Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002823

Physical Location & Seq

Genomic Coordinates Reverse (-)

23753515 .. 23760311

Gene Structure 6797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00401400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGACCTCAAGCTATCCATCCTGCTCGGCTTTTCTCTGTTCTTCTCCACCATCCTAACCCCAACTCTCTCTGAGCTCTGCAACGCTCAAGACAAAAAGGTTCTCTTCGAAATCAAGACAGCCTTTAACAACCTCTTCATCTTGTCCTCGTGGAAATCCGACGTCGACTGCTGTACTACCGACTGGTACAACGTCGAGTGTGATCTCAACACCAATCGCATCACCGCCCTCACCATCTTCACCGACGACCGCCTCACCGGCCAAATCCCCGCCCAAGTCGGAGACTTGCCCTACCTCGAAAACCTCGAGCTCCGCAAGCTCCCCAATCTAAGCTCGGCGGGGAAGGATGAAGCCGATGTGATCCGGGTTGGTCGATCCGGAGGCTTGAGTGACCGATCCGGAGAAGGAACACGACCCGAAGATGAAGACGGCGATCTTGCGACGATCCGGGTGCTCTTCGGTCATATTCCTAGCTCATTCGGACGATTCGTTGGCACCGTTCCAGATATATTCCTCTCCCACAACCAGCTCACAGGCAATATCCCAACCTCATTTGCTAACATGAACTTTCATCAAATAGACTTGTCACGCAACAAGCTTGAAGGCGATCCGTCAGTTATATTCGGGTTGAACAAGACGACCCAGATGGTGGATTTGTCGAGGAACATGCTGGACTTCGATCTGTCCAAGGTGGTGTTTTCGACAAGCTTGAGTTCGGTGGACTTGAACCATAACAGGATCACAGGGAGTATTCCGGAGCAGTTGACCCAATTGGATAATTTGCAGTTGTTCAATGTGAGCTACAACAGGTTGTGTGGTCAGATTCCGGTAGGTGGGAAGTTGCAGAGCTTTGACACCACGTCGTATTTCCATAACCGATGCCTTTGTGGTGCCCCACTCCCAAGTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005911 GO:0008150 GO:0009505 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0030234 GO:0030312 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0050790 GO:0055044 GO:0065007 GO:0065009 GO:0071944 GO:0090353 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

303

Amino Acids

33.56

Weight (kDa)

4.94

Isoelectric Point (pI)

