Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003328

Physical Location & Seq

Genomic Coordinates Forward (+)

61071361 .. 61076698

Gene Structure 5338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0493500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2061 bp

ATGGCCGACGAAGCACAATACTCCTCCGGGCCCGATTCCGGCAGCAATAAGCGAAAATATGAGGAGCCTACTACCCGCAGGGTCACCGGCTTCTCAGCCCCCATCATCGCCTCCTCATCGCCCGACTCTGTCCCCACGTCCTACAGCAGCGTTCCTCCGCCCGTCGACGACATCCAGCTCGCCAAGCAGCGCGCTCAGGAGATTGCTGCTCGATTGTTCAACAACGCCAGTAGCGGCGTTGCTGCCGGCGGCGGCGGCCTGGAATCTAAGCGCCCTAGAGTTGATAATGGCGGTGGCTTCGATTCCGGTGACAAGGGCTTCAGCTCTATTCCCTCTGATGCCAAGCCTTACTCAGCTCCATCGTCGATCCCAGTTTCGTATGGGTTCCAAGGAGGGAGCAAAAAGATTGATGTTCCAAATGGCAGGGTTGGTGTTATTATTGGTAAACTGGGTGAGACTATTAAGTATCTTCAGGCTCAGTCTGGAGGAGCCAAGATTCAAGTTACCCGAGATGCAGATGCCGACCTTAATTGCCCAACTAGGGAGGTGGAGATCATGGGAACTCCAGAACAAATTGCAAAAGCTGAGCGTTTGATAAATGAAGTTCTTGCTGAGGCTGAATCAGGCGGTCCTGCCATAGTTTCTCGAAGGTTAACTGGACAAGCTGGAGCTGAAACATTTGTAATGAAAATTCCTAACAACAAGGTTGGTCTTGTAATTGGTAAACGAGGGGAAACTATTAAAAATATGCAAGCTAGTACTGCTGCTCGTATACAGGTGATTCCTTTGCATCTTCCCCCCGGTGATACCTCATCCGAAAGGACAGTACAGATTGATGGAACTAGTGAACAAATTGAAGCTGCCAAACAGTTGGTTAATGAAGTTATTAGTGAGAACCGTGTTAGAAATCCAGCAATGGCTGGAGGATATTCACAGCAGGGTTATCAAGCACGTCCTCCCACTGGCTGGGCTCCTAGTGGTCCTCCAATGCAACAACCAGGTTATGGATATGGACAGTCCGGAGCATATTCTGGCACAACACCTCAGTATAATGCATCTCAGCCTTCTTATCCCGGTTATCCTCCTCAACCGGCATCTGGTGGATATCCCACCAATTGGGATCAGTCAGCTGTTGCACCAACTCAGCAGACCTCCCAGGCAGGTGGTTATGATTACTATTCCCAACAACCCTCACACCAACAGCAAAACCCTGGTGGTCCTGCTGCACCAGCGGATAATGCTAGTTACAATTATGGCCAGCCGCCTATTTCAGGCTATAATCAGCAAGGACAAGGTTATCCTCAAGATGGCTATGGTGGATATCAGGCACCACCTCAATCTGGGTATGGCCAGCCACCTGCATACGATCAACATGGTTATCCTGCAGCCAACTATGGTAATGTGAGCAACCCAGCTCCAGATACCCATACTTCCTCTTATGGATCTCAGGGGGAATCAGCCCAAGCACCTCCTGTGCAGCCTGCTCCAGGGGGCCAGCAAGCATACAGTGCCACTCAACAGCCTAGCCCGAACCCCGCAAGTTATCCGCCCCAAGTGTCTACTCAGCCAGGTTATGGAATGCCCCCAACTTCTCAAACTGGTTATGGGACTCAACCACCTGCTCAATCTGCATATGGACCTGGATATGGAGCACCTCAAGCGCAAAAGCCTCCTGCTCAGTCACCCACTACTCCTGGAGGATATGGTCAACCACCAGCTGTGCATCCAGGCTATCCCCATTCTCAGCCTCCACCTTCTGGATATGCTCAGCCTGATTCTGGTGCACGTGCTCCACCATCCAGTTATGGTTCTACAGCGGCTCAGGCAGGCTATGGTCCCCCATCTTATGGTGCACCGCCATCTGGTCAGCCAGGTTATGGGCAGGTGCCACCCTACAATACATCTTATGGTGCTGCAGGATACACACAGCCTCCTCCTGCATATTCTGCTGAAGGAGCGAATGGAAACACTCGAGGTGCATATGATGGTGCTGGTGCTGGTGCTCCTGCTTCACAGACTGCTCAGCAAAGTGGAGTCGCCAAAACTTCCCCACAGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0008150 GO:0010564 GO:0010638 GO:0033043 GO:0040008 GO:0040020 GO:0045787 GO:0045836 GO:0045927 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051445 GO:0051446 GO:0051726 GO:0051783 GO:0051785 GO:0065007 GO:0090068 GO:0097159 GO:1901363 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 RRM_2

