Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003328

Physical Location & Seq

Genomic Coordinates Reverse (-)

8120204 .. 8128973

Gene Structure 8770 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16854

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2808 bp

ATGCCATTTGAAGTAATGGATCAAAGGGGTGTATCTGTCTCTTCCCACTTCTTTGAAGAAATTCCTTTTCCTTCCGAGAGACAAGTTGGATTTCAGAAGCTGAAAACCATGCCTGATCACCAAGTGGGAGTGGATAGAACAGTGCCGACAGCTGGCAGCATATTCGATCCTTCATTACCCTCAAAAAGGTTTTTACCAATTGGGGCACAATCAGTGGATTACTTTGATATGCCACAATCCAATCTGGCTGGGGAGCGCACAGAAAGGCTAAGCATTAGTGGAGGAGTTGCCAATACATCTAAGGCCTCGTGGAAACCTATGAATCATCATCCAAAATTGTGGTCAGACTTGCCCACACGGCCAACATCCCATAGCTTGGTTGGAAGCAAAACTGCTATTAATGGTGCTCAGCATGAAAGCAGTCTGTTCTCAAGCTCATTGTCTGAAATTTTTACTAGAAAATTGAGATTGCTAAAGGGTGATTTTGTATCTCATCAATCTACAAATACTGTTGCTTCCCAACATGAGGAAGAGCCCTTTGAATCGCTTGAAGAAATGGAAGCACAAACCATTGGAAATCTCCTTCCTGATGAAAATGATTTGTTTTCTGGCATGATAGATGGTCCGGGTAAACTTGTGCATGGTAGTAATGGGGATGAATTGGAAGATTTTGATCTTTTTAGCAGTGGTGGCGGCTTGGAATTAGAAGGAGATGATCAAGGGCACCCTTCTAGAACACTTTTTGTTCGAAATATTAATAGCAATGTTGAAGATTTGGAATTGAAGGATCTTTTTGAGCAATATGGAGATATCCGAACACTTTACACAGCCTGCAAGCATCGTGGGTTTGTTATGATTTCTTATTATGATATAAGGGCTGCCCAAAAAGCGATAAGAGCACTACAGAGTAAGCCACTGAGGCGTAGGAAGCTTGACATACACTATTCGATACCCAAGGACAACCCTTCTGATAAAGATGTTAACCAAGGAACACTTGAGGTATACAATGTTGATTCTTCTGTTTCTGATGATGAGCTTACTAAACTTTTCGAATCTTATGGGGAAATCAAAGAGATCCTCGAGGCTCCAAACAAGAGTCATAACAAGTTGATAGAATTTTATGATGTTAGAGCTGCAGAAGCTGCTCTTCATGCATTGAATACGAGTGAGATTGGTGGGAAGCAGATCAAGCTTGAACCCAGCCATCCAGGGGTTGCCAGAATGGGTTTCGGTCAAGGTTCCAAGCAGGAGCAAGATGAATTTAATATTTGTCATAGTCCATCCGACAACTTGTCAGCAGGATGCAAGGCAACCCTTCATCCTGGAATGGCTAATGAATCTAACCTGGGATTACATTCTTCAATTCGATCACCTTCCAATGCATTTATGGGAAATGCTTTAGCGCATCTGAGTTCAAGTGTTCCGCGTACGTTGCCCTCTCCGATGAGAGTGGTGTCTGCGGACAAAAACTTTTGCCTTCCTGATTCCAATCACTCTCTGAATGAAATTAAGTTTGGTAACCAGTGTGTTCCCAATTTCCATCCGCATTCCCTCCCTGAGTATCATGACAGTTTAGCACATGGTATCACATCCAACTCCAGTGGAGTGACTGGCAATGTGGGCCTTAGAATGACAGAAGGAACCGACAGGAGGCACATTCGTGAAATGAATGCAAATGGGCACCTGATGGAACTGAACGGAGGAGGAGCTTTTGCATCTTCTGGAAATGGGAGTGCTGGGGTTCGCGGACATCATTATGTTTCCAATTCTTATCAGCAGCATCCTTCAAGTCCCATGATGTGGCAGAATTCACCATCATTTATCAATGGTCCTCATGCTCATCGCTTTCCACAAATGCCTGGCTTCCCTAGAACACCTCCTCACATGCTGAATGGGACATCACCTGTCCGCCACCATGTTGGATCAGCACCAGCAGTTAACCCATCCCTTTGGGAAAGACATGCATTTTCAGGACAGTCTCCTGACACTTCTAGTCTTCACCTGGGATCTCCTAGCTTCGCCTGTTTTCCCAGTAGTCCCCAGTTGCATCCTATGGAAGTTCCGTCACGCAACATCTTTTCTCTTGTTGGTGGAAATTGCTCAGACATGAATACAAGTACCCGGCAACGCTCTTCGCAGGAGATCTGCCACATGTTTCCTGGGAGGAATTCAATGATGTCGATGCCTACCTCTTTTGGTTCACCAAATGAACGTGTCAGAAATCTATCTCACCGTAGAAGTGAAGCAAACTCTCATAATGCTGATAGGAAACAATATGAACTTGATATTGAGCGCATATTGCGTGGGGATGACAATCGAACCACACTGATGATAAAGAACATTCCCAACAAGTATACTTCAAAGATGCTGCTTGCAGTAATTGATGAGAACTGTCGAGGAATATATGACTTTATTTATTTGCCAATTGACTTCAAGAACAAATGCAATGTGGGATATGCATTCATCAACATGATTGATCCTCAACAGATTGTTCCATTCTATAAGGCATTCAATGGCAAAAAATGGGAGAAGTTCAACAGTGAAAAGGTTGCAACACTTGCATATGCTCGTATTCAGGGAAAAGCTGCTCTTATTGCCCATTTCCAGAATTCAAGCTTAATGAATGAGGACAAACGGTGTCGCCCTATACTCTTCCACACAGATGGACCAAATGCTGGGGACCCGGAACCCTTTCCAATGGGCACCCACATCCGATCAAGACCAGGAAGATCTCGAACCAGTGGCTATGAGGAAAGCCATAACCAATGGAGCCCATCTTCATCTGCAAATGGAGAGGAAAGTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0008150 GO:0010564 GO:0010638 GO:0033043 GO:0040008 GO:0040020 GO:0045787 GO:0045836 GO:0045927 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051445 GO:0051446 GO:0051726 GO:0051783 GO:0051785 GO:0065007 GO:0090068 GO:0097159 GO:1901363 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 RRM_2

Protein Analysis

935

Amino Acids

103.58

Weight (kDa)

6.43

Isoelectric Point (pI)

55.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	247 - 311	2.9e-11	RNA recognition motif
RRM_1	PF00076	334 - 397	1.2e-07	RNA recognition motif
RRM_2	PF04059	773 - 869	6.9e-54	RNA recognition motif 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07290 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960
fragaria_vesca	FvH4_5g09460
malus_domestica	MD06G1131000.v1.1 MD14G1147600.v1.1
prunus_persica	Prupe.5G142200_v2.0.a1 Prupe.5G142200_v2.0.a1 Prupe.5G142200_v2.0.a1 Prupe.5G142200_v2.0.a1 Prupe.5G142200_v2.0.a1
pyrus_communis	pycom06g12260 pycom14g12230
rosa_chinensis	RchiOBHm_Chr7g0188731
rosa_laevigata	RLG00000004666
rosa_multiflora	Rmu_sc0003854.1_g000006
rosa_roxburghii	Rroxscaffold_3G00266090
rosa_rugosa	Rorug06G0493200.1 Rorug06G0493300.1 Rorug06G0493400 Rorug06G0493400 Rorug06G0493500
rosa_samantha	Rh7AG098000 Rh7BG099400 Rh7CG101200 Rh7DG099800
