Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0002823

Physical Location & Seq

Genomic Coordinates Forward (+)

6656830 .. 6657842

Gene Structure 1013 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1062600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGAGCTCAAGTTCTCCACCTTCCTCTCCCTAACCCTACTCTTCTCCTCCGTCCTAAACCCCGCTCTCTCCGATCTCTGCAACCCCGACGACAAAAAAGTCCTCCTGCAAATCAAGAAAGCCTTCGGCGACCCCTACGTCTTGACCTCATGGAAATCAGACACTGACTGTTGTGATTGGTACTGCGTCACCTGTGACTCCACCACAAACCGCATCAACTCCCTCACCATCTTCGCCGGCCAGGTCTCCGGCCAAATCCCCGCCCTAGTCGGAGACTTACCGTACCTTGAAACCCTTGAATTCCACAAGCAACCCAATCTCACTGGCCCAATCCAACCCGCCATTGCCAAGCTCAAAGGACTCAAGAGTCTCAGGCTCAGCTGGACCAACCTCTCAGGCTCTGTCCCTGACTTCCTCAGCCAACTCAAGAACCTCACATTCCTCGACCTCTCCTTCAACAACCTCACCGGCGCCATCCCCAGCTCGCTTTCTCAGCTCCCAAACCTCAACGCTCTTCATCTAGACCGCAATAAGCTCACAGGTCATATTCCGATATCGCTTGGGCAGTTCATTGGCAACGTTCCAGACCTGTATCTCTCCCACAACCAGCTCTCTGGCAACATTCCAACCTCATTCGCCCAGATGGACTTCGGCAGCATAGACTTATCACGGAACAAGCTCGAAGGTGACGCATCCGTGATATTTGGGCTGAACAAGACAACGCAGATTGTGGATCTGTCCAGGAACTTGCTGGAATTTAATCTGTCAAAGGTGGAGTTTCCGACAAGCTTGACCTCGCTGGATATCAACCACAATAAGATCTACGGGAGTATCCCAGTGGAGTTTACCCAACTGAATTTCCAGTTCCTGAACGTGAGCTACAACAGGCTGTGTGGTCAGATTCCGGTGGGTGGAAAGTTGCAGAGCTTCGACGAGTATTCTTATTTCCATAACCGATGCTTGTGCGGTGCTCCACTCCCAAGCTGCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005911 GO:0008150 GO:0009505 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0030234 GO:0030312 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0050790 GO:0055044 GO:0065007 GO:0065009 GO:0071944 GO:0090353 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

331

Amino Acids

36.49

Weight (kDa)

6.29

Isoelectric Point (pI)