36.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	29 - 68	7.1e-08	Leucine rich repeat N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06860 AT5G06870
fragaria_vesca	FvH4_6g22790
malus_domestica	MD14G1062500.v1.1 MD14G1062600.v1.1
prunus_persica	Prupe.7G072600_v2.0.a1 Prupe.7G072700_v2.0.a1 Prupe.7G072700_v2.0.a1
pyrus_communis	pycom14g05040
rosa_chinensis	RchiOBHm_Chr3g0480401 RchiOBHm_Chr3g0480411
rosa_laevigata	RLG00000023478 RLG00000023480 RLG00000023484 RLG00000023486
rosa_multiflora	Rmu_sc0002205.1_g000006 Rmu_sc0002205.1_g000018 Rmu_sc0002205.1_g000023 Rmu_sc0003742.1_g000007 Rmu_sc0006555.1_g000004 Rmu_sc0010988.1_g000004
rosa_roxburghii	Rroxscaffold_6G00401380 Rroxscaffold_6G00401390 Rroxscaffold_6G00401400
rosa_rugosa	Rorug03G0183600.1 Rorug03G0183700
rosa_samantha	Rh3AG235100 Rh3AG235200 Rh3BG267800 Rh3BG268000 Rh3BG268100 Rh3CG265000 Rh3CG265200 Rh3DG260900 Rh3DG261100 Rh5BG519600 Rh5CG543500
rosa_wichuraiana	Rw3G021110 Rw5G046270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	165
AccB1I	GGYRCC	2 cut(s)	494, 890
AccB7I	CCANNNNNTGG	1 cut(s)	649
AccI	GTMKAC	1 cut(s)	165
AccIII	TCCGGA	3 cut(s)	377, 398, 754
AciI	CCGC	5 cut(s)	225, 250, 270, 313, 338
AclWI	GGATC	6 cut(s)	355, 369, 390, 439, 602, 746
AcoI	YGGCCR	1 cut(s)	259
AcyI	GRCGYC	1 cut(s)	162
AfaI	GTAC	2 cut(s)	175, 188
AfiI	CCNNNNNNNGG	2 cut(s)	649, 833
AgsI	TTSAA	4 cut(s)	602, 631, 727, 793
AhdI	GACNNNNNGTC	1 cut(s)	859
AjiI	CACGTC	1 cut(s)	861
Alw21I	GWGCWC	3 cut(s)	78, 312, 456
Alw26I	GTCTC	1 cut(s)	276
AlwI	GGATC	6 cut(s)	355, 369, 390, 439, 602, 746
Ama87I	CYCGRG	1 cut(s)	305
Aor13HI	TCCGGA	3 cut(s)	377, 398, 754
AoxI	GGCC	1 cut(s)	259
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	2 cut(s)	365, 449
AsuHPI	GGTGA	4 cut(s)	214, 223, 232, 247
AsuII	TTCGAA	1 cut(s)	108
AvaI	CYCGRG	1 cut(s)	305
AvaII	GGWCC	1 cut(s)	4
BaeGI	GKGCMC	1 cut(s)	895
BanI	GGYRCC	2 cut(s)	494, 890
BanII	GRGCYC	2 cut(s)	78, 312
BauI	CACGAG	1 cut(s)	148
BbsI	GAAGAC	1 cut(s)	432
Bbv12I	GWGCWC	3 cut(s)	78, 312, 456
BccI	CCATC	4 cut(s)	26, 59, 242, 640
BceAI	ACGGC	1 cut(s)	445
BcgI	CGANNNNNNTGC	4 cut(s)	433, 467, 649, 683
BcnI	CCSGG	2 cut(s)	365, 449
BcoDI	GTCTC	1 cut(s)	276
BfaI	CTAG	2 cut(s)	471, 910
BglI	GCCNNNNNGGC	1 cut(s)	258
Bme1390I	CCNGG	2 cut(s)	365, 449
Bme18I	GGWCC	1 cut(s)	4
BmeRI	GACNNNNNGTC	1 cut(s)	859
BmeT110I	CYCGRG	1 cut(s)	305