rosa_wichuraiana	Rw7G008440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	1079
AccB1I	GGYRCC	3 cut(s)	723, 1680, 2702
AccB7I	CCANNNNNTGG	3 cut(s)	376, 1800, 2675
AccI	GTMKAC	2 cut(s)	1002, 2354
AccII	CGCG	2 cut(s)	1426, 1746
AciI	CCGC	6 cut(s)	693, 1424, 1460, 1544, 1746, 1909
AclWI	GGATC	7 cut(s)	27, 161, 795, 1069, 1930, 2014, 2471
AcoI	YGGCCR	1 cut(s)	359
AcsI	RAATTY	7 cut(s)	60, 447, 1115, 1259, 1807, 2167, 2608
AdeI	CACNNNGTG	1 cut(s)	124
AfaI	GTAC	2 cut(s)	1429, 2119
AfiI	CCNNNNNNNGG	8 cut(s)	152, 186, 376, 526, 1210, 1650, 1800, 2675
AflIII	ACRYGT	2 cut(s)	2151, 2212
AhdI	GACNNNNNGTC	1 cut(s)	1291
AjnI	CCWGG	7 cut(s)	1207, 1321, 1344, 1858, 2001, 2158, 2722
AjuI	GAANNNNNNNTTGG	2 cut(s)	1497, 1529
AleI	CACNNNNGTG	1 cut(s)	1659
Alw21I	GWGCWC	2 cut(s)	409, 901
Alw26I	GTCTC	3 cut(s)	43, 73, 1983
AlwI	GGATC	7 cut(s)	27, 161, 795, 1069, 1930, 2014, 2471
AlwNI	CAGNNNCTG	2 cut(s)	100, 1142
Ama87I	CYCGRG	1 cut(s)	1079
AoxI	GGCC	3 cut(s)	303, 359, 1621
ApeKI	GCWGC	7 cut(s)	156, 878, 1133, 1142, 1777, 2368, 2585
ApoI	RAATTY	7 cut(s)	60, 447, 1115, 1259, 1807, 2167, 2608
ArsI	GACNNNNNNTTYG	2 cut(s)	326, 358
AseI	ATTAAT	2 cut(s)	399, 756
Asp700I	GAANNNNTTC	2 cut(s)	60, 2691
AspLEI	GCGC	3 cut(s)	258, 1405, 2295
AspS9I	GGNCC	5 cut(s)	623, 1621, 1829, 2666, 2680
AsuC2I	CCSGG	3 cut(s)	627, 2122, 2684
AsuHPI	GGTGA	8 cut(s)	110, 491, 1362, 1803, 1893, 1991, 2193, 2222
AsuII	TTCGAA	2 cut(s)	748, 1050
AvaI	CYCGRG	1 cut(s)	1079
AvaII	GGWCC	4 cut(s)	623, 1829, 2666, 2680
BaeGI	GKGCMC	4 cut(s)	208, 726, 1683, 2705
BanI	GGYRCC	3 cut(s)	723, 1680, 2702
BanII	GRGCYC	2 cut(s)	537, 2774
BauI	CACGAG	1 cut(s)	307
BbsI	GAAGAC	1 cut(s)	1988
Bbv12I	GWGCWC	2 cut(s)	409, 901
BbvI	GCAGC	7 cut(s)	168, 865, 1120, 1129, 1789, 2355, 2572
BccI	CCATC	9 cut(s)	614, 1212, 1288, 1548, 1681, 1822, 1951, 2657, 2782
BceAI	ACGGC	1 cut(s)	374
BcgI	CGANNNNNNTGC	2 cut(s)	145, 179
BciT130I	CCWGG	7 cut(s)	1209, 1323, 1346, 1860, 2003, 2160, 2724
BclI	TGATCA	2 cut(s)	115, 715
BcnI	CCSGG	3 cut(s)	627, 2122, 2684
BcoDI	GTCTC	3 cut(s)	43, 73, 1983
BfaI	CTAG	6 cut(s)	456, 732, 1869, 1992, 2013, 2806
BfmI	CTRYAG	2 cut(s)	902, 1134
BglI	GCCNNNNNGGC	2 cut(s)	358, 919
BglII	AGATCT	2 cut(s)	2142, 2729
BisI	GCNGC	8 cut(s)	157, 694, 879, 1134, 1143, 1778, 2369, 2586