28.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	29 - 66	1.4e-12	Leucine rich repeat N-terminal domain
LRR_14	PF23598	73 - 179	1.4e-06	Leucine-rich repeat region
LRR_8	PF13855	120 - 179	2.4e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06860 AT5G06870
fragaria_vesca	FvH4_6g22790
malus_domestica	MD14G1062500.v1.1 MD14G1062600.v1.1
prunus_persica	Prupe.7G072600_v2.0.a1 Prupe.7G072700_v2.0.a1 Prupe.7G072700_v2.0.a1
pyrus_communis	pycom14g05040
rosa_chinensis	RchiOBHm_Chr3g0480401 RchiOBHm_Chr3g0480411
rosa_laevigata	RLG00000023478 RLG00000023480 RLG00000023484 RLG00000023486
rosa_multiflora	Rmu_sc0002205.1_g000006 Rmu_sc0002205.1_g000018 Rmu_sc0002205.1_g000023 Rmu_sc0003742.1_g000007 Rmu_sc0006555.1_g000004 Rmu_sc0010988.1_g000004
rosa_roxburghii	Rroxscaffold_6G00401380 Rroxscaffold_6G00401390 Rroxscaffold_6G00401400
rosa_rugosa	Rorug03G0183600.1 Rorug03G0183700
rosa_samantha	Rh3AG235100 Rh3AG235200 Rh3BG267800 Rh3BG268000 Rh3BG268100 Rh3CG265000 Rh3CG265200 Rh3DG260900 Rh3DG261100 Rh5BG519600 Rh5CG543500
rosa_wichuraiana	Rw3G021110 Rw5G046270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	98, 137, 366
AccB1I	GGYRCC	1 cut(s)	470
AccBSI	CCGCTC	1 cut(s)	65
AciI	CCGC	6 cut(s)	63, 211, 261, 339, 526, 966
AclI	AACGTT	1 cut(s)	579
AclWI	GGATC	1 cut(s)	741
AcoI	YGGCCR	2 cut(s)	238, 250
AcsI	RAATTY	3 cut(s)	299, 755, 856
AcyI	GRCGYC	1 cut(s)	471
AfaI	GTAC	2 cut(s)	182, 284
AfiI	CCNNNNNNNGG	1 cut(s)	911
AgsI	TTSAA	3 cut(s)	290, 299, 457
AjnI	CCWGG	2 cut(s)	240, 740
AloI	GAACNNNNNNTCC	1 cut(s)	28
Alw21I	GWGCWC	2 cut(s)	9, 973
Alw26I	GTCTC	3 cut(s)	250, 267, 374
AlwI	GGATC	1 cut(s)	741
AlwNI	CAGNNNCTG	3 cut(s)	164, 401, 868
AoxI	GGCC	3 cut(s)	238, 250, 325
ApeKI	GCWGC	2 cut(s)	654, 984
ApoI	RAATTY	3 cut(s)	299, 755, 856
Asp700I	GAANNNNTTC	1 cut(s)	122
AspLEI	GCGC	1 cut(s)	473
AspS9I	GGNCC	2 cut(s)	326, 384
AsuHPI	GGTGA	4 cut(s)	181, 217, 457, 698
AvaII	GGWCC	1 cut(s)	384
BaeI	ACNNNNGTAYC	2 cut(s)	814, 847
BanI	GGYRCC	1 cut(s)	470
BanII	GRGCYC	1 cut(s)	9
Bbv12I	GWGCWC	2 cut(s)	9, 973
BbvCI	CCTCAGC	1 cut(s)	416
BbvI	GCAGC	2 cut(s)	666, 971
BccI	CCATC	3 cut(s)	236, 482, 637
BcgI	CGANNNNNNTGC	2 cut(s)	945, 979
BciT130I	CCWGG	2 cut(s)	242, 742
BciVI	GTATCC	1 cut(s)	842
BcoDI	GTCTC	3 cut(s)	250, 267, 374
BfaI	CTAG	2 cut(s)	266, 521
BfoI	RGCGCY	1 cut(s)	474
BfuI	GTATCC	1 cut(s)	842
BglII	AGATCT	1 cut(s)	819
BisI	GCNGC	2 cut(s)	655, 985
BlpI	GCTNAGC	1 cut(s)	377
BlsI	GCNGC	2 cut(s)	656, 986
Bme1390I	CCNGG	2 cut(s)	242, 742
Bme18I	GGWCC	1 cut(s)	384
BmgT120I	GGNCC	2 cut(s)	326, 384
BmiI	GGNNCC	1 cut(s)	472