Protein Analysis

686

Amino Acids

70.5

Weight (kDa)

5.78

Isoelectric Point (pI)

54.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	134 - 201	2.4e-17	KH domain
KH_1	PF00013	226 - 294	1.3e-18	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07290 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960
fragaria_vesca	FvH4_5g09460
malus_domestica	MD06G1131000.v1.1 MD14G1147600.v1.1
prunus_persica	Prupe.5G142200_v2.0.a1 Prupe.5G142200_v2.0.a1 Prupe.5G142200_v2.0.a1 Prupe.5G142200_v2.0.a1 Prupe.5G142200_v2.0.a1
pyrus_communis	pycom06g12260 pycom14g12230
rosa_chinensis	RchiOBHm_Chr7g0188731
rosa_laevigata	RLG00000004666
rosa_multiflora	Rmu_sc0003854.1_g000006
rosa_roxburghii	Rroxscaffold_3G00266090
rosa_rugosa	Rorug06G0493200.1 Rorug06G0493300.1 Rorug06G0493400 Rorug06G0493400 Rorug06G0493500
rosa_samantha	Rh7AG098000 Rh7BG099400 Rh7CG101200 Rh7DG099800
rosa_wichuraiana	Rw7G008440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	4 cut(s)	1151, 1366, 1627, 1873
Acc36I	ACCTGC	4 cut(s)	1151, 1366, 1627, 1873
AccB1I	GGYRCC	2 cut(s)	1327, 1885
AccB7I	CCANNNNNTGG	7 cut(s)	966, 1004, 1116, 1574, 1757, 1847, 1877
AccI	GTMKAC	3 cut(s)	165, 772, 1559
AccII	CGCG	1 cut(s)	192
AccIII	TCCGGA	1 cut(s)	1019
AclWI	GGATC	3 cut(s)	361, 1128, 1450
AcoI	YGGCCR	3 cut(s)	3, 1255, 1348
AcsI	RAATTY	1 cut(s)	690
AcuI	CTGAAG	3 cut(s)	304, 455, 1971
AcvI	CACGTG	1 cut(s)	1787
AfaI	GTAC	2 cut(s)	760, 828
AgsI	TTSAA	3 cut(s)	220, 500, 857
AhlI	ACTAGT	1 cut(s)	842
AjiI	CACGTC	2 cut(s)	138, 953
Alw21I	GWGCWC	5 cut(s)	1654, 1786, 1792, 1855, 2005
Alw26I	GTCTC	1 cut(s)	449
Alw44I	GTGCAC	2 cut(s)	1782, 1851
AlwI	GGATC	3 cut(s)	361, 1128, 1450
Ama87I	CYCGRG	2 cut(s)	507, 1971
Aor13HI	TCCGGA	1 cut(s)	1019
AoxI	GGCC	6 cut(s)	3, 29, 256, 1255, 1348, 1492
ApaI	GGGCCC	1 cut(s)	33
ApaLI	GTGCAC	2 cut(s)	1782, 1851
ApoI	RAATTY	1 cut(s)	690
AspLEI	GCGC	4 cut(s)	192, 194, 273, 1663
AspS9I	GGNCC	8 cut(s)	29, 30, 629, 980, 1217, 1492, 1637, 1835
AsuC2I	CCSGG	3 cut(s)	28, 801, 1074
AsuHPI	GGTGA	6 cut(s)	76, 320, 464, 790, 815, 1674
AvaI	CYCGRG	2 cut(s)	507, 1971
AvaII	GGWCC	5 cut(s)	629, 980, 1217, 1637, 1835
BaeGI	GKGCMC	3 cut(s)	33, 1786, 1855
