Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002823

Physical Location & Seq

Genomic Coordinates Forward (+)

26235595 .. 26237277

Gene Structure 1683 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44542

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGAGCTCAAGCTCTCCACCCTCCTCTGCTTTTCCCTGTTCTTCTCCACTATCCTAATCCCAACTCTCTCTGAGCTCTGCAACCCTCAAGACAAAAAGGTTCTCTTCGAAATCAAGACAGCCTTTAACAACCCCTACATCTTGTCCTCATGGAAATCCGACGCCGACTGCTGTACCGACTGGTACAACGTCGAGTGTGATCCCAACACCAACCGCATCAACTCCCTCACCATCTTCACCGACGACCGCCTCACCGGCCAAATCCCCACCCAAGTCGGAGACTTGCCCTACCTCGAAACCCTCGTGCTCCGCAAGCTCCCCAATCTCACCGGTCCCATCCAGCCCTCCATCGCCAAGCTCAAGCACCTCAAGATGCTCAGGCTCAGCTGGAACGGCCTCTCAGGTTCAGTCCCTGACTTCCTCAGCCAGCTCAAGAACCTCACCTTCCTCGAACTCAACTTCAACAACTTCACAGGCTCCATCCCCAGCTCTCTTTCTCAGCTACCGAACTTATTAGCCCTTCATCTAGACCGCAACCAGCTCACAGGTCATATTCCTAGCTCATTCGGACGATTCGTTGGCACCGTTCCAGATCTATTCCTCTCCCACAACCAGCTCACAGGCAAAATCCCAACCTCATTTGCTAACATGAACTTTGATCAAATAGACTTGTCACGCAACAAGCTTGAAGGCGATGCGTCAGTTATATTCGGGTTGAACAAGACGACCCAGATTGTGGATTTGTCGAGGAACATGCTGGACTTCGATCTGTCCAAGGTGGTGTTTTCGACAAGCTTGAGTTCGGTGGACTTGAACCATAACAGGATCACAGGGAGTATTCCGGAGCAGTTGACACAATTGGATAATTTGCAGTTGTTCAATGTGAGCTACAACAGGTTGTGTGGTCAGATTCCGGTAGGTGGGAAGTTGCAGAGCTTGGACACCACGTCGTATTTCCATAACCGATGCCTTTGTGGTGCCCCACTCCCAAGTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005911 GO:0008150 GO:0009505 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0030234 GO:0030312 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0050790 GO:0055044 GO:0065007 GO:0065009 GO:0071944 GO:0090353 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

332

Amino Acids

37.04

Weight (kDa)

6.29

Isoelectric Point (pI)