BmrFI	CCNGG	2 cut(s)	242, 742
BmrI	ACTGGG	1 cut(s)	830
BmsI	GCATC	3 cut(s)	222, 701, 947
BmuI	ACTGGG	1 cut(s)	830
Bpu10I	CCTNAGC	1 cut(s)	416
Bpu1102I	GCTNAGC	1 cut(s)	377
BpuEI	CTTGAG	2 cut(s)	347, 410
BsaHI	GRCGYC	1 cut(s)	471
BsaI	GGTCTC	1 cut(s)	250
BsaWI	WCCGGW	1 cut(s)	904
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	911
Bse118I	RCCGGY	2 cut(s)	236, 467
Bse1I	ACTGG	3 cut(s)	328, 836, 862
Bse3DI	GCAATG	1 cut(s)	342
BseBI	CCWGG	2 cut(s)	242, 742
BseGI	GGATG	2 cut(s)	474, 692
BseLI	CCNNNNNNNGG	1 cut(s)	911
BseMI	GCAATG	1 cut(s)	342
BseMII	CTCAG	5 cut(s)	385, 391, 408, 430, 506
BseNI	ACTGG	3 cut(s)	328, 836, 862
BseRI	GAGGAG	1 cut(s)	37
BseXI	GCAGC	2 cut(s)	666, 971
BseYI	CCCAGC	1 cut(s)	479
BshFI	GGCC	3 cut(s)	240, 252, 327
BshNI	GGYRCC	1 cut(s)	470
BsiHKAI	GWGCWC	2 cut(s)	9, 973
BsiSI	CCGG	4 cut(s)	237, 249, 468, 905
BslFI	GGGAC	1 cut(s)	389
BslI	CCNNNNNNNGG	1 cut(s)	911
BsmAI	GTCTC	3 cut(s)	250, 267, 374
BsmFI	GGGAC	1 cut(s)	389
BsnI	GGCC	3 cut(s)	240, 252, 327
Bso31I	GGTCTC	1 cut(s)	250
Bsp1286I	GDGCHC	2 cut(s)	9, 973
Bsp143I	GATC	3 cut(s)	73, 733, 819
Bsp1720I	GCTNAGC	1 cut(s)	377
BspACI	CCGC	6 cut(s)	63, 211, 261, 339, 526, 966
BspANI	GGCC	3 cut(s)	240, 252, 327
BspCNI	CTCAG	5 cut(s)	384, 390, 407, 429, 505
BspLI	GGNNCC	1 cut(s)	472
BspPI	GGATC	1 cut(s)	741
BspQI	GCTCTTC	1 cut(s)	519
BspT107I	GGYRCC	1 cut(s)	470
BspTNI	GGTCTC	1 cut(s)	250
BsrBI	CCGCTC	1 cut(s)	65
BsrDI	GCAATG	1 cut(s)	342
BsrFI	RCCGGY	2 cut(s)	236, 467
BsrI	ACTGG	3 cut(s)	328, 836, 862
BssAI	RCCGGY	2 cut(s)	236, 467
BssMI	GATC	3 cut(s)	73, 733, 819
BssNI	GRCGYC	1 cut(s)	471
Bst2UI	CCWGG	2 cut(s)	242, 742
Bst4CI	ACNGT	2 cut(s)	170, 282
Bst6I	CTCTTC	2 cut(s)	47, 519
BstACI	GRCGYC	1 cut(s)	471
BstC8I	GCNNGC	2 cut(s)	238, 485
BstDEI	CTNAG	5 cut(s)	371, 377, 394, 416, 492
BstF5I	GGATG	2 cut(s)	474, 692
BstH2I	RGCGCY	1 cut(s)	474
BstHHI	GCGC	1 cut(s)	473
BstKTI	GATC	3 cut(s)	76, 736, 822
BstMAI	GTCTC	3 cut(s)	250, 267, 374
BstMBI	GATC	3 cut(s)	73, 733, 819
BstMWI	GCNNNNNNNGC	1 cut(s)	493
BstNI	CCWGG	2 cut(s)	242, 742
BstSCI	CCNGG	2 cut(s)	240, 740
BstV1I	GCAGC	2 cut(s)	666, 971
BstX2I	RGATCY	2 cut(s)	733, 819
BstXI	CCANNNNNNTGG	1 cut(s)	614
BstYI	RGATCY	2 cut(s)	733, 819
BsuI	GTATCC	1 cut(s)	842
BsuRI	GGCC	3 cut(s)	240, 252, 327
BtsCI	GGATG	2 cut(s)	474, 692
BtsIMutI	CAGTG	3 cut(s)	162, 321, 843
Cac8I	GCNNGC	2 cut(s)	238, 485
CaiI	CAGNNNCTG	3 cut(s)	164, 401, 868
CfoI	GCGC	1 cut(s)	473
Cfr10I	RCCGGY	2 cut(s)	236, 467
Cfr13I	GGNCC	2 cut(s)	326, 384
CseI	GACGC	2 cut(s)	175, 698
Csp6I	GTAC	2 cut(s)	181, 283