BlpI	GCTNAGC	2 cut(s)	269, 408
BlsI	GCNGC	8 cut(s)	158, 695, 880, 1135, 1144, 1779, 2370, 2587
Bme18I	GGWCC	4 cut(s)	623, 1829, 2666, 2680
BmeRI	GACNNNNNGTC	1 cut(s)	1291
BmeT110I	CYCGRG	1 cut(s)	1079
BmgT120I	GGNCC	5 cut(s)	623, 1621, 1829, 2666, 2680
BmrI	ACTGGG	2 cut(s)	2025, 2035
BmsI	GCATC	8 cut(s)	847, 1292, 1414, 1724, 1789, 2056, 2172, 2355
BmuI	ACTGGG	2 cut(s)	2025, 2035
BpiI	GAAGAC	1 cut(s)	1988
BpmI	CTGGAG	1 cut(s)	1582
Bpu1102I	GCTNAGC	2 cut(s)	269, 408
Bpu14I	TTCGAA	2 cut(s)	748, 1050
BpuEI	CTTGAG	2 cut(s)	415, 1016
BpuMI	CCSGG	3 cut(s)	627, 2122, 2684
BsaBI	GATNNNNATC	3 cut(s)	672, 1488, 2313
BsaJI	CCNNGG	6 cut(s)	954, 985, 1208, 1345, 2002, 2159
Bsc4I	CCNNNNNNNGG	8 cut(s)	152, 186, 376, 526, 1210, 1650, 1800, 2675
Bse1I	ACTGG	6 cut(s)	1522, 1599, 1615, 2031, 2041, 2739
Bse3DI	GCAATG	3 cut(s)	769, 1621, 2452
Bse8I	GATNNNNATC	3 cut(s)	672, 1488, 2313
BseBI	CCWGG	7 cut(s)	1209, 1323, 1346, 1860, 2003, 2160, 2724
BseDI	CCNNGG	6 cut(s)	954, 985, 1208, 1345, 2002, 2159
BseJI	GATNNNNATC	3 cut(s)	672, 1488, 2313
BseLI	CCNNNNNNNGG	8 cut(s)	152, 186, 376, 526, 1210, 1650, 1800, 2675
BseMI	GCAATG	3 cut(s)	769, 1621, 2452
BseMII	CTCAG	5 cut(s)	422, 908, 1400, 1548, 2115
BseNI	ACTGG	6 cut(s)	1522, 1599, 1615, 2031, 2041, 2739
BseRI	GAGGAG	4 cut(s)	297, 1716, 1719, 1869
BseSI	GKGCMC	4 cut(s)	208, 726, 1683, 2705
BseXI	GCAGC	7 cut(s)	168, 865, 1120, 1129, 1789, 2355, 2572
BseYI	CCCAGC	4 cut(s)	248, 1199, 1736, 2675
Bsh1236I	CGCG	2 cut(s)	1426, 1746
BshFI	GGCC	3 cut(s)	305, 361, 1623
BshNI	GGYRCC	3 cut(s)	723, 1680, 2702
BsiHKAI	GWGCWC	2 cut(s)	409, 901
BsiHKCI	CYCGRG	1 cut(s)	1079
BsiSI	CCGG	3 cut(s)	626, 2122, 2684
BsiWI	CGTACG	1 cut(s)	1427
BslFI	GGGAC	4 cut(s)	1776, 1909, 2022, 2693
BslI	CCNNNNNNNGG	8 cut(s)	152, 186, 376, 526, 1210, 1650, 1800, 2675
BsmAI	GTCTC	3 cut(s)	43, 73, 1983
BsmFI	GGGAC	4 cut(s)	1776, 1909, 2022, 2693
BsmI	GAATGC	4 cut(s)	1546, 1675, 2459, 2507
BsnI	GGCC	3 cut(s)	305, 361, 1623
BsoBI	CYCGRG	1 cut(s)	1079
Bsp119I	TTCGAA	2 cut(s)	748, 1050
Bsp1286I	GDGCHC	8 cut(s)	208, 409, 537, 726, 901, 1683, 2705, 2774
Bsp1720I	GCTNAGC	2 cut(s)	269, 408
BspACI	CCGC	6 cut(s)	693, 1424, 1460, 1544, 1746, 1909
BspANI	GGCC	3 cut(s)	305, 361, 1623
BspCNI	CTCAG	5 cut(s)	421, 909, 1401, 1549, 2114