29.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	29 - 67	4.1e-10	Leucine rich repeat N-terminal domain
LRR_14	PF23598	86 - 179	1.9e-06	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06860 AT5G06870
fragaria_vesca	FvH4_6g22790
malus_domestica	MD14G1062500.v1.1 MD14G1062600.v1.1
prunus_persica	Prupe.7G072600_v2.0.a1 Prupe.7G072700_v2.0.a1 Prupe.7G072700_v2.0.a1
pyrus_communis	pycom14g05040
rosa_chinensis	RchiOBHm_Chr3g0480401 RchiOBHm_Chr3g0480411
rosa_laevigata	RLG00000023478 RLG00000023480 RLG00000023484 RLG00000023486
rosa_multiflora	Rmu_sc0002205.1_g000006 Rmu_sc0002205.1_g000018 Rmu_sc0002205.1_g000023 Rmu_sc0003742.1_g000007 Rmu_sc0006555.1_g000004 Rmu_sc0010988.1_g000004
rosa_roxburghii	Rroxscaffold_6G00401380 Rroxscaffold_6G00401390 Rroxscaffold_6G00401400
rosa_rugosa	Rorug03G0183600.1 Rorug03G0183700
rosa_samantha	Rh3AG235100 Rh3AG235200 Rh3BG267800 Rh3BG268000 Rh3BG268100 Rh3CG265000 Rh3CG265200 Rh3DG260900 Rh3DG261100 Rh5BG519600 Rh5CG543500
rosa_wichuraiana	Rw3G021110 Rw5G046270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	581, 977
AccB7I	CCANNNNNTGG	1 cut(s)	736
AccIII	TCCGGA	1 cut(s)	841
AciI	CCGC	4 cut(s)	214, 247, 310, 532
AclWI	GGATC	2 cut(s)	194, 833
AcoI	YGGCCR	1 cut(s)	256
AcyI	GRCGYC	1 cut(s)	162
AfaI	GTAC	2 cut(s)	175, 185
AfiI	CCNNNNNNNGG	2 cut(s)	736, 920
AgeI	ACCGGT	1 cut(s)	329
AgsI	TTSAA	5 cut(s)	463, 689, 718, 814, 880
AhdI	GACNNNNNGTC	1 cut(s)	946
AjiI	CACGTC	1 cut(s)	948
Alw21I	GWGCWC	3 cut(s)	9, 78, 309
Alw26I	GTCTC	1 cut(s)	273
AlwI	GGATC	2 cut(s)	194, 833
AlwNI	CAGNNNCTG	1 cut(s)	413
Aor13HI	TCCGGA	1 cut(s)	841
AoxI	GGCC	2 cut(s)	256, 394
AsiGI	ACCGGT	1 cut(s)	329
AspS9I	GGNCC	1 cut(s)	332
AsuHPI	GGTGA	5 cut(s)	220, 229, 244, 319, 433
AsuII	TTCGAA	1 cut(s)	108
AvaII	GGWCC	1 cut(s)	332
BaeGI	GKGCMC	1 cut(s)	982
BaeI	ACNNNNGTAYC	2 cut(s)	157, 190
BanI	GGYRCC	2 cut(s)	581, 977
BanII	GRGCYC	2 cut(s)	9, 78
BauI	CACGAG	1 cut(s)	302
Bbv12I	GWGCWC	3 cut(s)	9, 78, 309
BbvCI	CCTCAGC	1 cut(s)	422
BccI	CCATC	4 cut(s)	239, 344, 356, 488
BceAI	ACGGC	1 cut(s)	409
BcgI	CGANNNNNNTGC	2 cut(s)	736, 770
BclI	TGATCA	1 cut(s)	658
BcoDI	GTCTC	1 cut(s)	273
BfaI	CTAG	3 cut(s)	527, 558, 997
BglI	GCCNNNNNGGC	1 cut(s)	255
BglII	AGATCT	1 cut(s)	592
BlpI	GCTNAGC	1 cut(s)	383
Bme18I	GGWCC	1 cut(s)	332