CviAII	CATG	1 cut(s)	150
CviQI	GTAC	2 cut(s)	181, 283
DdeI	CTNAG	5 cut(s)	371, 377, 394, 416, 492
DinI	GGCGCC	1 cut(s)	472
DpnI	GATC	3 cut(s)	75, 735, 821
DpnII	GATC	3 cut(s)	73, 733, 819
DrdI	GACNNNNNNGTC	3 cut(s)	98, 137, 366
DseDI	GACNNNNNNGTC	3 cut(s)	98, 137, 366
EaeI	YGGCCR	2 cut(s)	238, 250
Eam1104I	CTCTTC	2 cut(s)	47, 519
EarI	CTCTTC	2 cut(s)	47, 519
Ecl136II	GAGCTC	1 cut(s)	7
Eco24I	GRGCYC	1 cut(s)	9
Eco31I	GGTCTC	1 cut(s)	250
Eco32I	GATATC	2 cut(s)	555, 805
Eco47I	GGWCC	1 cut(s)	384
Eco53kI	GAGCTC	1 cut(s)	7
EcoICRI	GAGCTC	1 cut(s)	7
EcoRI	GAATTC	1 cut(s)	299
EcoRII	CCWGG	2 cut(s)	240, 740
EcoRV	GATATC	2 cut(s)	555, 805
EcoT38I	GRGCYC	1 cut(s)	9
EgeI	GGCGCC	1 cut(s)	472
EheI	GGCGCC	1 cut(s)	472
FaeI	CATG	1 cut(s)	153
FaiI	YATR	4 cut(s)	151, 546, 659, 951
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FaqI	GGGAC	1 cut(s)	389
FatI	CATG	1 cut(s)	149
FauI	CCCGC	3 cut(s)	70, 268, 346
Fnu4HI	GCNGC	2 cut(s)	655, 985
FokI	GGATG	2 cut(s)	461, 679
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	2 cut(s)	655, 985
FspBI	CTAG	2 cut(s)	266, 521
GlaI	GCGC	1 cut(s)	472
GluI	GCNGC	2 cut(s)	655, 985
GsaI	CCCAGC	1 cut(s)	483
HaeII	RGCGCY	1 cut(s)	474
HaeIII	GGCC	3 cut(s)	240, 252, 327
HapII	CCGG	4 cut(s)	237, 249, 468, 905
HgaI	GACGC	2 cut(s)	175, 698
HhaI	GCGC	1 cut(s)	473
Hin1I	GRCGYC	1 cut(s)	471
Hin1II	CATG	1 cut(s)	153
Hin6I	GCGC	1 cut(s)	471
HinP1I	GCGC	1 cut(s)	471
HindIII	AAGCTT	1 cut(s)	787
HinfI	GANTC	4 cut(s)	197, 360, 367, 901
HpaII	CCGG	4 cut(s)	237, 249, 468, 905
HphI	GGTGA	4 cut(s)	181, 217, 457, 698
Hpy166II	GTNNAC	1 cut(s)	846
Hpy188I	TCNGA	6 cut(s)	73, 160, 272, 552, 783, 900
Hpy188III	TCNNGA	7 cut(s)	115, 142, 364, 427, 521, 584, 868
Hpy8I	GTNNAC	1 cut(s)	846
Hpy99I	CGWCG	2 cut(s)	92, 935
HpyAV	CCTTC	4 cut(s)	31, 133, 463, 677
HpyCH4III	ACNGT	2 cut(s)	170, 282
HpyCH4IV	ACGT	3 cut(s)	138, 579, 873
HpyCH4V	TGCA	4 cut(s)	81, 109, 922, 987
HpyF10VI	GCNNNNNNNGC	1 cut(s)	493
HpyF3I	CTNAG	5 cut(s)	371, 377, 394, 416, 492
HpySE526I	ACGT	3 cut(s)	138, 579, 873
Hsp92I	GRCGYC	1 cut(s)	471
Hsp92II	CATG	1 cut(s)	153
HspAI	GCGC	1 cut(s)	471
KasI	GGCGCC	1 cut(s)	470
KroI	GCCGGC	1 cut(s)	236
KroNI	GCCGGC	1 cut(s)	238
Kzo9I	GATC	3 cut(s)	73, 733, 819
LguI	GCTCTTC	1 cut(s)	519
LmnI	GCTCC	3 cut(s)	4, 501, 976
Lsp1109I	GCAGC	2 cut(s)	666, 971
LweI	GCATC	3 cut(s)	222, 701, 947
MaeI	CTAG	2 cut(s)	266, 521
MaeII	ACGT	3 cut(s)	138, 579, 873
MaeIII	GTNAC	3 cut(s)	187, 194, 686
MalI	GATC	3 cut(s)	75, 735, 821
MbiI	CCGCTC	1 cut(s)	65
MboI	GATC	3 cut(s)	73, 733, 819
MboII	GAAGA	3 cut(s)	34, 223, 506
MflI	RGATCY	2 cut(s)	733, 819