BmgBI	CACGTC	1 cut(s)	861
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	496, 892
BmrFI	CCNGG	2 cut(s)	365, 449
BmsI	GCATC	2 cut(s)	228, 869
BpiI	GAAGAC	1 cut(s)	432
Bpu14I	TTCGAA	1 cut(s)	108
BpuEI	CTTGAG	3 cut(s)	72, 406, 730
BpuMI	CCSGG	2 cut(s)	365, 449
BsaHI	GRCGYC	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	687
BsaWI	WCCGGW	4 cut(s)	377, 398, 754, 826
Bsc4I	CCNNNNNNNGG	2 cut(s)	649, 833
Bse118I	RCCGGY	1 cut(s)	257
Bse1I	ACTGG	1 cut(s)	188
BseAI	TCCGGA	3 cut(s)	377, 398, 754
BseDI	CCNNGG	1 cut(s)	687
BseGI	GGATG	3 cut(s)	18, 51, 352
BseLI	CCNNNNNNNGG	2 cut(s)	649, 833
BseMII	CTCAG	1 cut(s)	63
BseNI	ACTGG	1 cut(s)	188
BseSI	GKGCMC	1 cut(s)	895
Bsh1285I	CGRYCG	1 cut(s)	250
BshFI	GGCC	1 cut(s)	261
BshNI	GGYRCC	2 cut(s)	494, 890
BsiEI	CGRYCG	1 cut(s)	250
BsiHKAI	GWGCWC	3 cut(s)	78, 312, 456
BsiHKCI	CYCGRG	1 cut(s)	305
BsiSI	CCGG	7 cut(s)	258, 364, 378, 399, 448, 755, 827
BslI	CCNNNNNNNGG	2 cut(s)	649, 833
BsmAI	GTCTC	1 cut(s)	276
BsnI	GGCC	1 cut(s)	261
BsoBI	CYCGRG	1 cut(s)	305
Bsp119I	TTCGAA	1 cut(s)	108
Bsp1286I	GDGCHC	4 cut(s)	78, 312, 456, 895
Bsp13I	TCCGGA	3 cut(s)	377, 398, 754
Bsp143I	GATC	9 cut(s)	202, 360, 374, 395, 433, 444, 607, 679, 738
BspACI	CCGC	5 cut(s)	225, 250, 270, 313, 338
BspANI	GGCC	1 cut(s)	261
BspCNI	CTCAG	1 cut(s)	64
BspEI	TCCGGA	3 cut(s)	377, 398, 754
BspLI	GGNNCC	2 cut(s)	496, 892
BspPI	GGATC	6 cut(s)	355, 369, 390, 439, 602, 746
BspQI	GCTCTTC	1 cut(s)	461
BspT104I	TTCGAA	1 cut(s)	108
BspT107I	GGYRCC	2 cut(s)	494, 890
BsrFI	RCCGGY	1 cut(s)	257
BsrI	ACTGG	1 cut(s)	188
BssAI	RCCGGY	1 cut(s)	257
BssECI	CCNNGG	1 cut(s)	687
BssMI	GATC	9 cut(s)	202, 360, 374, 395, 433, 444, 607, 679, 738
BssNI	GRCGYC	1 cut(s)	162
BssSI	CACGAG	1 cut(s)	148
BssT1I	CCWWGG	1 cut(s)	687
Bst2BI	CACGAG	1 cut(s)	148
Bst4CI	ACNGT	1 cut(s)	499
Bst6I	CTCTTC	3 cut(s)	110, 140, 461
BstACI	GRCGYC	1 cut(s)	162
BstBI	TTCGAA	1 cut(s)	108
BstC8I	GCNNGC	1 cut(s)	317
BstDEI	CTNAG	2 cut(s)	72, 329
BstF5I	GGATG	3 cut(s)	18, 51, 352
BstKTI	GATC	9 cut(s)	205, 363, 377, 398, 436, 447, 610, 682, 741
BstMAI	GTCTC	1 cut(s)	276
BstMBI	GATC	9 cut(s)	202, 360, 374, 395, 433, 444, 607, 679, 738
BstMCI	CGRYCG	1 cut(s)	250
BstMWI	GCNNNNNNNGC	2 cut(s)	258, 316
BstNSI	RCATGY	1 cut(s)	670
BstSCI	CCNGG	2 cut(s)	363, 447
BstSLI	GKGCMC	1 cut(s)	895
BstV2I	GAAGAC	1 cut(s)	432
BsuRI	GGCC	1 cut(s)	261
BtrI	CACGTC	1 cut(s)	861
BtsCI	GGATG	3 cut(s)	18, 51, 352