BmeRI	GACNNNNNGTC	1 cut(s)	946
BmgBI	CACGTC	1 cut(s)	948
BmgT120I	GGNCC	1 cut(s)	332
BmiI	GGNNCC	4 cut(s)	334, 478, 583, 979
BmsI	GCATC	4 cut(s)	225, 363, 685, 956
Bpu10I	CCTNAGC	2 cut(s)	377, 422
Bpu1102I	GCTNAGC	1 cut(s)	383
Bpu14I	TTCGAA	1 cut(s)	108
BpuEI	CTTGAG	5 cut(s)	72, 344, 353, 416, 817
BsaHI	GRCGYC	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	774
BsaWI	WCCGGW	3 cut(s)	329, 841, 913
Bsc4I	CCNNNNNNNGG	2 cut(s)	736, 920
Bse118I	RCCGGY	2 cut(s)	254, 329
Bse1I	ACTGG	1 cut(s)	185
BseAI	TCCGGA	1 cut(s)	841
BseDI	CCNNGG	1 cut(s)	774
BseGI	GGATG	2 cut(s)	336, 480
BseLI	CCNNNNNNNGG	2 cut(s)	736, 920
BseMII	CTCAG	6 cut(s)	63, 391, 397, 414, 436, 512
BseNI	ACTGG	1 cut(s)	185
BseRI	GAGGAG	1 cut(s)	14
BseSI	GKGCMC	1 cut(s)	982
BseYI	CCCAGC	1 cut(s)	485
Bsh1285I	CGRYCG	1 cut(s)	247
BshFI	GGCC	2 cut(s)	258, 396
BshNI	GGYRCC	2 cut(s)	581, 977
BshTI	ACCGGT	1 cut(s)	329
BsiEI	CGRYCG	1 cut(s)	247
BsiHKAI	GWGCWC	3 cut(s)	9, 78, 309
BsiSI	CCGG	4 cut(s)	255, 330, 842, 914
BslFI	GGGAC	2 cut(s)	318, 395
BslI	CCNNNNNNNGG	2 cut(s)	736, 920
BsmAI	GTCTC	1 cut(s)	273
BsmFI	GGGAC	2 cut(s)	318, 395
BsnI	GGCC	2 cut(s)	258, 396
Bsp119I	TTCGAA	1 cut(s)	108
Bsp1286I	GDGCHC	4 cut(s)	9, 78, 309, 982
Bsp13I	TCCGGA	1 cut(s)	841
Bsp143I	GATC	5 cut(s)	199, 592, 658, 766, 825
Bsp1720I	GCTNAGC	1 cut(s)	383
BspACI	CCGC	4 cut(s)	214, 247, 310, 532
BspANI	GGCC	2 cut(s)	258, 396
BspCNI	CTCAG	6 cut(s)	64, 390, 396, 413, 435, 511
BspEI	TCCGGA	1 cut(s)	841
BspLI	GGNNCC	4 cut(s)	334, 478, 583, 979
BspPI	GGATC	2 cut(s)	194, 833
BspT104I	TTCGAA	1 cut(s)	108
BspT107I	GGYRCC	2 cut(s)	581, 977
BsrFI	RCCGGY	2 cut(s)	254, 329
BsrI	ACTGG	1 cut(s)	185
BssAI	RCCGGY	2 cut(s)	254, 329
BssECI	CCNNGG	1 cut(s)	774
BssMI	GATC	5 cut(s)	199, 592, 658, 766, 825
BssNI	GRCGYC	1 cut(s)	162
BssSI	CACGAG	1 cut(s)	302
BssT1I	CCWWGG	1 cut(s)	774
Bst2BI	CACGAG	1 cut(s)	302
Bst4CI	ACNGT	1 cut(s)	586
Bst6I	CTCTTC	1 cut(s)	110
BstACI	GRCGYC	1 cut(s)	162
BstBI	TTCGAA	1 cut(s)	108
BstC8I	GCNNGC	2 cut(s)	314, 428
BstDEI	CTNAG	6 cut(s)	72, 377, 383, 400, 422, 498
BstF5I	GGATG	2 cut(s)	336, 480
BstKTI	GATC	5 cut(s)	202, 595, 661, 769, 828
BstMAI	GTCTC	1 cut(s)	273
BstMBI	GATC	5 cut(s)	199, 592, 658, 766, 825
BstMCI	CGRYCG	1 cut(s)	247
BstMWI	GCNNNNNNNGC	3 cut(s)	255, 313, 393
BstNSI	RCATGY	1 cut(s)	757