MhlI	GDGCHC	2 cut(s)	9, 973
MluCI	AATT	3 cut(s)	299, 755, 856
Mly113I	GGCGCC	1 cut(s)	471
MlyI	GAGTC	3 cut(s)	191, 354, 376
MmeI	TCCRAC	4 cut(s)	250, 358, 650, 806
MroNI	GCCGGC	1 cut(s)	236
MroXI	GAANNNNTTC	1 cut(s)	122
MseI	TTAA	1 cut(s)	759
MspA1I	CMGCKG	1 cut(s)	381
MspI	CCGG	4 cut(s)	237, 249, 468, 905
MspR9I	CCNGG	2 cut(s)	242, 742
MvaI	CCWGG	2 cut(s)	242, 742
MwoI	GCNNNNNNNGC	1 cut(s)	493
NaeI	GCCGGC	1 cut(s)	238
NarI	GGCGCC	1 cut(s)	471
NdeII	GATC	3 cut(s)	73, 733, 819
NgoMIV	GCCGGC	1 cut(s)	236
NlaIII	CATG	1 cut(s)	153
NlaIV	GGNNCC	1 cut(s)	472
NmuCI	GTSAC	3 cut(s)	187, 194, 686
PciSI	GCTCTTC	1 cut(s)	519
PdiI	GCCGGC	1 cut(s)	238
PdmI	GAANNNNTTC	1 cut(s)	122
PfeI	GAWTC	1 cut(s)	901
PfoI	TCCNGGA	1 cut(s)	740
PkrI	GCNGC	2 cut(s)	656, 986
PleI	GAGTC	3 cut(s)	191, 354, 375
PluTI	GGCGCC	1 cut(s)	474
PpsI	GAGTC	3 cut(s)	191, 354, 375
Psp124BI	GAGCTC	1 cut(s)	9
Psp1406I	AACGTT	1 cut(s)	579
Psp6I	CCWGG	2 cut(s)	240, 740
PspFI	CCCAGC	1 cut(s)	479
PspGI	CCWGG	2 cut(s)	240, 740
PspN4I	GGNNCC	1 cut(s)	472
PspPI	GGNCC	2 cut(s)	326, 384
PsrI	GAACNNNNNNTAC	2 cut(s)	863, 895
PstNI	CAGNNNCTG	3 cut(s)	164, 401, 868
PsuI	RGATCY	2 cut(s)	733, 819
PvuII	CAGCTG	1 cut(s)	381
RsaI	GTAC	2 cut(s)	182, 284
RsaNI	GTAC	2 cut(s)	181, 283
SacI	GAGCTC	1 cut(s)	9
SapI	GCTCTTC	1 cut(s)	519
SaqAI	TTAA	1 cut(s)	759
SatI	GCNGC	2 cut(s)	655, 985
Sau3AI	GATC	3 cut(s)	73, 733, 819
Sau96I	GGNCC	2 cut(s)	326, 384
SchI	GAGTC	3 cut(s)	191, 354, 376
ScrFI	CCNGG	2 cut(s)	242, 742
SduI	GDGCHC	2 cut(s)	9, 973
SfaNI	GCATC	3 cut(s)	222, 701, 947
SfoI	GGCGCC	1 cut(s)	472
SgrAI	CRCCGGYG	1 cut(s)	467
SinI	GGWCC	1 cut(s)	384
SmlI	CTYRAG	3 cut(s)	8, 362, 425
SmoI	CTYRAG	3 cut(s)	8, 362, 425
Sse9I	AATT	3 cut(s)	299, 755, 856
SsiI	CCGC	6 cut(s)	63, 211, 261, 339, 526, 966
SspDI	GGCGCC	1 cut(s)	470
SspMI	CTAG	2 cut(s)	266, 521
SstI	GAGCTC	1 cut(s)	9
StyD4I	CCNGG	2 cut(s)	240, 740
TaaI	ACNGT	2 cut(s)	170, 282
TaiI	ACGT	3 cut(s)	141, 582, 876
TaqI	TCGA	3 cut(s)	444, 681, 930
TasI	AATT	3 cut(s)	299, 755, 856
TfiI	GAWTC	1 cut(s)	901
Tru1I	TTAA	1 cut(s)	759
Tru9I	TTAA	1 cut(s)	759
TscAI	CASTG	3 cut(s)	169, 328, 843
TseFI	GTSAC	3 cut(s)	187, 194, 686
TseI	GCWGC	2 cut(s)	654, 984
Tsp45I	GTSAC	3 cut(s)	187, 194, 686
TspDTI	ATGAA	2 cut(s)	506, 559
TspGWI	ACGGA	3 cut(s)	40, 685, 685
TspRI	CASTG	3 cut(s)	169, 328, 843
VpaK11BI	GGWCC	1 cut(s)	384
XapI	RAATTY	3 cut(s)	299, 755, 856
XbaI	TCTAGA	1 cut(s)	520
XcmI	CCANNNNNNNNNTGG	1 cut(s)	748
XmnI	GAANNNNTTC	1 cut(s)	122
XspI	CTAG	2 cut(s)	266, 521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.