Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003328

Physical Location & Seq

Genomic Coordinates Forward (+)

2293114 .. 2298976

Gene Structure 5863 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G07290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2724 bp

ATGCCATCTGATATATTGGAACCGAGAGGTGTGCCTACACCTTCTCATTTTCATGAAGACATTCGCATCACTCCTGAGAAACAATTTGGTTTCATGAAAAACAATCCAATGCCTGAAGGTGGTGTGGATAGAAGTTCAAATCTACCGACTAGTTCTTGGACATCTGACAGTTACCAGCTCTCTCAACAATCAAGCTTGTCTGGGGCGCTTCCCTCCTTTATCCCTAATGGAAGAACAACTACAAATGATACTCACTGGGAGAGCAGTCTATTCTCAAGCTCTCTGTCTGACCTATTTAGTAGAAAATTACGACTACCAAGAAGTGATAAGTTAGCCTTTATGTCTGCAAACCGCGAGGAAGAACCTTCAGAGTCCTTAGAAGAAATGGAGGCGCAAACTATTGGAAATCTTCTTCCTGATGAGGATGATCTTTTTGCAGAAGTGGTTGGTGAGGGTGTCCATAAGTCTCGTGCCAATGGTGGAGATGATTTGGATGATTGTGACCTATTCAGCAGTGTTGGTGGCATGGAACTAGATGGAGATGTTTTCTCCTCTGTCAGTCAAAGAGATGGCAAGAGAGGCAGCAATGTTTCGACTGTTGCTGAGCATCCTCAAGGAGAAATTTTATCCAGAATACTTTTTGTTAGGAATGTGGATAGCAGCATTGAAGATTGCGAGCTGGGGGTCCTTTTTAAGCAATTTGGAGATGTTCGGGCTCTTCATACAGCTGGCAAGAATCGTGGCTTTATCATGGTATCATACTATGATATAAGAGCTGCTCAGAAAGCGGCAAGAGCACTCCACGGTAGGCTCTTAAGGGGAAGGAAGCTTGATATTCGCTATTCTATTCCAAAGGAAAATCCTAAAGAGAACTCCAGCGAAGGAGCCTTGTGGGTAAATAATCTTGATTCTTCTATATCCAATGAAGAGCTTCACGGTATATTCAGTTCATATGGAGAAATTAGAGAGGTTCGTAGAACGATGCATGAGAACTCACAAGTTTACATAGAGTTCTTTGATGTTCGAAAGGCAAAGGTTGCACTTCAAGGACTAAATGGACTTGAGGTCGCTGGGAGGCAGCTTAAACTTGCACCAACCTGTCCAGAGGGTACAAGTTTCTGGCCACAGTTCGCTTCAGATGATGGTGAGGGGGGTCTACCTAAAATGGCTTTTAATAACCTATCATCAGCTCACATGGGGAGACATTTCCCAGGAATATTAGCTTCAACCTCCATTGATGGTGGATCTATTCGAGGTATGCACAATTCTGTTGGGTCACCTATGAACTCCTTCATTGAACGTCATCAGAGTCTCGATGTTCCTATTGGTTTGCCACCATCGGCAAGAGTCATCTCAGCTAGCAAGCCTGTTGGTCTTCAGGAGTTTGGAAACCCATTTGATAATTCGAAAACGGGGATCCAAAGTATGCCAAATCTCCATCCTCATTTTCCTGATTACCTTGACAACTTTGCAAGCGGTAGTCCATATAAATCCTCTACGACATTCTCTGAAATGGTAAGCGATGGCCAAAAAGCAAATGAGGGCTTTATGATGAGCAATGTTCGTGGAGTGGGAGTAGATGGATTTAATGGAGGTGTCATAGGATCTCCCATAAATCAAGGATCCCATCGTGGTAACCTCAACTTATGGAGTAACTCTAACAGTCAGCAACATAATCAGTCAAGTGGCATGATGTGGCCTAACTCACCATCTCGCGTCAACGGCGTTCCCTCTCAGCGCATCCCACCTGTTACTGCATTCTCTAGAGCATCTCCTTTAATGGTGAACATGGCATCATCGCCTGTGCACCACCACATTGGATCTGCCCCGGTATTAAACTCACCTTTTTGGGATAGAAGACAGGCATATGTAGCTGAATCTCCAGAATCTTCAGGATTTCACTTAGGTTCTCCCGGTAGCATGGGATTTCCTGGCTCGTCTCCCTCACATCCAATGGATTTTGGTTCTCATAAGGTTTTTTCTCATGTCGGTGGGAATCGCATGGAGGCCAATTCAAAAAATGCTGTATTACGATCATCGCGACAGATGCCTCACCTCTTTACTGGAAGGAGCCCAATGCTTTCAGTGTCAGGCTCATTTGACTTGCCTAATGAACGATACAGGAATCTCTCTCACCGAAGAAGTGAATCTAACTCTAGTAATGCTGAAAAGAAACTGTATGAGCTTGATGTAGATCGCATATTACGTGGGGAAGACAGTAGAACAACGTTGATGATAAAGAACATTCCTAATAAGTATACTTCTAAGATGCTCCTAGCTGCTATTGATGAGTACTGTAAAGGAACATATGATTTTCTTTATTTGCCAATTGACTTCAAGAATAAATGCAATGTCGGATATGCTTTCATCAACCTTATCGAACCTGAAAATATTGTTCCGTTTTATAAGGCATTCAACGGTAAGAAATGGGAAAAGTTCAACAGCGAGAAGGTGGCATCGCTTGCATATGGTCGGATTCAGGGGAAATCAGCTCTTATTGCCCATTTCCAGAACTCAAGTTTGATGAACGAAGACAAACGTTGCAGGCCTATTCTCTTCCACACTGCTGGTCCAAATGCTGGTGATCAGGAACCATTTCCAATGGGTTCAAACATCCGGTCAAGACCAGGCAAGCATCGAACAAATAGCATCGAGAACTACACCAACTTTAGCAGTAGCTCTGATAACCGAGACGAACCTGCAAATGGGAACGACTCCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0008150 GO:0010564 GO:0010638 GO:0033043 GO:0040008 GO:0040020 GO:0045787 GO:0045836 GO:0045927 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051445 GO:0051446 GO:0051726 GO:0051783 GO:0051785 GO:0065007 GO:0090068 GO:0097159 GO:1901363 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 RRM_2

Protein Analysis

907

Amino Acids

99.89

Weight (kDa)

6.44

Isoelectric Point (pI)

55.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	213 - 277	1.3e-08	RNA recognition motif
RRM_1	PF00076	297 - 362	6.7e-10	RNA recognition motif
RRM_2	PF04059	741 - 837	9.1e-55	RNA recognition motif 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07290 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960
fragaria_vesca	FvH4_5g09460
malus_domestica	MD06G1131000.v1.1 MD14G1147600.v1.1
prunus_persica	Prupe.5G142200_v2.0.a1 Prupe.5G142200_v2.0.a1 Prupe.5G142200_v2.0.a1 Prupe.5G142200_v2.0.a1 Prupe.5G142200_v2.0.a1
pyrus_communis	pycom06g12260 pycom14g12230
rosa_chinensis	RchiOBHm_Chr7g0188731
rosa_laevigata	RLG00000004666
rosa_multiflora	Rmu_sc0003854.1_g000006
rosa_roxburghii	Rroxscaffold_3G00266090
rosa_rugosa	Rorug06G0493200.1 Rorug06G0493300.1 Rorug06G0493400 Rorug06G0493400 Rorug06G0493500
rosa_samantha	Rh7AG098000 Rh7BG099400 Rh7CG101200 Rh7DG099800
rosa_wichuraiana	Rw7G008440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2406
Acc36I	ACCTGC	1 cut(s)	2707
AccB7I	CCANNNNNTGG	1 cut(s)	2579
AccI	GTMKAC	2 cut(s)	1156, 2258
