Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0002823

Physical Location & Seq

Genomic Coordinates Forward (+)

4856240 .. 4857316

Gene Structure 1077 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g05040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGCCGCATGCAATACCTATAAATCCCACACTTCTTTGAACCACAAATTCACATCTCTCAGGCTCTCAACCAAAACCAAAACAATGGAACTCAAGTTCTCCACCTTCCTCTCCCTAACCCTACTCTTCTCCTCCGTCCTAAACCCCGCTCTCTCCGATCTCTGCAACCCCGACGACAAAAAAGTCCTCCTACAAATCAAGAAAGCCTTCGGCGACCCCTACGTCTTGGCCTCATGGAAATCAGACACTGACTGCTGCGATTGGTACTGCGTCACCTGTGACTCCACCACAAACCGCATTAACTCCCTCACCATCTTTGCCGGCCAGGTGTCAGGCCAAATCCCCGCCCTAGTAGGAGACTTGCCATACCTTGAAACCCTTGAATTCCATAAGCAACCCAATCTCACTGGCCCAATCCAACCCGCCATTGCCAAGCTCAAAGGACTCAAGTCTCTCAGGCTCAGCTGGACCAACCTCTCAGGCTCTGTCCCTGACTTCCTCAGCCAACTCAAGAACCTCACATTCCTCGACCTCTCCTTCAACAACCTCACCGGTGCCATCCCCAGCTCGCTTTCTGAGCTCCCAAACCTCGGCGCTCTTCGTCTAGACCGCAATAAGCTCACAGGTCATATTCCGATATCGTTTGGGCAGTTCATTGGCAACGTTCCAGACCTGTATCTCTCCCACAACCAGCTTTCTGGTAACATTCCAACCTCATTCGCTCAGATGGACTTCACCAGCATAGACTTATCACGGAACAAGCTCGAAGGTGACGCATCCGTGATATTTGGGCTGAACAAGACAACCCAGATTGTGGACCTGTCCAGGAACTTGCTGGAATTTAATCTGTCAAAGGTGGAGTTTCCGACAAGCTTGACCTCGCTGGATATCAACCACAATAAGATCTACGGGAGTATCCCAGTGGAGTTTACGCAACTGAATTTCCAGTTCCTGAACGTGAGCTACAACAGGCTGTGTGGTCAGATTCCTGTGGGTGGAAAGTTGCAGAGCTTCGACGAGTATTCTTATTTCCATAACCGATGCTTGTGCGGTGCTCCACTCCCAAGCTGCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005911 GO:0008150 GO:0009505 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0030234 GO:0030312 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0050790 GO:0055044 GO:0065007 GO:0065009 GO:0071944 GO:0090353 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

359

Amino Acids

39.66

Weight (kDa)

8.26

Isoelectric Point (pI)