BspFNI	CGCG	2 cut(s)	1426, 1746
BspHI	TCATGA	1 cut(s)	1564
BspMAI	CTGCAG	1 cut(s)	1138
BspPI	GGATC	7 cut(s)	27, 161, 795, 1069, 1930, 2014, 2471
BspQI	GCTCTTC	3 cut(s)	525, 1152, 2137
BspT104I	TTCGAA	2 cut(s)	748, 1050
BspT107I	GGYRCC	3 cut(s)	723, 1680, 2702
BsrDI	GCAATG	3 cut(s)	769, 1621, 2452
BsrI	ACTGG	6 cut(s)	1522, 1599, 1615, 2031, 2041, 2739
BssECI	CCNNGG	6 cut(s)	954, 985, 1208, 1345, 2002, 2159
BssNAI	GTATAC	2 cut(s)	1003, 2355
BssSI	CACGAG	1 cut(s)	307
BssT1I	CCWWGG	2 cut(s)	954, 985
Bst1107I	GTATAC	2 cut(s)	1003, 2355
Bst2BI	CACGAG	1 cut(s)	307
Bst2UI	CCWGG	7 cut(s)	1209, 1323, 1346, 1860, 2003, 2160, 2724
Bst4CI	ACNGT	8 cut(s)	142, 511, 1571, 1977, 2234, 2393, 2540, 2637
Bst6I	CTCTTC	5 cut(s)	46, 525, 1152, 2137, 2657
BstAPI	GCANNNNNTGC	2 cut(s)	1142, 2558
BstBI	TTCGAA	2 cut(s)	748, 1050
BstC8I	GCNNGC	4 cut(s)	154, 832, 836, 2373
BstDEI	CTNAG	8 cut(s)	269, 300, 408, 917, 1409, 1557, 1625, 2101
BstEII	GGTNACC	1 cut(s)	1517
BstENI	CCTNNNNNAGG	1 cut(s)	184
BstFNI	CGCG	2 cut(s)	1426, 1746
BstHHI	GCGC	3 cut(s)	258, 1405, 2295
BstMAI	GTCTC	3 cut(s)	43, 73, 1983
BstNI	CCWGG	7 cut(s)	1209, 1323, 1346, 1860, 2003, 2160, 2724
BstNSI	RCATGY	3 cut(s)	1888, 1964, 2155
BstPI	GGTNACC	1 cut(s)	1517
BstSFI	CTRYAG	2 cut(s)	902, 1134
BstSLI	GKGCMC	4 cut(s)	208, 726, 1683, 2705
BstUI	CGCG	2 cut(s)	1426, 1746
BstV1I	GCAGC	7 cut(s)	168, 865, 1120, 1129, 1789, 2355, 2572
BstV2I	GAAGAC	1 cut(s)	1988
BstX2I	RGATCY	5 cut(s)	787, 1074, 2006, 2142, 2729
BstXI	CCANNNNNNTGG	4 cut(s)	339, 1919, 1950, 2663
BstYI	RGATCY	5 cut(s)	787, 1074, 2006, 2142, 2729
BstZ17I	GTATAC	2 cut(s)	1003, 2355
BsuRI	GGCC	3 cut(s)	305, 361, 1623
BtgZI	GCGATG	1 cut(s)	1826
BtsI	GCAGTG	1 cut(s)	691
BtsIMutI	CAGTG	9 cut(s)	147, 219, 691, 914, 1529, 1606, 2324, 2545, 2746
Cac8I	GCNNGC	4 cut(s)	154, 832, 836, 2373
CaiI	CAGNNNCTG	2 cut(s)	100, 1142
CciI	TCATGA	1 cut(s)	1564
CfoI	GCGC	3 cut(s)	258, 1405, 2295
Cfr13I	GGNCC	5 cut(s)	623, 1621, 1829, 2666, 2680
Csp6I	GTAC	2 cut(s)	1428, 2118
CspCI	CAANNNNNGTGG	4 cut(s)	823, 858, 1582, 1617
CviQI	GTAC	2 cut(s)	1428, 2118
DdeI	CTNAG	8 cut(s)	269, 300, 408, 917, 1409, 1557, 1625, 2101
DraIII	CACNNNGTG	1 cut(s)	124
DriI	GACNNNNNGTC	1 cut(s)	1291
EaeI	YGGCCR	1 cut(s)	359