AccII	CGCG	3 cut(s)	354, 1716, 2041
AciI	CCGC	3 cut(s)	352, 788, 1476
AclI	AACGTT	2 cut(s)	2228, 2539
AclWI	GGATC	7 cut(s)	1252, 1411, 1424, 1612, 1617, 1630, 1828
AcoI	YGGCCR	2 cut(s)	1121, 1525
AcsI	RAATTY	1 cut(s)	621
AcuI	CTGAAG	5 cut(s)	135, 351, 1119, 1361, 1875
AfaI	GTAC	2 cut(s)	1111, 2294
AfiI	CCNNNNNNNGG	3 cut(s)	119, 2579, 2705
AflII	CTTAAG	1 cut(s)	814
AhdI	GACNNNNNGTC	1 cut(s)	1064
AhlI	ACTAGT	1 cut(s)	149
AjnI	CCWGG	3 cut(s)	1210, 1930, 2626
Alw21I	GWGCWC	2 cut(s)	799, 1809
Alw26I	GTCTC	5 cut(s)	471, 1195, 1316, 1944, 2685
Alw44I	GTGCAC	1 cut(s)	1805
AlwI	GGATC	7 cut(s)	1252, 1411, 1424, 1612, 1617, 1630, 1828
AoxI	GGCC	5 cut(s)	1121, 1525, 1697, 2007, 2546
ApaLI	GTGCAC	1 cut(s)	1805
ApeKI	GCWGC	5 cut(s)	582, 660, 776, 1078, 2279
ApoI	RAATTY	1 cut(s)	621
ArsI	GACNNNNNNTTYG	2 cut(s)	2603, 2635
Asp700I	GAANNNNTTC	4 cut(s)	60, 930, 1289, 2595
AspLEI	GCGC	3 cut(s)	208, 394, 1740
AspS9I	GGNCC	2 cut(s)	685, 2570
AsuC2I	CCSGG	2 cut(s)	1829, 1914
AsuHPI	GGTGA	9 cut(s)	461, 1157, 1269, 1698, 1795, 1833, 2045, 2126, 2594
AsuII	TTCGAA	2 cut(s)	1024, 1406
AsuNHI	GCTAGC	1 cut(s)	1358
AvaII	GGWCC	2 cut(s)	685, 2570
BaeGI	GKGCMC	1 cut(s)	1809
BalI	TGGCCA	2 cut(s)	1123, 1527
BamHI	GGATCC	2 cut(s)	1416, 1622
BanII	GRGCYC	2 cut(s)	718, 2075
BarI	GAAGNNNNNNTAC	2 cut(s)	223, 255
BauI	CACGAG	1 cut(s)	468
BbsI	GAAGAC	5 cut(s)	63, 1367, 1864, 2220, 2538
Bbv12I	GWGCWC	2 cut(s)	799, 1809
BbvI	GCAGC	5 cut(s)	594, 672, 763, 1090, 2266
BceAI	ACGGC	1 cut(s)	1738
BcgI	CGANNNNNNTGC	2 cut(s)	13, 47
BciT130I	CCWGG	3 cut(s)	1212, 1932, 2628
BclI	TGATCA	1 cut(s)	2584
BcnI	CCSGG	2 cut(s)	1829, 1914
BcoDI	GTCTC	5 cut(s)	471, 1195, 1316, 1944, 2685
BcuI	ACTAGT	1 cut(s)	149
BfaI	CTAG	6 cut(s)	150, 533, 1359, 1764, 2157, 2276
BfoI	RGCGCY	1 cut(s)	209
BfrI	CTTAAG	1 cut(s)	814
BfuAI	ACCTGC	1 cut(s)	2707
BisI	GCNGC	6 cut(s)	583, 661, 777, 789, 1079, 2280
BlpI	GCTNAGC	1 cut(s)	603
BlsI	GCNGC	6 cut(s)	584, 662, 778, 790, 1080, 2281
BmcAI	AGTACT	1 cut(s)	2294
Bme1390I	CCNGG	5 cut(s)	1212, 1829, 1914, 1932, 2628
Bme18I	GGWCC	2 cut(s)	685, 2570
BmeRI	GACNNNNNGTC	1 cut(s)	1064
BmgT120I	GGNCC	2 cut(s)	685, 2570
BmiI	GGNNCC	7 cut(s)	21, 686, 886, 1418, 1624, 2072, 2592
BmrFI	CCNGG	5 cut(s)	1212, 1829, 1914, 1932, 2628
BmrI	ACTGGG	1 cut(s)	265