29.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	57 - 94	7.7e-13	Leucine rich repeat N-terminal domain
LRR_8	PF13855	148 - 207	9.8e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06860 AT5G06870
fragaria_vesca	FvH4_6g22790
malus_domestica	MD14G1062500.v1.1 MD14G1062600.v1.1
prunus_persica	Prupe.7G072600_v2.0.a1 Prupe.7G072700_v2.0.a1 Prupe.7G072700_v2.0.a1
pyrus_communis	pycom14g05040
rosa_chinensis	RchiOBHm_Chr3g0480401 RchiOBHm_Chr3g0480411
rosa_laevigata	RLG00000023478 RLG00000023480 RLG00000023484 RLG00000023486
rosa_multiflora	Rmu_sc0002205.1_g000006 Rmu_sc0002205.1_g000018 Rmu_sc0002205.1_g000023 Rmu_sc0003742.1_g000007 Rmu_sc0006555.1_g000004 Rmu_sc0010988.1_g000004
rosa_roxburghii	Rroxscaffold_6G00401380 Rroxscaffold_6G00401390 Rroxscaffold_6G00401400
rosa_rugosa	Rorug03G0183600.1 Rorug03G0183700
rosa_samantha	Rh3AG235100 Rh3AG235200 Rh3BG267800 Rh3BG268000 Rh3BG268100 Rh3CG265000 Rh3CG265200 Rh3DG260900 Rh3DG261100 Rh5BG519600 Rh5CG543500
rosa_wichuraiana	Rw3G021110 Rw5G046270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	182, 221
AccB1I	GGYRCC	1 cut(s)	554
AccB7I	CCANNNNNTGG	1 cut(s)	814
AccBSI	CCGCTC	1 cut(s)	149
AciI	CCGC	7 cut(s)	6, 147, 295, 345, 423, 610, 1050
AclI	AACGTT	1 cut(s)	663
AcoI	YGGCCR	2 cut(s)	3, 322
AcsI	RAATTY	4 cut(s)	47, 383, 839, 940
AfaI	GTAC	1 cut(s)	266
AfiI	CCNNNNNNNGG	3 cut(s)	590, 814, 995
AgeI	ACCGGT	1 cut(s)	551
AgsI	TTSAA	4 cut(s)	40, 374, 383, 541
AjnI	CCWGG	2 cut(s)	324, 824
AloI	GAACNNNNNNTCC	2 cut(s)	80, 112
Alw21I	GWGCWC	2 cut(s)	582, 1057
Alw26I	GTCTC	2 cut(s)	351, 456
AlwNI	CAGNNNCTG	3 cut(s)	248, 485, 952
AoxI	GGCC	5 cut(s)	3, 228, 322, 334, 409
ApeKI	GCWGC	2 cut(s)	255, 1068
ApoI	RAATTY	4 cut(s)	47, 383, 839, 940
AsiGI	ACCGGT	1 cut(s)	551
Asp700I	GAANNNNTTC	1 cut(s)	206
AspLEI	GCGC	1 cut(s)	596
AspS9I	GGNCC	3 cut(s)	410, 468, 817
AsuHPI	GGTGA	5 cut(s)	265, 301, 541, 727, 782
AvaII	GGWCC	2 cut(s)	468, 817
BaeI	ACNNNNGTAYC	2 cut(s)	898, 931
BanI	GGYRCC	1 cut(s)	554
BanII	GRGCYC	1 cut(s)	582
Bbv12I	GWGCWC	2 cut(s)	582, 1057
BbvCI	CCTCAGC	1 cut(s)	500
BbvI	GCAGC	2 cut(s)	242, 1055
BccI	CCATC	3 cut(s)	320, 566, 721
BcgI	CGANNNNNNTGC	2 cut(s)	1029, 1063
BciT130I	CCWGG	2 cut(s)	326, 826
BciVI	GTATCC	1 cut(s)	926
BcoDI	GTCTC	2 cut(s)	351, 456
BfaI	CTAG	2 cut(s)	350, 605
BfoI	RGCGCY	1 cut(s)	597
BfuI	GTATCC	1 cut(s)	926
BglII	AGATCT	1 cut(s)	903
BisI	GCNGC	3 cut(s)	6, 256, 1069
BlpI	GCTNAGC	1 cut(s)	461
BlsI	GCNGC	3 cut(s)	7, 257, 1070
Bme1390I	CCNGG	2 cut(s)	326, 826
Bme18I	GGWCC	2 cut(s)	468, 817
BmgT120I	GGNCC	3 cut(s)	410, 468, 817