Cac8I	GCNNGC	1 cut(s)	317
Cfr10I	RCCGGY	1 cut(s)	257
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	2 cut(s)	174, 187
CviAII	CATG	2 cut(s)	562, 667
CviQI	GTAC	2 cut(s)	174, 187
DdeI	CTNAG	2 cut(s)	72, 329
DpnI	GATC	9 cut(s)	204, 362, 376, 397, 435, 446, 609, 681, 740
DpnII	GATC	9 cut(s)	202, 360, 374, 395, 433, 444, 607, 679, 738
DriI	GACNNNNNGTC	1 cut(s)	859
EaeI	YGGCCR	1 cut(s)	259
Eam1104I	CTCTTC	3 cut(s)	110, 140, 461
Eam1105I	GACNNNNNGTC	1 cut(s)	859
EarI	CTCTTC	3 cut(s)	110, 140, 461
Ecl136II	GAGCTC	2 cut(s)	76, 310
Eco130I	CCWWGG	1 cut(s)	687
Eco24I	GRGCYC	2 cut(s)	78, 312
Eco47I	GGWCC	1 cut(s)	4
Eco53kI	GAGCTC	2 cut(s)	76, 310
Eco88I	CYCGRG	1 cut(s)	305
EcoICRI	GAGCTC	2 cut(s)	76, 310
EcoT14I	CCWWGG	1 cut(s)	687
EcoT38I	GRGCYC	2 cut(s)	78, 312
ErhI	CCWWGG	1 cut(s)	687
FaeI	CATG	2 cut(s)	565, 670
FaiI	YATR	7 cut(s)	465, 509, 563, 620, 668, 732, 873
FalI	AAGNNNNNCTT	4 cut(s)	89, 121, 107, 139
FatI	CATG	2 cut(s)	561, 666
FauI	CCCGC	2 cut(s)	277, 331
FblI	GTMKAC	1 cut(s)	165
FokI	GGATG	3 cut(s)	5, 38, 359
FriOI	GRGCYC	2 cut(s)	78, 312
FspBI	CTAG	2 cut(s)	471, 910
HaeIII	GGCC	1 cut(s)	261
HapII	CCGG	7 cut(s)	258, 364, 378, 399, 448, 755, 827
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	2 cut(s)	565, 670
HincII	GTYRAC	2 cut(s)	166, 765
HindII	GTYRAC	2 cut(s)	166, 765
HindIII	AAGCTT	2 cut(s)	596, 706
HinfI	GANTC	2 cut(s)	486, 823
HpaII	CCGG	7 cut(s)	258, 364, 378, 399, 448, 755, 827
HphI	GGTGA	4 cut(s)	214, 223, 232, 247
Hpy166II	GTNNAC	3 cut(s)	166, 721, 765
Hpy188I	TCNGA	5 cut(s)	73, 160, 281, 482, 822
Hpy188III	TCNNGA	6 cut(s)	89, 115, 378, 399, 503, 755
Hpy8I	GTNNAC	3 cut(s)	166, 721, 765
Hpy99I	CGWCG	6 cut(s)	164, 167, 197, 248, 445, 865
HpyAV	CCTTC	3 cut(s)	337, 398, 596
HpyCH4III	ACNGT	1 cut(s)	499
HpyCH4IV	ACGT	3 cut(s)	162, 192, 860
HpyCH4V	TGCA	3 cut(s)	81, 784, 844
HpyF10VI	GCNNNNNNNGC	2 cut(s)	258, 316
HpyF3I	CTNAG	2 cut(s)	72, 329
HpySE526I	ACGT	3 cut(s)	162, 192, 860
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	2 cut(s)	565, 670
Kpn2I	TCCGGA	3 cut(s)	377, 398, 754
Kzo9I	GATC	9 cut(s)	202, 360, 374, 395, 433, 444, 607, 679, 738
LguI	GCTCTTC	1 cut(s)	461
LmnI	GCTCC	3 cut(s)	315, 324, 757
LweI	GCATC	2 cut(s)	228, 869
MaeI	CTAG	2 cut(s)	471, 910
MaeII	ACGT	3 cut(s)	162, 192, 860
MaeIII	GTNAC	2 cut(s)	389, 585
MalI	GATC	9 cut(s)	204, 362, 376, 397, 435, 446, 609, 681, 740