BmtI	GCTAGC	1 cut(s)	1362
BmuI	ACTGGG	1 cut(s)	265
BpiI	GAAGAC	5 cut(s)	63, 1367, 1864, 2220, 2538
BpmI	CTGGAG	2 cut(s)	859, 1866
Bpu1102I	GCTNAGC	1 cut(s)	603
Bpu14I	TTCGAA	2 cut(s)	1024, 1406
BpuEI	CTTGAG	4 cut(s)	259, 597, 1082, 2500
BpuMI	CCSGG	2 cut(s)	1829, 1914
BsaAI	YACGTR	1 cut(s)	2207
BsaBI	GATNNNNATC	1 cut(s)	2193
BsaJI	CCNNGG	3 cut(s)	802, 1210, 1827
BsaWI	WCCGGW	1 cut(s)	2616
BsaXI	ACNNNNNCTCC	2 cut(s)	1560, 1590
Bsc4I	CCNNNNNNNGG	3 cut(s)	119, 2579, 2705
Bse1I	ACTGG	2 cut(s)	260, 2068
Bse3DI	GCAATG	3 cut(s)	592, 1564, 2356
Bse8I	GATNNNNATC	1 cut(s)	2193
BseBI	CCWGG	3 cut(s)	1212, 1932, 2628
BseDI	CCNNGG	3 cut(s)	802, 1210, 1827
BseGI	GGATG	7 cut(s)	430, 499, 607, 1438, 1740, 1948, 2613
BseJI	GATNNNNATC	1 cut(s)	2193
BseLI	CCNNNNNNNGG	3 cut(s)	119, 2579, 2705
BseMI	GCAATG	3 cut(s)	592, 1564, 2356
BseMII	CTCAG	5 cut(s)	66, 594, 794, 1368, 1748
BseNI	ACTGG	2 cut(s)	260, 2068
BseRI	GAGGAG	1 cut(s)	541
BseSI	GKGCMC	1 cut(s)	1809
BseXI	GCAGC	5 cut(s)	594, 672, 763, 1090, 2266
BseYI	CCCAGC	2 cut(s)	679, 1070
Bsh1236I	CGCG	3 cut(s)	354, 1716, 2041
BshFI	GGCC	5 cut(s)	1123, 1527, 1699, 2009, 2548
BsiHKAI	GWGCWC	2 cut(s)	799, 1809
BsiSI	CCGG	3 cut(s)	1829, 1914, 2617
BslI	CCNNNNNNNGG	3 cut(s)	119, 2579, 2705
BsmAI	GTCTC	5 cut(s)	471, 1195, 1316, 1944, 2685
BsmBI	CGTCTC	2 cut(s)	1944, 2685
BsmI	GAATGC	2 cut(s)	1757, 2411
BsnI	GGCC	5 cut(s)	1123, 1527, 1699, 2009, 2548
Bsp119I	TTCGAA	2 cut(s)	1024, 1406
Bsp1286I	GDGCHC	4 cut(s)	718, 799, 1809, 2075
Bsp143I	GATC	9 cut(s)	427, 1244, 1416, 1604, 1622, 1820, 2033, 2194, 2584
Bsp1720I	GCTNAGC	1 cut(s)	603
Bsp68I	TCGCGA	1 cut(s)	2041
BspACI	CCGC	3 cut(s)	352, 788, 1476
BspANI	GGCC	5 cut(s)	1123, 1527, 1699, 2009, 2548
BspCNI	CTCAG	5 cut(s)	67, 595, 793, 1367, 1747
BspFNI	CGCG	3 cut(s)	354, 1716, 2041
BspHI	TCATGA	2 cut(s)	52, 93
BspLI	GGNNCC	7 cut(s)	21, 686, 886, 1418, 1624, 2072, 2592
BspMI	ACCTGC	1 cut(s)	2707
BspOI	GCTAGC	1 cut(s)	1362
BspPI	GGATC	7 cut(s)	1252, 1411, 1424, 1612, 1617, 1630, 1828
BspQI	GCTCTTC	2 cut(s)	723, 921
BspT104I	TTCGAA	2 cut(s)	1024, 1406
BspTI	CTTAAG	1 cut(s)	814
BsrDI	GCAATG	3 cut(s)	592, 1564, 2356
BsrI	ACTGG	2 cut(s)	260, 2068
BssECI	CCNNGG	3 cut(s)	802, 1210, 1827
BssMI	GATC	9 cut(s)	427, 1244, 1416, 1604, 1622, 1820, 2033, 2194, 2584