BmiI	GGNNCC	1 cut(s)	556
BmrFI	CCNGG	2 cut(s)	326, 826
BmrI	ACTGGG	1 cut(s)	914
BmsI	GCATC	2 cut(s)	785, 1031
BmuI	ACTGGG	1 cut(s)	914
BoxI	GACNNNNGTC	1 cut(s)	448
Bpu10I	CCTNAGC	1 cut(s)	500
Bpu1102I	GCTNAGC	1 cut(s)	461
BpuEI	CTTGAG	3 cut(s)	77, 431, 494
BsaJI	CCNNGG	1 cut(s)	589
BsaWI	WCCGGW	1 cut(s)	551
Bsc4I	CCNNNNNNNGG	3 cut(s)	590, 814, 995
Bse118I	RCCGGY	2 cut(s)	320, 551
Bse1I	ACTGG	3 cut(s)	412, 920, 946
Bse3DI	GCAATG	1 cut(s)	426
BseBI	CCWGG	2 cut(s)	326, 826
BseDI	CCNNGG	1 cut(s)	589
BseGI	GGATG	2 cut(s)	558, 776
BseLI	CCNNNNNNNGG	3 cut(s)	590, 814, 995
BseMI	GCAATG	1 cut(s)	426
BseMII	CTCAG	7 cut(s)	73, 469, 475, 492, 514, 567, 737
BseNI	ACTGG	3 cut(s)	412, 920, 946
BseRI	GAGGAG	1 cut(s)	121
BseXI	GCAGC	2 cut(s)	242, 1055
BseYI	CCCAGC	1 cut(s)	563
BshFI	GGCC	5 cut(s)	5, 230, 324, 336, 411
BshNI	GGYRCC	1 cut(s)	554
BshTI	ACCGGT	1 cut(s)	551
BsiHKAI	GWGCWC	2 cut(s)	582, 1057
BsiSI	CCGG	2 cut(s)	321, 552
BslFI	GGGAC	1 cut(s)	473
BslI	CCNNNNNNNGG	3 cut(s)	590, 814, 995
BsmAI	GTCTC	2 cut(s)	351, 456
BsmFI	GGGAC	1 cut(s)	473
BsnI	GGCC	5 cut(s)	5, 230, 324, 336, 411
Bsp1286I	GDGCHC	2 cut(s)	582, 1057
Bsp143I	GATC	2 cut(s)	157, 903
Bsp1720I	GCTNAGC	1 cut(s)	461
BspACI	CCGC	7 cut(s)	6, 147, 295, 345, 423, 610, 1050
BspANI	GGCC	5 cut(s)	5, 230, 324, 336, 411
BspCNI	CTCAG	7 cut(s)	72, 468, 474, 491, 513, 568, 736
BspLI	GGNNCC	1 cut(s)	556
BspQI	GCTCTTC	1 cut(s)	603
BspT107I	GGYRCC	1 cut(s)	554
BsrBI	CCGCTC	1 cut(s)	149
BsrDI	GCAATG	1 cut(s)	426
BsrFI	RCCGGY	2 cut(s)	320, 551
BsrI	ACTGG	3 cut(s)	412, 920, 946
BssAI	RCCGGY	2 cut(s)	320, 551
BssECI	CCNNGG	1 cut(s)	589
BssMI	GATC	2 cut(s)	157, 903
Bst2UI	CCWGG	2 cut(s)	326, 826
Bst6I	CTCTTC	2 cut(s)	131, 603
BstC8I	GCNNGC	3 cut(s)	10, 322, 569
BstDEI	CTNAG	7 cut(s)	59, 455, 461, 478, 500, 576, 723
BstF5I	GGATG	2 cut(s)	558, 776
BstH2I	RGCGCY	1 cut(s)	597
BstHHI	GCGC	1 cut(s)	596
BstKTI	GATC	2 cut(s)	160, 906
BstMAI	GTCTC	2 cut(s)	351, 456
BstMBI	GATC	2 cut(s)	157, 903
BstMWI	GCNNNNNNNGC	1 cut(s)	577
BstNI	CCWGG	2 cut(s)	326, 826
BstNSI	RCATGY	1 cut(s)	12
BstPAI	GACNNNNGTC	1 cut(s)	448
BstSCI	CCNGG	2 cut(s)	324, 824
BstV1I	GCAGC	2 cut(s)	242, 1055
BstX2I	RGATCY	1 cut(s)	903
BstXI	CCANNNNNNTGG	2 cut(s)	85, 698
BstYI	RGATCY	1 cut(s)	903
BsuI	GTATCC	1 cut(s)	926
BsuRI	GGCC	5 cut(s)	5, 230, 324, 336, 411
BtsCI	GGATG	2 cut(s)	558, 776
BtsIMutI	CAGTG	3 cut(s)	246, 405, 927
Cac8I	GCNNGC	3 cut(s)	10, 322, 569
CaiI	CAGNNNCTG	3 cut(s)	248, 485, 952
CfoI	GCGC	1 cut(s)	596
Cfr10I	RCCGGY	2 cut(s)	320, 551
Cfr13I	GGNCC	3 cut(s)	410, 468, 817
CseI	GACGC	2 cut(s)	259, 782