Eam1104I	CTCTTC	5 cut(s)	46, 525, 1152, 2137, 2657
Eam1105I	GACNNNNNGTC	1 cut(s)	1291
EarI	CTCTTC	5 cut(s)	46, 525, 1152, 2137, 2657
EciI	GGCGGA	1 cut(s)	1898
Eco130I	CCWWGG	2 cut(s)	954, 985
Eco147I	AGGCCT	1 cut(s)	305
Eco24I	GRGCYC	2 cut(s)	537, 2774
Eco32I	GATATC	1 cut(s)	811
Eco47I	GGWCC	4 cut(s)	623, 1829, 2666, 2680
Eco88I	CYCGRG	1 cut(s)	1079
Eco91I	GGTNACC	1 cut(s)	1517
EcoNI	CCTNNNNNAGG	1 cut(s)	184
EcoO109I	RGGNCCY	1 cut(s)	2680
EcoO65I	GGTNACC	1 cut(s)	1517
EcoRI	GAATTC	3 cut(s)	1807, 2167, 2608
EcoRII	CCWGG	7 cut(s)	1207, 1321, 1344, 1858, 2001, 2158, 2722
EcoRV	GATATC	1 cut(s)	811
EcoT14I	CCWWGG	2 cut(s)	954, 985
EcoT22I	ATGCAT	4 cut(s)	1156, 1384, 1966, 2461
EcoT38I	GRGCYC	2 cut(s)	537, 2774
ErhI	CCWWGG	2 cut(s)	954, 985
FalI	AAGNNNNNCTT	6 cut(s)	978, 1010, 1131, 1163, 2574, 2606
FaqI	GGGAC	4 cut(s)	1776, 1909, 2022, 2693
FauNDI	CATATG	1 cut(s)	2563
FbaI	TGATCA	2 cut(s)	115, 715
FblI	GTMKAC	2 cut(s)	1002, 2354
Fnu4HI	GCNGC	8 cut(s)	157, 694, 879, 1134, 1143, 1778, 2369, 2586
FriOI	GRGCYC	2 cut(s)	537, 2774
Fsp4HI	GCNGC	8 cut(s)	157, 694, 879, 1134, 1143, 1778, 2369, 2586
FspBI	CTAG	6 cut(s)	456, 732, 1869, 1992, 2013, 2806
GlaI	GCGC	3 cut(s)	257, 1404, 2294
GluI	GCNGC	8 cut(s)	157, 694, 879, 1134, 1143, 1778, 2369, 2586
GsaI	CCCAGC	4 cut(s)	252, 1203, 1740, 2679
GsuI	CTGGAG	1 cut(s)	1582
HaeIII	GGCC	3 cut(s)	305, 361, 1623
HapII	CCGG	3 cut(s)	626, 2122, 2684
HhaI	GCGC	3 cut(s)	258, 1405, 2295
Hin6I	GCGC	3 cut(s)	256, 1403, 2293
HinP1I	GCGC	3 cut(s)	256, 1403, 2293
HincII	GTYRAC	2 cut(s)	982, 1939
HindII	GTYRAC	2 cut(s)	982, 1939
HindIII	AAGCTT	3 cut(s)	929, 1190, 2614
HinfI	GANTC	7 cut(s)	322, 542, 1013, 1052, 1096, 1337, 1484
HpaI	GTTAAC	2 cut(s)	982, 1939
HpaII	CCGG	3 cut(s)	626, 2122, 2684
HphI	GGTGA	8 cut(s)	110, 491, 1362, 1803, 1893, 1991, 2193, 2222
Hpy166II	GTNNAC	6 cut(s)	632, 982, 1003, 1939, 2201, 2355
Hpy8I	GTNNAC	6 cut(s)	632, 982, 1003, 1939, 2201, 2355
HpyCH4III	ACNGT	8 cut(s)	142, 511, 1571, 1977, 2234, 2393, 2540, 2637
HpyCH4IV	ACGT	2 cut(s)	1430, 2212
HpyF3I	CTNAG	8 cut(s)	269, 300, 408, 917, 1409, 1557, 1625, 2101
HpySE526I	ACGT	2 cut(s)	1430, 2212
HspAI	GCGC	3 cut(s)	256, 1403, 2293
KflI	GGGWCCC	1 cut(s)	2680
Ksp22I	TGATCA	2 cut(s)	115, 715
KspAI	GTTAAC	2 cut(s)	982, 1939