BssNAI	GTATAC	1 cut(s)	2259
BssSI	CACGAG	1 cut(s)	468
Bst1107I	GTATAC	1 cut(s)	2259
Bst2BI	CACGAG	1 cut(s)	468
Bst2UI	CCWGG	3 cut(s)	1212, 1932, 2628
Bst6I	CTCTTC	3 cut(s)	723, 921, 2561
BstAFI	CTTAAG	1 cut(s)	814
BstAPI	GCANNNNNTGC	2 cut(s)	1037, 2462
BstBAI	YACGTR	1 cut(s)	2207
BstBI	TTCGAA	2 cut(s)	1024, 1406
BstC8I	GCNNGC	8 cut(s)	677, 730, 1360, 1364, 1474, 2463, 2546, 2633
BstDEI	CTNAG	8 cut(s)	75, 376, 603, 780, 1354, 1734, 1903, 2265
BstDSI	CCRYGG	1 cut(s)	802
BstEII	GGTNACC	2 cut(s)	1275, 1634
BstF5I	GGATG	7 cut(s)	430, 499, 607, 1438, 1740, 1948, 2613
BstFNI	CGCG	3 cut(s)	354, 1716, 2041
BstH2I	RGCGCY	1 cut(s)	209
BstHHI	GCGC	3 cut(s)	208, 394, 1740
BstKTI	GATC	9 cut(s)	430, 1247, 1419, 1607, 1625, 1823, 2036, 2197, 2587
BstMAI	GTCTC	5 cut(s)	471, 1195, 1316, 1944, 2685
BstMBI	GATC	9 cut(s)	427, 1244, 1416, 1604, 1622, 1820, 2033, 2194, 2584
BstMWI	GCNNNNNNNGC	9 cut(s)	579, 785, 794, 1037, 1722, 1871, 2047, 2462, 2498
BstNI	CCWGG	3 cut(s)	1212, 1932, 2628
BstPI	GGTNACC	2 cut(s)	1275, 1634
BstSCI	CCNGG	5 cut(s)	1210, 1827, 1912, 1930, 2626
BstSLI	GKGCMC	1 cut(s)	1809
BstUI	CGCG	3 cut(s)	354, 1716, 2041
BstV1I	GCAGC	5 cut(s)	594, 672, 763, 1090, 2266
BstV2I	GAAGAC	5 cut(s)	63, 1367, 1864, 2220, 2538
BstX2I	RGATCY	5 cut(s)	1244, 1416, 1604, 1622, 1820
BstXI	CCANNNNNNTGG	2 cut(s)	1817, 2567
BstYI	RGATCY	5 cut(s)	1244, 1416, 1604, 1622, 1820
BstZ17I	GTATAC	1 cut(s)	2259
BsuRI	GGCC	5 cut(s)	1123, 1527, 1699, 2009, 2548
BtgI	CCRYGG	1 cut(s)	802
BtgZI	GCGATG	4 cut(s)	1536, 1782, 2022, 2442
BtsCI	GGATG	7 cut(s)	430, 499, 607, 1438, 1740, 1948, 2613
BtsI	GCAGTG	2 cut(s)	520, 2562
BtsIMutI	CAGTG	4 cut(s)	253, 520, 2091, 2562
BtuMI	TCGCGA	1 cut(s)	2041
BveI	ACCTGC	1 cut(s)	2707
Cac8I	GCNNGC	8 cut(s)	677, 730, 1360, 1364, 1474, 2463, 2546, 2633
CciI	TCATGA	2 cut(s)	52, 93
CfoI	GCGC	3 cut(s)	208, 394, 1740
Cfr13I	GGNCC	2 cut(s)	685, 2570
CseI	GACGC	1 cut(s)	1705
Csp6I	GTAC	2 cut(s)	1110, 2293
CspCI	CAANNNNNGTGG	4 cut(s)	721, 756, 1546, 1581
CviQI	GTAC	2 cut(s)	1110, 2293
DdeI	CTNAG	8 cut(s)	75, 376, 603, 780, 1354, 1734, 1903, 2265
DpnI	GATC	9 cut(s)	429, 1246, 1418, 1606, 1624, 1822, 2035, 2196, 2586
DpnII	GATC	9 cut(s)	427, 1244, 1416, 1604, 1622, 1820, 2033, 2194, 2584
DriI	GACNNNNNGTC	1 cut(s)	1064
