Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0003328

Physical Location & Seq

Genomic Coordinates Forward (+)

5487435 .. 5496287

Gene Structure 8853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g09460.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2853 bp

ATGCCATTTGAAGTAATGGATCAAAGGGGTGTATCTGTCTCTTCCCACCACTATGAAGAAATTCCTTTTCCTTCTGAGAGACAAGTTGGACACCAGAAGCTGAAAACCATGCCTGATCACCAAGTGGGAATGGATAGAACGGTGCCCACAGCTGGAAGCATGTTTGATCCTTCGTTACCCTCAAAAAGGTTTTTACCAATTGGTGCACAATCAGTGGATTACTTTGATATACCACAATCCACTCTGGCTGGGGAGCGCACAGAAAGGCTAAGCGTTAGTGGAGGAGTTGCCAATGCCTCTAAGGCCTCATGGAAACCTATGAACCATCATCCAAAGTTGTGGCCAGACGTGCCCACAAGGCCAACATCCCATAGCCTGGTTGGAAGCAAAACTGTTATTAATGGTGCTCAGCATGAAAGCAGTCTGTTCTCGAGTTCATTGTCTGACATATTTACTAGAAAGTTGAGACTTCTAAAGAGTGATTTTGTATCCCATCAATCTACAAATACTGTTGCTTCCCAACATGAGGAAGAGCCCTTTGAATCACTTGAAGAAATGGAAGCAAAAACCATTGGAAATCTCCTTCCTGATGAAAATGATTTGTTTTCTGGCCTGATAGATGGTCGGGGTAATAATGTACATGCTAATCATGGGGATGAATTTGAAGATTTTGATCTTTTTAGCAGCGGCGGTGGCATGGAATTAGAAGGAGATGATCAAGGGGGTTGTAATGGTCCACTTGTGGGTGAACACCCCTATGGCGAGCACCCTTCTAGAACACTTTTTGTTCGAAATATTAATAGCAATGTTGAAGATTTGGAATTGAAGGATCTTTTTGAGCAATATGGAGATATCCGAACGCTTTACACAGCCTGCAAGCATCGTGGGTTTGTTATGATTTCTTATTATGATATAAGGGCTGCCCAGAAAGCAATAAGAGCACTGCAGAGTAAGCCACTGAGGCGTAGGAAGCTTGACATACATTATTCAATTCCCAAGGACAACCTTTCTGATAAAGATGTTAACCAAGGAACTCTTGAGGTATACAATGTTGATTCTTCCATTTCCAATGATGAGCTTACTAAAATTTTCGGATCTTATGGGGAAATCAAAGAGATCCGTGAGGCTCCAAACAAGCATCATAACAAATTGATAGAATTTTATGATGTTAGAGCGGCAGAAGCTGCTCTTCATGCATTGACTACAAGTGAGATTGGTGGGAAGCAGATCAAGCTTGAAGCCAGCCATCCAGGGGGCGCCAGAAGGGGTTTCGGTCAAGGTTCCGAGCAGGAGCAAGATGAATTTAATATTTGCCATAGTCCATCCGACAACTTATCAGCAGGATACAATGCAACCCTTCATCCTGGAATGGCTAATGAATCTAACCTGGGATTACATTCTTCAATTCGATCACCTTCCAATGCATTTATGGGAAATGCTTTAGCTCATCTGAGTTCAAGTGTTCCCCGTACCTTGCCCTCTCCGATGAGAGTGGTATCTACAGACAATAACTTCTGCCTTCCTGATTCCAACCACTCTGTGAATGAAATTAAGTTTGGTAACCAGTGCGTACCCAATTTCCATCCGCATTCCCTCCCTGAGTATCATGACAGTTTAGCGCATGGTATTACATCCAACAATTGCGGAGTGACTGGCAATGTGAGCCTTAGATTGGCAGATGGAACAGACAGGAGGCACACTCGTGAAATGAATGCAAATGGTCACCTGATGGAACTGAACGGAGGAGCTTTTGCATCTTCTGGAAATGGGAATGCTGGGGTTCGCGGACATCATTATGTTTTGAATAACTCCAACTCTTATCAGCAGCATCCTTCAAGTCCCATGATGTGGCAGAATTCGCCATCATTTATCAATGGTCCTCATGCTCATCGCTTTTCACAGATGCCTGGCTTCCCTAGGACACCTCCCCATATGCTGAGCGGAACATCACCTGTCCGCCACCATGTTGGATCAGCACCAGCAGTTAACCCTTCCCTTTGGGAAAGACATGCATTTTCAGGACAGTCTCCTGACACCTCTAGTCTTCACCTGGGTTCTCCTAGCTTTGCCTGTTTTCCCAGTAGTCCCCAGTTGCATCCTATGGAAGTTCCCTCACGCAACATCTTTTCTCTTGTTGGTGGAAATGGCTCAGACATGAATACAAGTTCCCGGCAACGCTCTTCGCAGGAGATCCACATGTTTCCTGGGAGGAATTCAATGATGTCGATGCCTACCTCTTTTGGTTCACCAAATGAACGTGTCAGAAACCTCTCTCACCGTAGAAATGAAGCAAACTCTCATAATGCTGATAGGAAACAGTATGAACTTGATATTGAGCGCATATTACGTGGGGATGACAACCGAACCACACTGATGATAAAGAACATTCCCAACAAGTATACTTCAAAGATGCTGCTTGCAGTAATTGATGAGAGCTGTCGAGGAATATATGACTTTATTTATTTGCCAATTGACTTCAAGAACAAATGCAATGTGGGATATGCGTTCATCAACATGGTTGATCCTCAACAGATTGTTCCATTCTATAAGGCATTCAATGGCAAAAAGTGGGAGAAGTTCAACAGTGAAAAGGTTGCAACACTTGCATATGCTCGTATTCAGGGAAAAGCTGCTCTTATTGCCCATTTCCAGAATTCAAGCTTAATGAATGAGGACAAACGCTGTCGCCCTATACTCTTCCACACAGATGGACCAAATGCTGGAGACCCGGAACCCTTTCCAATGGGCACCCACATTCGATCAAGACCAGGAAGATCTCGAACCAGTGGCTATGAGGAAAGCCATACCCAATGGAGCCCCTCTTCTTCTGCAAATGGAGAGGAAAGTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0008150 GO:0010564 GO:0010638 GO:0033043 GO:0040008 GO:0040020 GO:0045787 GO:0045836 GO:0045927 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051445 GO:0051446 GO:0051726 GO:0051783 GO:0051785 GO:0065007 GO:0090068 GO:0097159 GO:1901363 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 RRM_2