BalI	TGGCCA	2 cut(s)	1257, 1350
BanI	GGYRCC	2 cut(s)	1327, 1885
BanII	GRGCYC	2 cut(s)	33, 973
BbrPI	CACGTG	1 cut(s)	1787
Bbv12I	GWGCWC	5 cut(s)	1654, 1786, 1792, 1855, 2005
BbvCI	CCTCAGC	1 cut(s)	612
BccI	CCATC	8 cut(s)	110, 367, 830, 1301, 1804, 1849, 1867, 1979
BciVI	GTATCC	1 cut(s)	1913
BcnI	CCSGG	3 cut(s)	28, 801, 1074
BcoDI	GTCTC	1 cut(s)	449
BcuI	ACTAGT	1 cut(s)	842
BfaI	CTAG	7 cut(s)	276, 540, 756, 843, 975, 1242, 1524
BfmI	CTRYAG	4 cut(s)	142, 1383, 1812, 1914
BfoI	RGCGCY	1 cut(s)	274
BfuAI	ACCTGC	4 cut(s)	1151, 1366, 1627, 1873
BfuI	GTATCC	1 cut(s)	1913
BlpI	GCTNAGC	3 cut(s)	585, 1767, 2022
BmcAI	AGTACT	1 cut(s)	760
Bme18I	GGWCC	5 cut(s)	629, 980, 1217, 1637, 1835
BmeT110I	CYCGRG	2 cut(s)	507, 1971
BmgBI	CACGTC	2 cut(s)	138, 953
BmgT120I	GGNCC	8 cut(s)	29, 30, 629, 980, 1217, 1492, 1637, 1835
BmiI	GGNNCC	9 cut(s)	31, 66, 386, 490, 972, 1329, 1493, 1837, 1887
BmrI	ACTGGG	2 cut(s)	365, 458
BmsI	GCATC	7 cut(s)	328, 502, 508, 799, 1064, 1103, 1732
BmuI	ACTGGG	2 cut(s)	365, 458
BpmI	CTGGAG	7 cut(s)	504, 549, 687, 942, 1401, 1470, 1716
Bpu10I	CCTNAGC	3 cut(s)	195, 612, 1821
Bpu1102I	GCTNAGC	3 cut(s)	585, 1767, 2022
BpuEI	CTTGAG	2 cut(s)	1287, 1641
BpuMI	CCSGG	3 cut(s)	28, 801, 1074
BsaAI	YACGTR	1 cut(s)	1787
BsaJI	CCNNGG	5 cut(s)	388, 799, 1155, 1210, 1487
BsaWI	WCCGGW	2 cut(s)	305, 1019
BsaXI	ACNNNNNCTCC	2 cut(s)	1915, 1945
Bse118I	RCCGGY	3 cut(s)	86, 245, 1090
Bse1I	ACTGG	7 cut(s)	228, 371, 453, 661, 967, 1603, 1800
Bse3DI	GCAATG	1 cut(s)	921
BseAI	TCCGGA	1 cut(s)	1019
BseDI	CCNNGG	5 cut(s)	388, 799, 1155, 1210, 1487
BseGI	GGATG	4 cut(s)	171, 812, 1723, 1796
BseMI	GCAATG	1 cut(s)	921
BseNI	ACTGG	7 cut(s)	228, 371, 453, 661, 967, 1603, 1800
BsePI	GCGCGC	1 cut(s)	190
BseRI	GAGGAG	6 cut(s)	13, 77, 103, 501, 1074, 1923
BseSI	GKGCMC	3 cut(s)	33, 1786, 1855
BseYI	CCCAGC	2 cut(s)	966, 1411
BsgI	GTGCAG	2 cut(s)	1209, 1496
Bsh1236I	CGCG	1 cut(s)	192
BshFI	GGCC	6 cut(s)	5, 31, 258, 1257, 1350, 1494
BshNI	GGYRCC	2 cut(s)	1327, 1885
BsiHKAI	GWGCWC	5 cut(s)	1654, 1786, 1792, 1855, 2005
BsiHKCI	CYCGRG	2 cut(s)	507, 1971
BsiSI	CCGG	9 cut(s)	27, 39, 87, 246, 306, 801, 1020, 1074, 1091
BslFI	GGGAC	3 cut(s)	116, 1621, 1821