EaeI	YGGCCR	2 cut(s)	1121, 1525
Eam1104I	CTCTTC	3 cut(s)	723, 921, 2561
Eam1105I	GACNNNNNGTC	1 cut(s)	1064
EarI	CTCTTC	3 cut(s)	723, 921, 2561
Eco147I	AGGCCT	1 cut(s)	2548
Eco24I	GRGCYC	2 cut(s)	718, 2075
Eco47I	GGWCC	2 cut(s)	685, 2570
Eco57I	CTGAAG	5 cut(s)	135, 351, 1119, 1361, 1875
Eco91I	GGTNACC	2 cut(s)	1275, 1634
EcoO109I	RGGNCCY	1 cut(s)	685
EcoO65I	GGTNACC	2 cut(s)	1275, 1634
EcoRII	CCWGG	3 cut(s)	1210, 1930, 2626
EcoT22I	ATGCAT	1 cut(s)	987
EcoT38I	GRGCYC	2 cut(s)	718, 2075
Esp3I	CGTCTC	2 cut(s)	1944, 2685
FalI	AAGNNNNNCTT	2 cut(s)	320, 352
FauNDI	CATATG	4 cut(s)	952, 1867, 2308, 2467
FbaI	TGATCA	1 cut(s)	2584
FblI	GTMKAC	2 cut(s)	1156, 2258
Fnu4HI	GCNGC	6 cut(s)	583, 661, 777, 789, 1079, 2280
FokI	GGATG	7 cut(s)	437, 506, 594, 1425, 1727, 1935, 2600
FriOI	GRGCYC	2 cut(s)	718, 2075
Fsp4HI	GCNGC	6 cut(s)	583, 661, 777, 789, 1079, 2280
FspBI	CTAG	6 cut(s)	150, 533, 1359, 1764, 2157, 2276
GlaI	GCGC	3 cut(s)	207, 393, 1739
GluI	GCNGC	6 cut(s)	583, 661, 777, 789, 1079, 2280
GsaI	CCCAGC	2 cut(s)	683, 1074
GsuI	CTGGAG	2 cut(s)	859, 1866
HaeII	RGCGCY	1 cut(s)	209
HaeIII	GGCC	5 cut(s)	1123, 1527, 1699, 2009, 2548
HapII	CCGG	3 cut(s)	1829, 1914, 2617
HgaI	GACGC	1 cut(s)	1705
HhaI	GCGC	3 cut(s)	208, 394, 1740
Hin6I	GCGC	3 cut(s)	206, 392, 1738
HinP1I	GCGC	3 cut(s)	206, 392, 1738
HincII	GTYRAC	1 cut(s)	1720
HindII	GTYRAC	1 cut(s)	1720
HindIII	AAGCTT	2 cut(s)	193, 827
HpaII	CCGG	3 cut(s)	1829, 1914, 2617
HphI	GGTGA	9 cut(s)	461, 1157, 1269, 1698, 1795, 1833, 2045, 2126, 2594
Hpy166II	GTNNAC	6 cut(s)	1003, 1157, 1720, 1786, 1807, 2259
Hpy8I	GTNNAC	6 cut(s)	1003, 1157, 1720, 1786, 1807, 2259
HpyAV	CCTTC	8 cut(s)	51, 110, 375, 816, 875, 1300, 2061, 2443
HpyCH4IV	ACGT	4 cut(s)	1300, 2206, 2228, 2539
HpyF10VI	GCNNNNNNNGC	9 cut(s)	579, 785, 794, 1037, 1722, 1871, 2047, 2462, 2498
HpyF3I	CTNAG	8 cut(s)	75, 376, 603, 780, 1354, 1734, 1903, 2265
HpySE526I	ACGT	4 cut(s)	1300, 2206, 2228, 2539
HspAI	GCGC	3 cut(s)	206, 392, 1738
Ksp22I	TGATCA	1 cut(s)	2584
Kzo9I	GATC	9 cut(s)	427, 1244, 1416, 1604, 1622, 1820, 2033, 2194, 2584
LguI	GCTCTTC	2 cut(s)	723, 921
LmnI	GCTCC	3 cut(s)	884, 2070, 2277
Lsp1109I	GCAGC	5 cut(s)	594, 672, 763, 1090, 2266
MaeI	CTAG	6 cut(s)	150, 533, 1359, 1764, 2157, 2276
MaeII	ACGT	4 cut(s)	1300, 2206, 2228, 2539