LguI	GCTCTTC	3 cut(s)	525, 1152, 2137
LmnI	GCTCC	5 cut(s)	253, 1090, 1249, 1706, 2769
Lsp1109I	GCAGC	7 cut(s)	168, 865, 1120, 1129, 1789, 2355, 2572
LweI	GCATC	8 cut(s)	847, 1292, 1414, 1724, 1789, 2056, 2172, 2355
MaeI	CTAG	6 cut(s)	456, 732, 1869, 1992, 2013, 2806
MaeII	ACGT	2 cut(s)	1430, 2212
MaeIII	GTNAC	3 cut(s)	1517, 1606, 2064
MfeI	CAATTG	2 cut(s)	198, 2424
MflI	RGATCY	5 cut(s)	787, 1074, 2006, 2142, 2729
MhlI	GDGCHC	8 cut(s)	208, 409, 537, 726, 901, 1683, 2705, 2774
MlyI	GAGTC	1 cut(s)	1105
MmeI	TCCRAC	5 cut(s)	67, 361, 1308, 1617, 1900
Mph1103I	ATGCAT	4 cut(s)	1156, 1384, 1966, 2461
MroXI	GAANNNNTTC	2 cut(s)	60, 2691
MseI	TTAA	7 cut(s)	399, 756, 981, 1263, 1509, 1938, 2618
MslI	CAYNNNNRTG	5 cut(s)	1659, 1755, 2327, 2468, 2661
MspA1I	CMGCKG	1 cut(s)	152
MspI	CCGG	3 cut(s)	626, 2122, 2684
MunI	CAATTG	2 cut(s)	198, 2424
Mva1269I	GAATGC	4 cut(s)	1546, 1675, 2459, 2507
MvaI	CCWGG	7 cut(s)	1209, 1323, 1346, 1860, 2003, 2160, 2724
MvnI	CGCG	2 cut(s)	1426, 1746
NciI	CCSGG	3 cut(s)	627, 2122, 2684
NdeI	CATATG	1 cut(s)	2563
NmuCI	GTSAC	2 cut(s)	1606, 2064
NsiI	ATGCAT	4 cut(s)	1156, 1384, 1966, 2461
NspI	RCATGY	3 cut(s)	1888, 1964, 2155
NspV	TTCGAA	2 cut(s)	748, 1050
OliI	CACNNNNGTG	1 cut(s)	1659
PaeR7I	CTCGAG	1 cut(s)	1079
PagI	TCATGA	1 cut(s)	1564
PceI	AGGCCT	1 cut(s)	305
PciI	ACATGT	1 cut(s)	2151
PciSI	GCTCTTC	3 cut(s)	525, 1152, 2137
PctI	GAATGC	4 cut(s)	1546, 1675, 2459, 2507
PdmI	GAANNNNTTC	2 cut(s)	60, 2691
PfeI	GAWTC	6 cut(s)	322, 542, 1013, 1052, 1337, 1484
Pfl23II	CGTACG	1 cut(s)	1427
PflMI	CCANNNNNTGG	3 cut(s)	376, 1800, 2675
PfoI	TCCNGGA	1 cut(s)	1321
PkrI	GCNGC	8 cut(s)	158, 695, 880, 1135, 1144, 1779, 2370, 2587
PleI	GAGTC	1 cut(s)	1104
PpsI	GAGTC	1 cut(s)	1104
PpuMI	RGGWCCY	1 cut(s)	2680
PscI	ACATGT	1 cut(s)	2151
PshBI	ATTAAT	2 cut(s)	399, 756
Psp5II	RGGWCCY	1 cut(s)	2680
Psp6I	CCWGG	7 cut(s)	1207, 1321, 1344, 1858, 2001, 2158, 2722
PspEI	GGTNACC	1 cut(s)	1517
PspFI	CCCAGC	4 cut(s)	248, 1199, 1736, 2675
PspGI	CCWGG	7 cut(s)	1207, 1321, 1344, 1858, 2001, 2158, 2722
PspLI	CGTACG	1 cut(s)	1427
PspPI	GGNCC	5 cut(s)	623, 1621, 1829, 2666, 2680
PspPPI	RGGWCCY	1 cut(s)	2680
PspXI	VCTCGAGB	1 cut(s)	1079
PstI	CTGCAG	1 cut(s)	1138
PstNI	CAGNNNCTG	2 cut(s)	100, 1142