BsmAI	GTCTC	1 cut(s)	449
BsmFI	GGGAC	3 cut(s)	116, 1621, 1821
BsmI	GAATGC	1 cut(s)	1584
BsnI	GGCC	6 cut(s)	5, 31, 258, 1257, 1350, 1494
BsoBI	CYCGRG	2 cut(s)	507, 1971
Bsp120I	GGGCCC	1 cut(s)	29
Bsp1286I	GDGCHC	7 cut(s)	33, 973, 1654, 1786, 1792, 1855, 2005
Bsp13I	TCCGGA	1 cut(s)	1019
Bsp143I	GATC	5 cut(s)	366, 552, 1120, 1366, 1442
Bsp1720I	GCTNAGC	3 cut(s)	585, 1767, 2022
BspANI	GGCC	6 cut(s)	5, 31, 258, 1257, 1350, 1494
BspEI	TCCGGA	1 cut(s)	1019
BspFNI	CGCG	1 cut(s)	192
BspLI	GGNNCC	9 cut(s)	31, 66, 386, 490, 972, 1329, 1493, 1837, 1887
BspMAI	CTGCAG	2 cut(s)	1387, 1918
BspMI	ACCTGC	4 cut(s)	1151, 1366, 1627, 1873
BspPI	GGATC	3 cut(s)	361, 1128, 1450
BspT107I	GGYRCC	2 cut(s)	1327, 1885
BsrDI	GCAATG	1 cut(s)	921
BsrFI	RCCGGY	3 cut(s)	86, 245, 1090
BsrI	ACTGG	7 cut(s)	228, 371, 453, 661, 967, 1603, 1800
BssAI	RCCGGY	3 cut(s)	86, 245, 1090
BssECI	CCNNGG	5 cut(s)	388, 799, 1155, 1210, 1487
BssHII	GCGCGC	1 cut(s)	190
BssMI	GATC	5 cut(s)	366, 552, 1120, 1366, 1442
BssNAI	GTATAC	1 cut(s)	773
BssT1I	CCWWGG	1 cut(s)	388
Bst1107I	GTATAC	1 cut(s)	773
Bst4CI	ACNGT	5 cut(s)	826, 870, 899, 1017, 1508
BstAPI	GCANNNNNTGC	2 cut(s)	1508, 1946
BstBAI	YACGTR	1 cut(s)	1787
BstEII	GGTNACC	1 cut(s)	82
BstENI	CCTNNNNNAGG	2 cut(s)	1269, 1485
BstF5I	GGATG	4 cut(s)	171, 812, 1723, 1796
BstFNI	CGCG	1 cut(s)	192
BstH2I	RGCGCY	1 cut(s)	274
BstHHI	GCGC	4 cut(s)	192, 194, 273, 1663
BstKTI	GATC	5 cut(s)	369, 555, 1123, 1369, 1445
BstMAI	GTCTC	1 cut(s)	449
BstMBI	GATC	5 cut(s)	366, 552, 1120, 1366, 1442
BstPI	GGTNACC	1 cut(s)	82
BstSFI	CTRYAG	4 cut(s)	142, 1383, 1812, 1914
BstSLI	GKGCMC	3 cut(s)	33, 1786, 1855
BstUI	CGCG	1 cut(s)	192
BstX2I	RGATCY	1 cut(s)	1442
BstXI	CCANNNNNNTGG	2 cut(s)	871, 1163
BstYI	RGATCY	1 cut(s)	1442
BstZ17I	GTATAC	1 cut(s)	773
BsuI	GTATCC	1 cut(s)	1913
BsuRI	GGCC	6 cut(s)	5, 31, 258, 1257, 1350, 1494
BtgZI	GCGATG	2 cut(s)	91, 102
BtrI	CACGTC	2 cut(s)	138, 953
BtsCI	GGATG	4 cut(s)	171, 812, 1723, 1796
BtsIMutI	CAGTG	2 cut(s)	960, 1513
BveI	ACCTGC	4 cut(s)	1151, 1366, 1627, 1873
CfoI	GCGC	4 cut(s)	192, 194, 273, 1663
Cfr10I	RCCGGY	3 cut(s)	86, 245, 1090
Cfr13I	GGNCC	8 cut(s)	29, 30, 629, 980, 1217, 1492, 1637, 1835