MaeIII	GTNAC	6 cut(s)	170, 500, 1275, 1634, 1652, 1750
MalI	GATC	9 cut(s)	429, 1246, 1418, 1606, 1624, 1822, 2035, 2196, 2586
MboI	GATC	9 cut(s)	427, 1244, 1416, 1604, 1622, 1820, 2033, 2194, 2584
MfeI	CAATTG	1 cut(s)	2328
MflI	RGATCY	5 cut(s)	1244, 1416, 1604, 1622, 1820
MhlI	GDGCHC	4 cut(s)	718, 799, 1809, 2075
MlsI	TGGCCA	2 cut(s)	1123, 1527
MluCI	AATT	9 cut(s)	83, 305, 621, 698, 960, 1264, 1402, 2011, 2328
MluNI	TGGCCA	2 cut(s)	1123, 1527
MlyI	GAGTC	4 cut(s)	380, 1318, 1356, 2708
MmeI	TCCRAC	2 cut(s)	2335, 2453
Mox20I	TGGCCA	2 cut(s)	1123, 1527
Mph1103I	ATGCAT	1 cut(s)	987
MroXI	GAANNNNTTC	4 cut(s)	60, 930, 1289, 2595
MscI	TGGCCA	2 cut(s)	1123, 1527
MseI	TTAA	7 cut(s)	693, 815, 1083, 1173, 1587, 1778, 1835
MslI	CAYNNNNRTG	2 cut(s)	51, 1989
Msp20I	TGGCCA	2 cut(s)	1123, 1527
MspA1I	CMGCKG	1 cut(s)	728
MspCI	CTTAAG	1 cut(s)	814
MspI	CCGG	3 cut(s)	1829, 1914, 2617
MspR9I	CCNGG	5 cut(s)	1212, 1829, 1914, 1932, 2628
MunI	CAATTG	1 cut(s)	2328
Mva1269I	GAATGC	2 cut(s)	1757, 2411
MvaI	CCWGG	3 cut(s)	1212, 1932, 2628
MvnI	CGCG	3 cut(s)	354, 1716, 2041
MwoI	GCNNNNNNNGC	9 cut(s)	579, 785, 794, 1037, 1722, 1871, 2047, 2462, 2498
NciI	CCSGG	2 cut(s)	1829, 1914
NdeI	CATATG	4 cut(s)	952, 1867, 2308, 2467
NdeII	GATC	9 cut(s)	427, 1244, 1416, 1604, 1622, 1820, 2033, 2194, 2584
NheI	GCTAGC	1 cut(s)	1358
NlaIV	GGNNCC	7 cut(s)	21, 686, 886, 1418, 1624, 2072, 2592
NmuCI	GTSAC	2 cut(s)	500, 1275
NruI	TCGCGA	1 cut(s)	2041
NsiI	ATGCAT	1 cut(s)	987
NspV	TTCGAA	2 cut(s)	1024, 1406
PagI	TCATGA	2 cut(s)	52, 93
PceI	AGGCCT	1 cut(s)	2548
PciSI	GCTCTTC	2 cut(s)	723, 921
PcsI	WCGNNNNNNNCGW	2 cut(s)	2038, 2203
PctI	GAATGC	2 cut(s)	1757, 2411
PdmI	GAANNNNTTC	4 cut(s)	60, 930, 1289, 2595
PfeI	GAWTC	8 cut(s)	736, 908, 1877, 1886, 1996, 2125, 2147, 2476
PflMI	CCANNNNNTGG	1 cut(s)	2579
PkrI	GCNGC	6 cut(s)	584, 662, 778, 790, 1080, 2281
PleI	GAGTC	4 cut(s)	379, 1317, 1355, 2708
PpsI	GAGTC	4 cut(s)	379, 1317, 1355, 2708
Ppu21I	YACGTR	1 cut(s)	2207
PpuMI	RGGWCCY	1 cut(s)	685
PsiI	TTATAA	1 cut(s)	2406
Psp1406I	AACGTT	2 cut(s)	2228, 2539
Psp5II	RGGWCCY	1 cut(s)	685
Psp6I	CCWGG	3 cut(s)	1210, 1930, 2626
PspEI	GGTNACC	2 cut(s)	1275, 1634
PspFI	CCCAGC	2 cut(s)	679, 1070
PspGI	CCWGG	3 cut(s)	1210, 1930, 2626
PspN4I	GGNNCC	7 cut(s)	21, 686, 886, 1418, 1624, 2072, 2592