Csp6I	GTAC	1 cut(s)	265
CspAI	ACCGGT	1 cut(s)	551
CviAII	CATG	2 cut(s)	9, 234
CviQI	GTAC	1 cut(s)	265
DdeI	CTNAG	7 cut(s)	59, 455, 461, 478, 500, 576, 723
DpnI	GATC	2 cut(s)	159, 905
DpnII	GATC	2 cut(s)	157, 903
DrdI	GACNNNNNNGTC	2 cut(s)	182, 221
DseDI	GACNNNNNNGTC	2 cut(s)	182, 221
EaeI	YGGCCR	2 cut(s)	3, 322
Eam1104I	CTCTTC	2 cut(s)	131, 603
EarI	CTCTTC	2 cut(s)	131, 603
Ecl136II	GAGCTC	1 cut(s)	580
Eco24I	GRGCYC	1 cut(s)	582
Eco32I	GATATC	2 cut(s)	639, 889
Eco47I	GGWCC	2 cut(s)	468, 817
Eco53kI	GAGCTC	1 cut(s)	580
EcoICRI	GAGCTC	1 cut(s)	580
EcoRI	GAATTC	1 cut(s)	383
EcoRII	CCWGG	2 cut(s)	324, 824
EcoRV	GATATC	2 cut(s)	639, 889
EcoT38I	GRGCYC	1 cut(s)	582
FaeI	CATG	2 cut(s)	12, 237
FaiI	YATR	8 cut(s)	10, 21, 235, 367, 390, 630, 743, 1035
FalI	AAGNNNNNCTT	2 cut(s)	191, 223
FaqI	GGGAC	1 cut(s)	473
FatI	CATG	2 cut(s)	8, 233
FauI	CCCGC	3 cut(s)	154, 352, 430
Fnu4HI	GCNGC	3 cut(s)	6, 256, 1069
FokI	GGATG	2 cut(s)	545, 763
FriOI	GRGCYC	1 cut(s)	582
Fsp4HI	GCNGC	3 cut(s)	6, 256, 1069
FspBI	CTAG	2 cut(s)	350, 605
GlaI	GCGC	1 cut(s)	595
GluI	GCNGC	3 cut(s)	6, 256, 1069
GsaI	CCCAGC	1 cut(s)	567
HaeII	RGCGCY	1 cut(s)	597
HaeIII	GGCC	5 cut(s)	5, 230, 324, 336, 411
HapII	CCGG	2 cut(s)	321, 552
HgaI	GACGC	2 cut(s)	259, 782
HhaI	GCGC	1 cut(s)	596
Hin1II	CATG	2 cut(s)	12, 237
Hin6I	GCGC	1 cut(s)	594
HinP1I	GCGC	1 cut(s)	594
HindIII	AAGCTT	1 cut(s)	871
HinfI	GANTC	3 cut(s)	281, 444, 985
HpaII	CCGG	2 cut(s)	321, 552
HphI	GGTGA	5 cut(s)	265, 301, 541, 727, 782
Hpy166II	GTNNAC	2 cut(s)	817, 930
Hpy188I	TCNGA	7 cut(s)	157, 244, 577, 636, 726, 867, 984
Hpy188III	TCNNGA	5 cut(s)	199, 511, 605, 668, 952
Hpy8I	GTNNAC	2 cut(s)	817, 930
Hpy99I	CGWCG	2 cut(s)	176, 1019
HpyAV	CCTTC	4 cut(s)	115, 217, 547, 761
HpyCH4IV	ACGT	3 cut(s)	222, 663, 957
HpyCH4V	TGCA	4 cut(s)	12, 165, 1006, 1071
HpyF10VI	GCNNNNNNNGC	1 cut(s)	577
HpyF3I	CTNAG	7 cut(s)	59, 455, 461, 478, 500, 576, 723
HpySE526I	ACGT	3 cut(s)	222, 663, 957
Hsp92II	CATG	2 cut(s)	12, 237
HspAI	GCGC	1 cut(s)	594
KroI	GCCGGC	1 cut(s)	320
KroNI	GCCGGC	1 cut(s)	322
Kzo9I	GATC	2 cut(s)	157, 903
LguI	GCTCTTC	1 cut(s)	603
LmnI	GCTCC	2 cut(s)	585, 1060
Lsp1109I	GCAGC	2 cut(s)	242, 1055
LweI	GCATC	2 cut(s)	785, 1031
MaeI	CTAG	2 cut(s)	350, 605
MaeII	ACGT	3 cut(s)	222, 663, 957
MaeIII	GTNAC	4 cut(s)	271, 278, 701, 770
MalI	GATC	2 cut(s)	159, 905
MbiI	CCGCTC	1 cut(s)	149
MboI	GATC	2 cut(s)	157, 903
MboII	GAAGA	2 cut(s)	118, 590
MflI	RGATCY	1 cut(s)	903
MhlI	GDGCHC	2 cut(s)	582, 1057
MluCI	AATT	4 cut(s)	47, 383, 839, 940
MlyI	GAGTC	2 cut(s)	275, 438
MmeI	TCCRAC	3 cut(s)	442, 734, 890
