365
BmiI	GGNNCC	3 cut(s)	188, 998, 1009
BmrFI	CCNGG	4 cut(s)	214, 446, 781, 875
BmsI	GCATC	3 cut(s)	258, 718, 740
BpuEI	CTTGAG	3 cut(s)	26, 386, 449
BpuMI	CCSGG	2 cut(s)	446, 875
BsaBI	GATNNNNATC	1 cut(s)	846
BsaHI	GRCGYC	1 cut(s)	195
BsaWI	WCCGGW	3 cut(s)	362, 943, 993
Bsc4I	CCNNNNNNNGG	2 cut(s)	308, 950
Bse118I	RCCGGY	2 cut(s)	362, 993
Bse1I	ACTGG	1 cut(s)	511
Bse3DI	GCAATG	1 cut(s)	381
Bse8I	GATNNNNATC	1 cut(s)	846
BseBI	CCWGG	2 cut(s)	214, 781
BseGI	GGATG	1 cut(s)	731
BseJI	GATNNNNATC	1 cut(s)	846
BseLI	CCNNNNNNNGG	2 cut(s)	308, 950
BseMI	GCAATG	1 cut(s)	381
BseMII	CTCAG	2 cut(s)	453, 545
BseNI	ACTGG	1 cut(s)	511
BseRI	GAGGAG	1 cut(s)	47
BseSI	GKGCMC	1 cut(s)	83
BseXI	GCAGC	1 cut(s)	1010
BseYI	CCCAGC	1 cut(s)	518
BshFI	GGCC	1 cut(s)	291
BshNI	GGYRCC	2 cut(s)	996, 1007
BshTI	ACCGGT	2 cut(s)	362, 993
BsiHKAI	GWGCWC	2 cut(s)	83, 596
BsiSI	CCGG	6 cut(s)	288, 363, 446, 875, 944, 994
BslFI	GGGAC	1 cut(s)	428
BslI	CCNNNNNNNGG	2 cut(s)	308, 950
BsmAI	GTCTC	1 cut(s)	711
BsmFI	GGGAC	1 cut(s)	428
BsnI	GGCC	1 cut(s)	291
Bsp1286I	GDGCHC	2 cut(s)	83, 596
Bsp143I	GATC	6 cut(s)	3, 232, 277, 625, 799, 841
BspACI	CCGC	3 cut(s)	247, 812, 1005
BspANI	GGCC	1 cut(s)	291
BspCNI	CTCAG	2 cut(s)	452, 544
BspLI	GGNNCC	3 cut(s)	188, 998, 1009
BspPI	GGATC	1 cut(s)	227
BspT107I	GGYRCC	2 cut(s)	996, 1007
BsrDI	GCAATG	1 cut(s)	381
BsrFI	RCCGGY	2 cut(s)	362, 993
BsrI	ACTGG	1 cut(s)	511
BssAI	RCCGGY	2 cut(s)	362, 993
BssMI	GATC	6 cut(s)	3, 232, 277, 625, 799, 841
BssNI	GRCGYC	1 cut(s)	195
BssSI	CACGAG	1 cut(s)	335
Bst2BI	CACGAG	1 cut(s)	335
Bst2UI	CCWGG	2 cut(s)	214, 781
Bst4CI	ACNGT	1 cut(s)	566
Bst6I	CTCTTC	1 cut(s)	558
BstACI	GRCGYC	1 cut(s)	195
BstC8I	GCNNGC	1 cut(s)	347
BstDEI	CTNAG	3 cut(s)	410, 439, 531
BstF5I	GGATG	1 cut(s)	731
BstKTI	GATC	6 cut(s)	6, 235, 280, 628, 802, 844
BstMAI	GTCTC	1 cut(s)	711
BstMBI	GATC	6 cut(s)	3, 232, 277, 625, 799, 841
BstNI	CCWGG	2 cut(s)	214, 781
BstNSI	RCATGY	2 cut(s)	718, 790
BstSCI	CCNGG	4 cut(s)	212, 444, 779, 873
BstSLI	GKGCMC	1 cut(s)	83
BstV1I	GCAGC	1 cut(s)	1010
BstX2I	RGATCY	2 cut(s)	625, 841
BstXI	CCANNNNNNTGG	1 cut(s)	34
BstYI	RGATCY	2 cut(s)	625, 841
BsuI	GTATCC	1 cut(s)	881
BsuRI	GGCC	1 cut(s)	291
BtrI	CACGTC	1 cut(s)	978
BtsCI	GGATG	1 cut(s)	731
BtsIMutI	CAGTG	1 cut(s)	504
Cac8I	GCNNGC	1 cut(s)	347
Cfr10I	RCCGGY	2 cut(s)	362, 993
Cfr13I	GGNCC	2 cut(s)	37, 365
CseI	GACGC	1 cut(s)	415
Csp6I	GTAC	2 cut(s)	207, 1008
CspAI	ACCGGT	2 cut(s)	362, 993
CviAII	CATG	4 cut(s)	34, 183, 715, 787
CviQI	GTAC	2 cut(s)	207, 1008
DdeI	CTNAG	3 cut(s)	410, 439, 531
DpnI	GATC	6 cut(s)	5, 234, 279, 627, 801, 843
DpnII	GATC	6 cut(s)	3, 232, 277, 625, 799, 841
DrdI	GACNNNNNNGTC	1 cut(s)	131
DriI	GACNNNNNGTC	1 cut(s)	976
DseDI	GACNNNNNNGTC	1 cut(s)	131
EaeI	YGGCCR	1 cut(s)	289
Eam1104I	CTCTTC	1 cut(s)	558
Eam1105I	GACNNNNNGTC	1 cut(s)	976
EarI	CTCTTC	1 cut(s)	558
EciI	GGCGGA	1 cut(s)	827
Ecl136II	GAGCTC	1 cut(s)	594
Eco24I	GRGCYC	1 cut(s)	596
Eco47I	GGWCC	2 cut(s)	37, 365
Eco53kI	GAGCTC	1 cut(s)	594
Eco57I	CTGAAG	1 cut(s)	909
EcoICRI	GAGCTC	1 cut(s)	594
EcoRII	CCWGG	2 cut(s)	212, 779
EcoT22I	ATGCAT	1 cut(s)	733
EcoT38I	GRGCYC	1 cut(s)	596
FaeI	CATG	4 cut(s)	37, 186, 718, 790
FalI	AAGNNNNNCTT	2 cut(s)	140, 172
FaqI	GGGAC	1 cut(s)	428
FatI	CATG	4 cut(s)	33, 182, 714, 786
FblI	GTMKAC	1 cut(s)	198
Fnu4HI	GCNGC	1 cut(s)	1024
FokI	GGATG	1 cut(s)	718
FriOI	GRGCYC	1 cut(s)	596
Fsp4HI	GCNGC	1 cut(s)	1024
FspBI	CTAG	2 cut(s)	560, 839
GluI	GCNGC	1 cut(s)	1024
GsaI	CCCAGC	1 cut(s)	522
HaeIII	GGCC	1 cut(s)	291
HapII	CCGG	6 cut(s)	288, 363, 446, 875, 944, 994
HgaI	GACGC	1 cut(s)	415
Hin1I	GRCGYC	1 cut(s)	195
Hin1II	CATG	4 cut(s)	37, 186, 718, 790
HincII	GTYRAC	2 cut(s)	199, 885
HindII	GTYRAC	2 cut(s)	199, 885
HinfI	GANTC	4 cut(s)	340, 414, 847, 940
HpaII	CCGG	6 cut(s)	288, 363, 446, 875, 944, 994
HphI	GGTGA	5 cut(s)	8, 232, 253, 323, 737
Hpy166II	GTNNAC	5 cut(s)	81, 199, 576, 819, 885
Hpy188I	TCNGA	5 cut(s)	106, 591, 602, 846, 939
Hpy188III	TCNNGA	6 cut(s)	148, 337, 403, 466, 560, 623
Hpy8I	GTNNAC	5 cut(s)	81, 199, 576, 819, 885
Hpy99I	CGWCG	4 cut(s)	197, 200, 227, 982
HpyAV	CCTTC	4 cut(s)	166, 487, 716, 745
HpyCH4III	ACNGT	1 cut(s)	566
HpyCH4IV	ACGT	3 cut(s)	195, 222, 977
HpyCH4V	TGCA	7 cut(s)	81, 114, 142, 731, 901, 961, 1026
HpyF3I	CTNAG	3 cut(s)	410, 439, 531
HpySE526I	ACGT	3 cut(s)	195, 222, 977
Hsp92I	GRCGYC	1 cut(s)	195
Hsp92II	CATG	4 cut(s)	37, 186, 718, 790
KpnI	GGTACC	1 cut(s)	1011
Kzo9I	GATC	6 cut(s)	3, 232, 277, 625, 799, 841
LmnI	GCTCC	1 cut(s)	877
Lsp1109I	GCAGC	1 cut(s)	1010
LweI	GCATC	3 cut(s)	258, 718, 740
MaeI	CTAG	2 cut(s)	560, 839
MaeII	ACGT	3 cut(s)	195, 222, 977
MaeIII	GTNAC	2 cut(s)	566, 710
MalI	GATC	6 cut(s)	5, 234, 279, 627, 801, 843
MboI	GATC	6 cut(s)	3, 232, 277, 625, 799, 841