BstSLI	GKGCMC	1 cut(s)	982
BstX2I	RGATCY	1 cut(s)	592
BstYI	RGATCY	1 cut(s)	592
BsuRI	GGCC	2 cut(s)	258, 396
BtgZI	GCGATG	2 cut(s)	334, 708
BtrI	CACGTC	1 cut(s)	948
BtsCI	GGATG	2 cut(s)	336, 480
Cac8I	GCNNGC	2 cut(s)	314, 428
CaiI	CAGNNNCTG	1 cut(s)	413
Cfr10I	RCCGGY	2 cut(s)	254, 329
Cfr13I	GGNCC	1 cut(s)	332
CseI	GACGC	2 cut(s)	170, 687
Csp6I	GTAC	2 cut(s)	174, 184
CspAI	ACCGGT	1 cut(s)	329
CviAII	CATG	3 cut(s)	150, 649, 754
CviQI	GTAC	2 cut(s)	174, 184
DdeI	CTNAG	6 cut(s)	72, 377, 383, 400, 422, 498
DpnI	GATC	5 cut(s)	201, 594, 660, 768, 827
DpnII	GATC	5 cut(s)	199, 592, 658, 766, 825
DriI	GACNNNNNGTC	1 cut(s)	946
EaeI	YGGCCR	1 cut(s)	256
Eam1104I	CTCTTC	1 cut(s)	110
Eam1105I	GACNNNNNGTC	1 cut(s)	946
EarI	CTCTTC	1 cut(s)	110
Ecl136II	GAGCTC	2 cut(s)	7, 76
Eco130I	CCWWGG	1 cut(s)	774
Eco24I	GRGCYC	2 cut(s)	9, 78
Eco47I	GGWCC	1 cut(s)	332
Eco53kI	GAGCTC	2 cut(s)	7, 76
EcoICRI	GAGCTC	2 cut(s)	7, 76
EcoT14I	CCWWGG	1 cut(s)	774
EcoT38I	GRGCYC	2 cut(s)	9, 78
ErhI	CCWWGG	1 cut(s)	774
FaeI	CATG	3 cut(s)	153, 652, 757
FaiI	YATR	7 cut(s)	151, 552, 650, 707, 755, 819, 960
FalI	AAGNNNNNCTT	4 cut(s)	89, 121, 107, 139
FaqI	GGGAC	2 cut(s)	318, 395
FatI	CATG	3 cut(s)	149, 648, 753
FbaI	TGATCA	1 cut(s)	658
FokI	GGATG	2 cut(s)	323, 467
FriOI	GRGCYC	2 cut(s)	9, 78
FspBI	CTAG	3 cut(s)	527, 558, 997
GsaI	CCCAGC	1 cut(s)	489
HaeIII	GGCC	2 cut(s)	258, 396
HapII	CCGG	4 cut(s)	255, 330, 842, 914
HgaI	GACGC	2 cut(s)	170, 687
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	3 cut(s)	153, 652, 757
HincII	GTYRAC	1 cut(s)	852
HindII	GTYRAC	1 cut(s)	852
HindIII	AAGCTT	2 cut(s)	683, 793
HinfI	GANTC	2 cut(s)	573, 910
HpaII	CCGG	4 cut(s)	255, 330, 842, 914
HphI	GGTGA	5 cut(s)	220, 229, 244, 319, 433
Hpy166II	GTNNAC	2 cut(s)	808, 852
Hpy188I	TCNGA	5 cut(s)	73, 160, 278, 569, 909
Hpy188III	TCNNGA	7 cut(s)	89, 115, 370, 433, 527, 590, 842
Hpy8I	GTNNAC	2 cut(s)	808, 852
Hpy99I	CGWCG	4 cut(s)	164, 194, 245, 952
HpyAV	CCTTC	3 cut(s)	454, 530, 683
HpyCH4III	ACNGT	1 cut(s)	586
HpyCH4IV	ACGT	2 cut(s)	189, 947
HpyCH4V	TGCA	3 cut(s)	81, 871, 931
HpyF10VI	GCNNNNNNNGC	3 cut(s)	255, 313, 393
HpyF3I	CTNAG	6 cut(s)	72, 377, 383, 400, 422, 498
HpySE526I	ACGT	2 cut(s)	189, 947
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	3 cut(s)	153, 652, 757
Kpn2I	TCCGGA	1 cut(s)	841