MroNI	GCCGGC	1 cut(s)	320
MroXI	GAANNNNTTC	1 cut(s)	206
MseI	TTAA	2 cut(s)	300, 843
MspA1I	CMGCKG	1 cut(s)	465
MspI	CCGG	2 cut(s)	321, 552
MspR9I	CCNGG	2 cut(s)	326, 826
MvaI	CCWGG	2 cut(s)	326, 826
MwoI	GCNNNNNNNGC	1 cut(s)	577
NaeI	GCCGGC	1 cut(s)	322
NdeII	GATC	2 cut(s)	157, 903
NgoMIV	GCCGGC	1 cut(s)	320
NlaIII	CATG	2 cut(s)	12, 237
NlaIV	GGNNCC	1 cut(s)	556
NmeAIII	GCCGAG	1 cut(s)	570
NmuCI	GTSAC	3 cut(s)	271, 278, 770
NspI	RCATGY	1 cut(s)	12
PaeI	GCATGC	1 cut(s)	12
PciSI	GCTCTTC	1 cut(s)	603
PdiI	GCCGGC	1 cut(s)	322
PdmI	GAANNNNTTC	1 cut(s)	206
PfeI	GAWTC	1 cut(s)	985
PflMI	CCANNNNNTGG	1 cut(s)	814
PfoI	TCCNGGA	1 cut(s)	824
PinAI	ACCGGT	1 cut(s)	551
PkrI	GCNGC	3 cut(s)	7, 257, 1070
PleI	GAGTC	2 cut(s)	275, 438
PpsI	GAGTC	2 cut(s)	275, 438
PshAI	GACNNNNGTC	1 cut(s)	448
Psp124BI	GAGCTC	1 cut(s)	582
Psp1406I	AACGTT	1 cut(s)	663
Psp6I	CCWGG	2 cut(s)	324, 824
PspFI	CCCAGC	1 cut(s)	563
PspGI	CCWGG	2 cut(s)	324, 824
PspN4I	GGNNCC	1 cut(s)	556
PspPI	GGNCC	3 cut(s)	410, 468, 817
PsrI	GAACNNNNNNTAC	2 cut(s)	947, 979
PstNI	CAGNNNCTG	3 cut(s)	248, 485, 952
PsuI	RGATCY	1 cut(s)	903
PvuII	CAGCTG	1 cut(s)	465
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
SacI	GAGCTC	1 cut(s)	582
SapI	GCTCTTC	1 cut(s)	603
SaqAI	TTAA	2 cut(s)	300, 843
SatI	GCNGC	3 cut(s)	6, 256, 1069
Sau3AI	GATC	2 cut(s)	157, 903
Sau96I	GGNCC	3 cut(s)	410, 468, 817
SchI	GAGTC	2 cut(s)	275, 438
ScrFI	CCNGG	2 cut(s)	326, 826
SduI	GDGCHC	2 cut(s)	582, 1057
SfaNI	GCATC	2 cut(s)	785, 1031
SgrAI	CRCCGGYG	1 cut(s)	551
SinI	GGWCC	2 cut(s)	468, 817
SmlI	CTYRAG	3 cut(s)	92, 446, 509
SmoI	CTYRAG	3 cut(s)	92, 446, 509
SphI	GCATGC	1 cut(s)	12
Sse9I	AATT	4 cut(s)	47, 383, 839, 940
SsiI	CCGC	7 cut(s)	6, 147, 295, 345, 423, 610, 1050
SspMI	CTAG	2 cut(s)	350, 605
SstI	GAGCTC	1 cut(s)	582
StyD4I	CCNGG	2 cut(s)	324, 824
TaiI	ACGT	3 cut(s)	225, 666, 960
TaqI	TCGA	3 cut(s)	528, 765, 1014
TasI	AATT	4 cut(s)	47, 383, 839, 940
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	985
Tru1I	TTAA	2 cut(s)	300, 843
Tru9I	TTAA	2 cut(s)	300, 843
TscAI	CASTG	3 cut(s)	253, 412, 927
TseFI	GTSAC	3 cut(s)	271, 278, 770
TseI	GCWGC	2 cut(s)	255, 1068
Tsp45I	GTSAC	3 cut(s)	271, 278, 770
TspDTI	ATGAA	1 cut(s)	643
TspGWI	ACGGA	3 cut(s)	124, 769, 769
TspRI	CASTG	3 cut(s)	253, 412, 927
Van91I	CCANNNNNTGG	1 cut(s)	814
VpaK11BI	GGWCC	2 cut(s)	468, 817
XapI	RAATTY	4 cut(s)	47, 383, 839, 940
XbaI	TCTAGA	1 cut(s)	604
XceI	RCATGY	1 cut(s)	12
XcmI	CCANNNNNNNNNTGG	1 cut(s)	832
XmnI	GAANNNNTTC	1 cut(s)	206
XspI	CTAG	2 cut(s)	350, 605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.