MboII	GAAGA	2 cut(s)	545, 898
MflI	RGATCY	2 cut(s)	625, 841
MhlI	GDGCHC	2 cut(s)	83, 596
MluCI	AATT	4 cut(s)	177, 541, 605, 794
MlyI	GAGTC	1 cut(s)	408
MmeI	TCCRAC	1 cut(s)	397
Mph1103I	ATGCAT	1 cut(s)	733
MseI	TTAA	2 cut(s)	176, 894
MspI	CCGG	6 cut(s)	288, 363, 446, 875, 944, 994
MspR9I	CCNGG	4 cut(s)	214, 446, 781, 875
MvaI	CCWGG	2 cut(s)	214, 781
NciI	CCSGG	2 cut(s)	446, 875
NdeII	GATC	6 cut(s)	3, 232, 277, 625, 799, 841
NlaIII	CATG	4 cut(s)	37, 186, 718, 790
NlaIV	GGNNCC	3 cut(s)	188, 998, 1009
NmeAIII	GCCGAG	1 cut(s)	396
NsiI	ATGCAT	1 cut(s)	733
NspI	RCATGY	2 cut(s)	718, 790
PcsI	WCGNNNNNNNCGW	3 cut(s)	333, 562, 606
PfeI	GAWTC	3 cut(s)	340, 847, 940
PfoI	TCCNGGA	3 cut(s)	444, 779, 873
PinAI	ACCGGT	2 cut(s)	362, 993
PkrI	GCNGC	1 cut(s)	1025
PleI	GAGTC	1 cut(s)	408
PpsI	GAGTC	1 cut(s)	408
Psp124BI	GAGCTC	1 cut(s)	596
Psp6I	CCWGG	2 cut(s)	212, 779
PspFI	CCCAGC	1 cut(s)	518
PspGI	CCWGG	2 cut(s)	212, 779
PspN4I	GGNNCC	3 cut(s)	188, 998, 1009
PspPI	GGNCC	2 cut(s)	37, 365
PsuI	RGATCY	2 cut(s)	625, 841
RsaI	GTAC	2 cut(s)	208, 1009
RsaNI	GTAC	2 cut(s)	207, 1008
SacI	GAGCTC	1 cut(s)	596
SalI	GTCGAC	1 cut(s)	197
SaqAI	TTAA	2 cut(s)	176, 894
SatI	GCNGC	1 cut(s)	1024
Sau3AI	GATC	6 cut(s)	3, 232, 277, 625, 799, 841
Sau96I	GGNCC	2 cut(s)	37, 365
SchI	GAGTC	1 cut(s)	408
ScrFI	CCNGG	4 cut(s)	214, 446, 781, 875
SduI	GDGCHC	2 cut(s)	83, 596
SfaNI	GCATC	3 cut(s)	258, 718, 740
SinI	GGWCC	2 cut(s)	37, 365
SmlI	CTYRAG	3 cut(s)	41, 401, 464
SmoI	CTYRAG	3 cut(s)	41, 401, 464
Sse9I	AATT	4 cut(s)	177, 541, 605, 794
SsiI	CCGC	3 cut(s)	247, 812, 1005
SspMI	CTAG	2 cut(s)	560, 839
SstI	GAGCTC	1 cut(s)	596
StyD4I	CCNGG	4 cut(s)	212, 444, 779, 873
TaaI	ACNGT	1 cut(s)	566
TaiI	ACGT	3 cut(s)	198, 225, 980
TaqI	TCGA	5 cut(s)	198, 225, 327, 720, 969
TasI	AATT	4 cut(s)	177, 541, 605, 794
TatI	WGTACW	1 cut(s)	206
TfiI	GAWTC	3 cut(s)	340, 847, 940
Tru1I	TTAA	2 cut(s)	176, 894
Tru9I	TTAA	2 cut(s)	176, 894
TscAI	CASTG	1 cut(s)	511
TseI	GCWGC	1 cut(s)	1023
TspDTI	ATGAA	2 cut(s)	171, 442
TspRI	CASTG	1 cut(s)	511
VneI	GTGCAC	1 cut(s)	79
VpaK11BI	GGWCC	2 cut(s)	37, 365
XapI	RAATTY	2 cut(s)	541, 794
XbaI	TCTAGA	1 cut(s)	559
XceI	RCATGY	2 cut(s)	718, 790
XcmI	CCANNNNNNNNNTGG	1 cut(s)	787
XmiI	GTMKAC	1 cut(s)	198
XspI	CTAG	2 cut(s)	560, 839
ZraI	GACGTC	1 cut(s)	196
Zsp2I	ATGCAT	1 cut(s)	733

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.