Ksp22I	TGATCA	1 cut(s)	658
Kzo9I	GATC	5 cut(s)	199, 592, 658, 766, 825
LmnI	GCTCC	5 cut(s)	4, 312, 321, 482, 844
LweI	GCATC	4 cut(s)	225, 363, 685, 956
MaeI	CTAG	3 cut(s)	527, 558, 997
MaeII	ACGT	2 cut(s)	189, 947
MaeIII	GTNAC	1 cut(s)	672
MalI	GATC	5 cut(s)	201, 594, 660, 768, 827
MboI	GATC	5 cut(s)	199, 592, 658, 766, 825
MboII	GAAGA	3 cut(s)	34, 97, 226
MfeI	CAATTG	1 cut(s)	857
MflI	RGATCY	1 cut(s)	592
MhlI	GDGCHC	4 cut(s)	9, 78, 309, 982
MluCI	AATT	2 cut(s)	857, 865
MmeI	TCCRAC	2 cut(s)	183, 256
MroI	TCCGGA	1 cut(s)	841
MseI	TTAA	1 cut(s)	126
MspA1I	CMGCKG	1 cut(s)	387
MspI	CCGG	4 cut(s)	255, 330, 842, 914
MunI	CAATTG	1 cut(s)	857
MwoI	GCNNNNNNNGC	3 cut(s)	255, 313, 393
NdeII	GATC	5 cut(s)	199, 592, 658, 766, 825
NlaIII	CATG	3 cut(s)	153, 652, 757
NlaIV	GGNNCC	4 cut(s)	334, 478, 583, 979
NmuCI	GTSAC	1 cut(s)	672
NspI	RCATGY	1 cut(s)	757
NspV	TTCGAA	1 cut(s)	108
PcsI	WCGNNNNNNNCGW	3 cut(s)	300, 573, 582
PfeI	GAWTC	2 cut(s)	573, 910
PflMI	CCANNNNNTGG	1 cut(s)	736
PinAI	ACCGGT	1 cut(s)	329
Psp124BI	GAGCTC	2 cut(s)	9, 78
PspFI	CCCAGC	1 cut(s)	485
PspN4I	GGNNCC	4 cut(s)	334, 478, 583, 979
PspPI	GGNCC	1 cut(s)	332
PstNI	CAGNNNCTG	1 cut(s)	413
PsuI	RGATCY	1 cut(s)	592
PvuII	CAGCTG	1 cut(s)	387
RsaI	GTAC	2 cut(s)	175, 185
RsaNI	GTAC	2 cut(s)	174, 184
SacI	GAGCTC	2 cut(s)	9, 78
SaqAI	TTAA	1 cut(s)	126
Sau3AI	GATC	5 cut(s)	199, 592, 658, 766, 825
Sau96I	GGNCC	1 cut(s)	332
SduI	GDGCHC	4 cut(s)	9, 78, 309, 982
SfaNI	GCATC	4 cut(s)	225, 363, 685, 956
SfuI	TTCGAA	1 cut(s)	108
SinI	GGWCC	1 cut(s)	332
SmlI	CTYRAG	6 cut(s)	8, 87, 359, 368, 431, 796
SmoI	CTYRAG	6 cut(s)	8, 87, 359, 368, 431, 796
Sse9I	AATT	2 cut(s)	857, 865
SsiI	CCGC	4 cut(s)	214, 247, 310, 532
SspMI	CTAG	3 cut(s)	527, 558, 997
SstI	GAGCTC	2 cut(s)	9, 78
StyI	CCWWGG	1 cut(s)	774
TaaI	ACNGT	1 cut(s)	586
TaiI	ACGT	2 cut(s)	192, 950
TaqI	TCGA	7 cut(s)	108, 192, 294, 450, 746, 765, 788
TasI	AATT	2 cut(s)	857, 865
TfiI	GAWTC	2 cut(s)	573, 910
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TseFI	GTSAC	1 cut(s)	672
Tsp45I	GTSAC	1 cut(s)	672
TspDTI	ATGAA	2 cut(s)	512, 665
Van91I	CCANNNNNTGG	1 cut(s)	736
VpaK11BI	GGWCC	1 cut(s)	332
XbaI	TCTAGA	1 cut(s)	526
XceI	RCATGY	1 cut(s)	757
XspI	CTAG	3 cut(s)	527, 558, 997

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.