CsiI	ACCWGGT	1 cut(s)	997
Csp6I	GTAC	2 cut(s)	759, 827
CviAII	CATG	2 cut(s)	556, 1373
CviQI	GTAC	2 cut(s)	759, 827
DpnI	GATC	5 cut(s)	368, 554, 1122, 1368, 1444
DpnII	GATC	5 cut(s)	366, 552, 1120, 1366, 1442
EaeI	YGGCCR	3 cut(s)	3, 1255, 1348
EciI	GGCGGA	2 cut(s)	147, 1536
Eco130I	CCWWGG	1 cut(s)	388
Eco24I	GRGCYC	2 cut(s)	33, 973
Eco32I	GATATC	2 cut(s)	1106, 1322
Eco47I	GGWCC	5 cut(s)	629, 980, 1217, 1637, 1835
Eco57I	CTGAAG	3 cut(s)	304, 455, 1971
Eco72I	CACGTG	1 cut(s)	1787
Eco88I	CYCGRG	2 cut(s)	507, 1971
Eco91I	GGTNACC	1 cut(s)	82
EcoNI	CCTNNNNNAGG	2 cut(s)	1269, 1485
EcoO65I	GGTNACC	1 cut(s)	82
EcoRV	GATATC	2 cut(s)	1106, 1322
EcoT14I	CCWWGG	1 cut(s)	388
EcoT22I	ATGCAT	1 cut(s)	1057
EcoT38I	GRGCYC	2 cut(s)	33, 973
ErhI	CCWWGG	1 cut(s)	388
FaeI	CATG	2 cut(s)	559, 1376
FaqI	GGGAC	3 cut(s)	116, 1621, 1821
FatI	CATG	2 cut(s)	555, 1372
FauI	CCCGC	2 cut(s)	83, 1543
FauNDI	CATATG	2 cut(s)	1633, 1981
FblI	GTMKAC	3 cut(s)	165, 772, 1559
FokI	GGATG	4 cut(s)	158, 799, 1710, 1783
FriOI	GRGCYC	2 cut(s)	33, 973
FspBI	CTAG	7 cut(s)	276, 540, 756, 843, 975, 1242, 1524
GlaI	GCGC	4 cut(s)	191, 193, 272, 1662
GsaI	CCCAGC	2 cut(s)	970, 1415
GsuI	CTGGAG	7 cut(s)	504, 549, 687, 942, 1401, 1470, 1716
HaeII	RGCGCY	1 cut(s)	274
HaeIII	GGCC	6 cut(s)	5, 31, 258, 1257, 1350, 1494
HapII	CCGG	9 cut(s)	27, 39, 87, 246, 306, 801, 1020, 1074, 1091
HhaI	GCGC	4 cut(s)	192, 194, 273, 1663
Hin1II	CATG	2 cut(s)	559, 1376
Hin6I	GCGC	4 cut(s)	190, 192, 271, 1661
HinP1I	GCGC	4 cut(s)	190, 192, 271, 1661
HincII	GTYRAC	3 cut(s)	166, 654, 1709
HindII	GTYRAC	3 cut(s)	166, 654, 1709
HpaI	GTTAAC	1 cut(s)	654
HpaII	CCGG	9 cut(s)	27, 39, 87, 246, 306, 801, 1020, 1074, 1091
HphI	GGTGA	6 cut(s)	76, 320, 464, 790, 815, 1674
Hpy188I	TCNGA	2 cut(s)	337, 817
Hpy188III	TCNNGA	8 cut(s)	197, 483, 566, 645, 1020, 1304, 1418, 1758
Hpy99I	CGWCG	4 cut(s)	11, 167, 170, 367
HpyAV	CCTTC	4 cut(s)	642, 1074, 1764, 1946
HpyCH4III	ACNGT	5 cut(s)	826, 870, 899, 1017, 1508
HpyCH4IV	ACGT	3 cut(s)	137, 952, 1786
HpySE526I	ACGT	3 cut(s)	137, 952, 1786
Hsp92II	CATG	2 cut(s)	559, 1376
HspAI	GCGC	4 cut(s)	190, 192, 271, 1661
Kpn2I	TCCGGA	1 cut(s)	1019