PspPI	GGNCC	2 cut(s)	685, 2570
PspPPI	RGGWCCY	1 cut(s)	685
PsrI	GAACNNNNNNTAC	2 cut(s)	931, 963
PsuI	RGATCY	5 cut(s)	1244, 1416, 1604, 1622, 1820
PvuII	CAGCTG	1 cut(s)	728
RruI	TCGCGA	1 cut(s)	2041
RsaI	GTAC	2 cut(s)	1111, 2294
RsaNI	GTAC	2 cut(s)	1110, 2293
RseI	CAYNNNNRTG	2 cut(s)	51, 1989
SapI	GCTCTTC	2 cut(s)	723, 921
SaqAI	TTAA	7 cut(s)	693, 815, 1083, 1173, 1587, 1778, 1835
SatI	GCNGC	6 cut(s)	583, 661, 777, 789, 1079, 2280
Sau3AI	GATC	9 cut(s)	427, 1244, 1416, 1604, 1622, 1820, 2033, 2194, 2584
Sau96I	GGNCC	2 cut(s)	685, 2570
ScaI	AGTACT	1 cut(s)	2294
SchI	GAGTC	4 cut(s)	380, 1318, 1356, 2708
ScrFI	CCNGG	5 cut(s)	1212, 1829, 1914, 1932, 2628
SduI	GDGCHC	4 cut(s)	718, 799, 1809, 2075
SfuI	TTCGAA	2 cut(s)	1024, 1406
SinI	GGWCC	2 cut(s)	685, 2570
SmiMI	CAYNNNNRTG	2 cut(s)	51, 1989
SmlI	CTYRAG	5 cut(s)	274, 612, 814, 1061, 2515
SmoI	CTYRAG	5 cut(s)	274, 612, 814, 1061, 2515
SpeI	ACTAGT	1 cut(s)	149
Sse9I	AATT	9 cut(s)	83, 305, 621, 698, 960, 1264, 1402, 2011, 2328
SseBI	AGGCCT	1 cut(s)	2548
SsiI	CCGC	3 cut(s)	352, 788, 1476
SspI	AATATT	2 cut(s)	1218, 2392
SspMI	CTAG	6 cut(s)	150, 533, 1359, 1764, 2157, 2276
StuI	AGGCCT	1 cut(s)	2548
StyD4I	CCNGG	5 cut(s)	1210, 1827, 1912, 1930, 2626
TaiI	ACGT	4 cut(s)	1303, 2209, 2231, 2542
TaqI	TCGA	8 cut(s)	593, 1024, 1252, 1314, 1406, 2379, 2638, 2652
TasI	AATT	9 cut(s)	83, 305, 621, 698, 960, 1264, 1402, 2011, 2328
TatI	WGTACW	1 cut(s)	2292
TauI	GCSGC	1 cut(s)	791
TfiI	GAWTC	8 cut(s)	736, 908, 1877, 1886, 1996, 2125, 2147, 2476
Tru1I	TTAA	7 cut(s)	693, 815, 1083, 1173, 1587, 1778, 1835
Tru9I	TTAA	7 cut(s)	693, 815, 1083, 1173, 1587, 1778, 1835
TscAI	CASTG	4 cut(s)	260, 520, 2091, 2569
TseFI	GTSAC	2 cut(s)	500, 1275
TseI	GCWGC	5 cut(s)	582, 660, 776, 1078, 2279
Tsp45I	GTSAC	2 cut(s)	500, 1275
TspGWI	ACGGA	1 cut(s)	2388
TspRI	CASTG	4 cut(s)	260, 520, 2091, 2569
Van91I	CCANNNNNTGG	1 cut(s)	2579
Vha464I	CTTAAG	1 cut(s)	814
VneI	GTGCAC	1 cut(s)	1805
VpaK11BI	GGWCC	2 cut(s)	685, 2570
XapI	RAATTY	1 cut(s)	621
XbaI	TCTAGA	1 cut(s)	1763
XmiI	GTMKAC	2 cut(s)	1156, 2258
XmnI	GAANNNNTTC	4 cut(s)	60, 930, 1289, 2595
XspI	CTAG	6 cut(s)	150, 533, 1359, 1764, 2157, 2276
ZrmI	AGTACT	1 cut(s)	2294
Zsp2I	ATGCAT	1 cut(s)	987

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.