MboI	GATC	9 cut(s)	202, 360, 374, 395, 433, 444, 607, 679, 738
MboII	GAAGA	7 cut(s)	34, 97, 127, 229, 431, 437, 448
MfeI	CAATTG	1 cut(s)	770
MhlI	GDGCHC	4 cut(s)	78, 312, 456, 895
MluCI	AATT	2 cut(s)	770, 778
MmeI	TCCRAC	2 cut(s)	183, 259
MroI	TCCGGA	3 cut(s)	377, 398, 754
MseI	TTAA	1 cut(s)	126
MspI	CCGG	7 cut(s)	258, 364, 378, 399, 448, 755, 827
MspR9I	CCNGG	2 cut(s)	365, 449
MunI	CAATTG	1 cut(s)	770
MwoI	GCNNNNNNNGC	2 cut(s)	258, 316
NciI	CCSGG	2 cut(s)	365, 449
NdeII	GATC	9 cut(s)	202, 360, 374, 395, 433, 444, 607, 679, 738
NlaIII	CATG	2 cut(s)	565, 670
NlaIV	GGNNCC	2 cut(s)	496, 892
NmeAIII	GCCGAG	2 cut(s)	6, 314
NmuCI	GTSAC	2 cut(s)	389, 585
NspI	RCATGY	1 cut(s)	670
NspV	TTCGAA	1 cut(s)	108
PaeR7I	CTCGAG	1 cut(s)	305
PciSI	GCTCTTC	1 cut(s)	461
PcsI	WCGNNNNNNNCGW	3 cut(s)	303, 486, 495
PfeI	GAWTC	2 cut(s)	486, 823
PflMI	CCANNNNNTGG	1 cut(s)	649
Psp124BI	GAGCTC	2 cut(s)	78, 312
PspN4I	GGNNCC	2 cut(s)	496, 892
PspPI	GGNCC	1 cut(s)	4
PspXI	VCTCGAGB	1 cut(s)	305
RsaI	GTAC	2 cut(s)	175, 188
RsaNI	GTAC	2 cut(s)	174, 187
SacI	GAGCTC	2 cut(s)	78, 312
SalI	GTCGAC	1 cut(s)	164
SapI	GCTCTTC	1 cut(s)	461
SaqAI	TTAA	1 cut(s)	126
Sau3AI	GATC	9 cut(s)	202, 360, 374, 395, 433, 444, 607, 679, 738
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	2 cut(s)	365, 449
SduI	GDGCHC	4 cut(s)	78, 312, 456, 895
SfaNI	GCATC	2 cut(s)	228, 869
Sfr274I	CTCGAG	1 cut(s)	305
SfuI	TTCGAA	1 cut(s)	108
SinI	GGWCC	1 cut(s)	4
SlaI	CTCGAG	1 cut(s)	305
SmlI	CTYRAG	5 cut(s)	8, 87, 305, 385, 709
SmoI	CTYRAG	5 cut(s)	8, 87, 305, 385, 709
Sse9I	AATT	2 cut(s)	770, 778
SsiI	CCGC	5 cut(s)	225, 250, 270, 313, 338
SspMI	CTAG	2 cut(s)	471, 910
SstI	GAGCTC	2 cut(s)	78, 312
StyD4I	CCNGG	2 cut(s)	363, 447
StyI	CCWWGG	1 cut(s)	687
TaaI	ACNGT	1 cut(s)	499
TaiI	ACGT	3 cut(s)	165, 195, 863
TaqI	TCGA	9 cut(s)	108, 165, 195, 297, 306, 373, 659, 678, 701
TaqII	GACCGA	2 cut(s)	408, 449
TasI	AATT	2 cut(s)	770, 778
TatI	WGTACW	1 cut(s)	173
TfiI	GAWTC	2 cut(s)	486, 823
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TseFI	GTSAC	2 cut(s)	389, 585
Tsp45I	GTSAC	2 cut(s)	389, 585
TspDTI	ATGAA	5 cut(s)	127, 363, 438, 560, 578
TspGWI	ACGGA	1 cut(s)	600
Van91I	CCANNNNNTGG	1 cut(s)	649
VpaK11BI	GGWCC	1 cut(s)	4
XceI	RCATGY	1 cut(s)	670
XhoI	CTCGAG	1 cut(s)	305
XmiI	GTMKAC	1 cut(s)	165
XspI	CTAG	2 cut(s)	471, 910
ZraI	GACGTC	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.