KroI	GCCGGC	1 cut(s)	245
KroNI	GCCGGC	1 cut(s)	247
KspAI	GTTAAC	1 cut(s)	654
Kzo9I	GATC	5 cut(s)	366, 552, 1120, 1366, 1442
LweI	GCATC	7 cut(s)	328, 502, 508, 799, 1064, 1103, 1732
MabI	ACCWGGT	1 cut(s)	997
MaeI	CTAG	7 cut(s)	276, 540, 756, 843, 975, 1242, 1524
MaeII	ACGT	3 cut(s)	137, 952, 1786
MaeIII	GTNAC	5 cut(s)	82, 308, 502, 1244, 1680
MalI	GATC	5 cut(s)	368, 554, 1122, 1368, 1444
MboI	GATC	5 cut(s)	366, 552, 1120, 1366, 1442
MboII	GAAGA	2 cut(s)	461, 785
MfeI	CAATTG	1 cut(s)	1114
MflI	RGATCY	1 cut(s)	1442
MhlI	GDGCHC	7 cut(s)	33, 973, 1654, 1786, 1792, 1855, 2005
MlsI	TGGCCA	2 cut(s)	1257, 1350
MluCI	AATT	7 cut(s)	529, 573, 690, 717, 852, 1114, 1249
MluNI	TGGCCA	2 cut(s)	1257, 1350
MlyI	GAGTC	3 cut(s)	119, 1603, 2043
Mox20I	TGGCCA	2 cut(s)	1257, 1350
Mph1103I	ATGCAT	1 cut(s)	1057
MroI	TCCGGA	1 cut(s)	1019
MroNI	GCCGGC	1 cut(s)	245
MscI	TGGCCA	2 cut(s)	1257, 1350
MseI	TTAA	5 cut(s)	462, 528, 653, 741, 876
Msp20I	TGGCCA	2 cut(s)	1257, 1350
MspA1I	CMGCKG	4 cut(s)	1130, 1232, 1718, 1817
MspI	CCGG	9 cut(s)	27, 39, 87, 246, 306, 801, 1020, 1074, 1091
MunI	CAATTG	1 cut(s)	1114
Mva1269I	GAATGC	1 cut(s)	1584
MvnI	CGCG	1 cut(s)	192
NaeI	GCCGGC	1 cut(s)	247
NciI	CCSGG	3 cut(s)	28, 801, 1074
NdeI	CATATG	2 cut(s)	1633, 1981
NdeII	GATC	5 cut(s)	366, 552, 1120, 1366, 1442
NgoMIV	GCCGGC	1 cut(s)	245
NlaIII	CATG	2 cut(s)	559, 1376
NlaIV	GGNNCC	9 cut(s)	31, 66, 386, 490, 972, 1329, 1493, 1837, 1887
NmuCI	GTSAC	3 cut(s)	82, 308, 1680
NsiI	ATGCAT	1 cut(s)	1057
PaeR7I	CTCGAG	1 cut(s)	1971
PaqCI	CACCTGC	4 cut(s)	1151, 1366, 1627, 1873
PauI	GCGCGC	1 cut(s)	190
PctI	GAATGC	1 cut(s)	1584
PdiI	GCCGGC	1 cut(s)	247
PfeI	GAWTC	8 cut(s)	35, 263, 302, 496, 620, 781, 1454, 1775
PflFI	GACNNNGTC	1 cut(s)	128
PflMI	CCANNNNNTGG	7 cut(s)	966, 1004, 1116, 1574, 1757, 1847, 1877
PfoI	TCCNGGA	1 cut(s)	1693
PleI	GAGTC	3 cut(s)	119, 1603, 2042
PmaCI	CACGTG	1 cut(s)	1787
PmlI	CACGTG	1 cut(s)	1787
PpsI	GAGTC	3 cut(s)	119, 1603, 2042
Ppu21I	YACGTR	1 cut(s)	1787
PspCI	CACGTG	1 cut(s)	1787
PspEI	GGTNACC	1 cut(s)	82
PspFI	CCCAGC	2 cut(s)	966, 1411
PspN4I	GGNNCC	9 cut(s)	31, 66, 386, 490, 972, 1329, 1493, 1837, 1887
PspOMI	GGGCCC	1 cut(s)	29