PsuI	RGATCY	5 cut(s)	787, 1074, 2006, 2142, 2729
PvuII	CAGCTG	1 cut(s)	152
RsaI	GTAC	2 cut(s)	1429, 2119
RsaNI	GTAC	2 cut(s)	1428, 2118
RseI	CAYNNNNRTG	5 cut(s)	1659, 1755, 2327, 2468, 2661
SapI	GCTCTTC	3 cut(s)	525, 1152, 2137
SaqAI	TTAA	7 cut(s)	399, 756, 981, 1263, 1509, 1938, 2618
SatI	GCNGC	8 cut(s)	157, 694, 879, 1134, 1143, 1778, 2369, 2586
Sau96I	GGNCC	5 cut(s)	623, 1621, 1829, 2666, 2680
SchI	GAGTC	1 cut(s)	1105
SduI	GDGCHC	8 cut(s)	208, 409, 537, 726, 901, 1683, 2705, 2774
SfaNI	GCATC	8 cut(s)	847, 1292, 1414, 1724, 1789, 2056, 2172, 2355
SfcI	CTRYAG	2 cut(s)	902, 1134
Sfr274I	CTCGAG	1 cut(s)	1079
SfuI	TTCGAA	2 cut(s)	748, 1050
SinI	GGWCC	4 cut(s)	623, 1829, 2666, 2680
SlaI	CTCGAG	1 cut(s)	1079
SmiMI	CAYNNNNRTG	5 cut(s)	1659, 1755, 2327, 2468, 2661
SmlI	CTYRAG	3 cut(s)	430, 995, 1079
SmoI	CTYRAG	3 cut(s)	430, 995, 1079
SseBI	AGGCCT	1 cut(s)	305
SsiI	CCGC	6 cut(s)	693, 1424, 1460, 1544, 1746, 1909
SspI	AATATT	2 cut(s)	754, 1267
SspMI	CTAG	6 cut(s)	456, 732, 1869, 1992, 2013, 2806
StuI	AGGCCT	1 cut(s)	305
StyI	CCWWGG	2 cut(s)	954, 985
TaaI	ACNGT	8 cut(s)	142, 511, 1571, 1977, 2234, 2393, 2540, 2637
TaiI	ACGT	2 cut(s)	1433, 2215
TaqII	GACCGA	1 cut(s)	1220
TauI	GCSGC	1 cut(s)	696
TfiI	GAWTC	6 cut(s)	322, 542, 1013, 1052, 1337, 1484
Tru1I	TTAA	7 cut(s)	399, 756, 981, 1263, 1509, 1938, 2618
Tru9I	TTAA	7 cut(s)	399, 756, 981, 1263, 1509, 1938, 2618
TscAI	CASTG	9 cut(s)	147, 219, 691, 921, 1529, 1606, 2331, 2545, 2746
TseFI	GTSAC	2 cut(s)	1606, 2064
TseI	GCWGC	7 cut(s)	156, 878, 1133, 1142, 1777, 2368, 2585
Tsp45I	GTSAC	2 cut(s)	1606, 2064
TspGWI	ACGGA	2 cut(s)	1713, 2052
TspRI	CASTG	9 cut(s)	147, 219, 691, 921, 1529, 1606, 2331, 2545, 2746
Van91I	CCANNNNNTGG	3 cut(s)	376, 1800, 2675
VpaK11BI	GGWCC	4 cut(s)	623, 1829, 2666, 2680
VspI	ATTAAT	2 cut(s)	399, 756
XagI	CCTNNNNNAGG	1 cut(s)	184
XapI	RAATTY	7 cut(s)	60, 447, 1115, 1259, 1807, 2167, 2608
XbaI	TCTAGA	1 cut(s)	731
XceI	RCATGY	3 cut(s)	1888, 1964, 2155
XcmI	CCANNNNNNNNNTGG	3 cut(s)	377, 1384, 2156
XhoI	CTCGAG	1 cut(s)	1079
XmiI	GTMKAC	2 cut(s)	1002, 2354
XmnI	GAANNNNTTC	2 cut(s)	60, 2691
XspI	CTAG	6 cut(s)	456, 732, 1869, 1992, 2013, 2806
Zsp2I	ATGCAT	4 cut(s)	1156, 1384, 1966, 2461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.