PspPI	GGNCC	8 cut(s)	29, 30, 629, 980, 1217, 1492, 1637, 1835
PspXI	VCTCGAGB	1 cut(s)	1971
PstI	CTGCAG	2 cut(s)	1387, 1918
PsuI	RGATCY	1 cut(s)	1442
PsyI	GACNNNGTC	1 cut(s)	128
PteI	GCGCGC	1 cut(s)	190
PvuII	CAGCTG	2 cut(s)	1130, 1718
RsaI	GTAC	2 cut(s)	760, 828
RsaNI	GTAC	2 cut(s)	759, 827
SalI	GTCGAC	1 cut(s)	164
SaqAI	TTAA	5 cut(s)	462, 528, 653, 741, 876
Sau3AI	GATC	5 cut(s)	366, 552, 1120, 1366, 1442
Sau96I	GGNCC	8 cut(s)	29, 30, 629, 980, 1217, 1492, 1637, 1835
ScaI	AGTACT	1 cut(s)	760
SchI	GAGTC	3 cut(s)	119, 1603, 2043
SduI	GDGCHC	7 cut(s)	33, 973, 1654, 1786, 1792, 1855, 2005
SexAI	ACCWGGT	1 cut(s)	997
SfaNI	GCATC	7 cut(s)	328, 502, 508, 799, 1064, 1103, 1732
SfcI	CTRYAG	4 cut(s)	142, 1383, 1812, 1914
Sfr274I	CTCGAG	1 cut(s)	1971
SgrDI	CGTCGACG	1 cut(s)	164
SinI	GGWCC	5 cut(s)	629, 980, 1217, 1637, 1835
SlaI	CTCGAG	1 cut(s)	1971
SmlI	CTYRAG	3 cut(s)	1302, 1656, 1971
SmoI	CTYRAG	3 cut(s)	1302, 1656, 1971
SpeI	ACTAGT	1 cut(s)	842
Sse9I	AATT	7 cut(s)	529, 573, 690, 717, 852, 1114, 1249
SspMI	CTAG	7 cut(s)	276, 540, 756, 843, 975, 1242, 1524
StyI	CCWWGG	1 cut(s)	388
TaaI	ACNGT	5 cut(s)	826, 870, 899, 1017, 1508
TaiI	ACGT	3 cut(s)	140, 955, 1789
TaqI	TCGA	6 cut(s)	165, 211, 300, 365, 646, 1972
TasI	AATT	7 cut(s)	529, 573, 690, 717, 852, 1114, 1249
TatI	WGTACW	2 cut(s)	758, 826
TauI	GCSGC	6 cut(s)	237, 252, 255, 258, 1264, 1820
TfiI	GAWTC	8 cut(s)	35, 263, 302, 496, 620, 781, 1454, 1775
Tru1I	TTAA	5 cut(s)	462, 528, 653, 741, 876
Tru9I	TTAA	5 cut(s)	462, 528, 653, 741, 876
TscAI	CASTG	2 cut(s)	967, 1513
TseFI	GTSAC	3 cut(s)	82, 308, 1680
Tsp45I	GTSAC	3 cut(s)	82, 308, 1680
TspDTI	ATGAA	3 cut(s)	615, 701, 894
TspRI	CASTG	2 cut(s)	967, 1513
Tth111I	GACNNNGTC	1 cut(s)	128
Van91I	CCANNNNNTGG	7 cut(s)	966, 1004, 1116, 1574, 1757, 1847, 1877
VneI	GTGCAC	2 cut(s)	1782, 1851
VpaK11BI	GGWCC	5 cut(s)	629, 980, 1217, 1637, 1835
XagI	CCTNNNNNAGG	2 cut(s)	1269, 1485
XapI	RAATTY	1 cut(s)	690
XhoI	CTCGAG	1 cut(s)	1971
XmiI	GTMKAC	3 cut(s)	165, 772, 1559
XspI	CTAG	7 cut(s)	276, 540, 756, 843, 975, 1242, 1524
ZrmI	AGTACT	1 cut(s)	760
Zsp2I	ATGCAT	1 cut(s)	1057

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.