Protein Analysis

951

Amino Acids

105.27

Weight (kDa)

6.45

Isoelectric Point (pI)

52.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	261 - 325	2.9e-11	RNA recognition motif
RRM_1	PF00076	348 - 411	9.3e-07	RNA recognition motif
RRM_2	PF04059	788 - 884	7.3e-54	RNA recognition motif 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07290 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960
fragaria_vesca	FvH4_5g09460
malus_domestica	MD06G1131000.v1.1 MD14G1147600.v1.1
prunus_persica	Prupe.5G142200_v2.0.a1 Prupe.5G142200_v2.0.a1 Prupe.5G142200_v2.0.a1 Prupe.5G142200_v2.0.a1 Prupe.5G142200_v2.0.a1
pyrus_communis	pycom06g12260 pycom14g12230
rosa_chinensis	RchiOBHm_Chr7g0188731
rosa_laevigata	RLG00000004666
rosa_multiflora	Rmu_sc0003854.1_g000006
rosa_roxburghii	Rroxscaffold_3G00266090
rosa_rugosa	Rorug06G0493200.1 Rorug06G0493300.1 Rorug06G0493400 Rorug06G0493400 Rorug06G0493500
rosa_samantha	Rh7AG098000 Rh7BG099400 Rh7CG101200 Rh7DG099800
rosa_wichuraiana	Rw7G008440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	142, 1256, 2747
AccB7I	CCANNNNNTGG	3 cut(s)	376, 1848, 2720
AccBSI	CCGCTC	2 cut(s)	1175, 1941
AccI	GTMKAC	2 cut(s)	1044, 2399
AccII	CGCG	1 cut(s)	1785
AciI	CCGC	8 cut(s)	687, 690, 1175, 1586, 1644, 1785, 1941, 1957
AclWI	GGATC	8 cut(s)	27, 161, 837, 1102, 1111, 1978, 2185, 2516
AcoI	YGGCCR	1 cut(s)	341
AcsI	RAATTY	8 cut(s)	60, 659, 1086, 1157, 1301, 1855, 2212, 2653
AcyI	GRCGYC	1 cut(s)	1257
AdeI	CACNNNGTG	2 cut(s)	124, 1540
AfaI	GTAC	3 cut(s)	639, 1471, 1572
AfiI	CCNNNNNNNGG	9 cut(s)	152, 186, 376, 526, 743, 1252, 1672, 1848, 2720
AflIII	ACRYGT	2 cut(s)	2196, 2257
AjiI	CACGTC	1 cut(s)	349
AjnI	CCWGG	8 cut(s)	375, 1249, 1363, 1386, 1906, 2049, 2203, 2767
AjuI	GAANNNNNNNTTGG	2 cut(s)	1539, 1571
AleI	CACNNNNGTG	1 cut(s)	1701
Alw21I	GWGCWC	4 cut(s)	208, 409, 768, 943
Alw26I	GTCTC	5 cut(s)	43, 73, 460, 2031, 2718
Alw44I	GTGCAC	1 cut(s)	204
AlwI	GGATC	8 cut(s)	27, 161, 837, 1102, 1111, 1978, 2185, 2516
AlwNI	CAGNNNCTG	2 cut(s)	100, 1184
Ama87I	CYCGRG	1 cut(s)	430
AoxI	GGCC	4 cut(s)	303, 341, 359, 610
ApaLI	GTGCAC	1 cut(s)	204
ApeKI	GCWGC	6 cut(s)	684, 920, 1184, 1825, 2413, 2630
ApoI	RAATTY	8 cut(s)	60, 659, 1086, 1157, 1301, 1855, 2212, 2653
AseI	ATTAAT	2 cut(s)	399, 798
Asp700I	GAANNNNTTC	2 cut(s)	60, 2736
AspA2I	CCTAGG	1 cut(s)	1916
AspLEI	GCGC	4 cut(s)	258, 1259, 1621, 2340
AspS9I	GGNCC	3 cut(s)	734, 1877, 2711
AsuC2I	CCSGG	2 cut(s)	2170, 2729
AsuHPI	GGTGA	8 cut(s)	110, 758, 1404, 1715, 1941, 2039, 2238, 2267
AsuII	TTCGAA	1 cut(s)	790
AvaI	CYCGRG	1 cut(s)	430
AvaII	GGWCC	3 cut(s)	734, 1877, 2711
AvrII	CCTAGG	1 cut(s)	1916
BaeGI	GKGCMC	4 cut(s)	147, 208, 354, 2750
BalI	TGGCCA	1 cut(s)	343
BanI	GGYRCC	3 cut(s)	142, 1256, 2747
BanII	GRGCYC	2 cut(s)	537, 2819
BauI	CACGAG	1 cut(s)	1701
BbsI	GAAGAC	1 cut(s)	2036
Bbv12I	GWGCWC	4 cut(s)	208, 409, 768, 943
BbvI	GCAGC	6 cut(s)	696, 907, 1171, 1837, 2400, 2617
BciT130I	CCWGG	8 cut(s)	377, 1251, 1365, 1388, 1908, 2051, 2205, 2769
BciVI	GTATCC	2 cut(s)	499, 1337
BclI	TGATCA	2 cut(s)	115, 715
BcnI	CCSGG	2 cut(s)	2170, 2729
BcoDI	GTCTC	5 cut(s)	43, 73, 460, 2031, 2718
BfaI	CTAG	6 cut(s)	456, 774, 1917, 2040, 2061, 2851
BfmI	CTRYAG	2 cut(s)	944, 1500
BfoI	RGCGCY	1 cut(s)	1260
BfuI	GTATCC	2 cut(s)	499, 1337
BglI	GCCNNNNNGGC	3 cut(s)	302, 358, 961
BglII	AGATCT	1 cut(s)	2774
BisI	GCNGC	8 cut(s)	685, 688, 921, 1176, 1185, 1826, 2414, 2631
BlnI	CCTAGG	1 cut(s)	1916
BlpI	GCTNAGC	3 cut(s)	269, 408, 1937
BlsI	GCNGC	8 cut(s)	686, 689, 922, 1177, 1186, 1827, 2415, 2632
Bme18I	GGWCC	3 cut(s)	734, 1877, 2711
BmeT110I	CYCGRG	1 cut(s)	430
BmgBI	CACGTC	1 cut(s)	349
BmgT120I	GGNCC	3 cut(s)	734, 1877, 2711
BmiI	GGNNCC	7 cut(s)	144, 1128, 1258, 1282, 2733, 2749, 2816
BmrI	ACTGGG	2 cut(s)	2073, 2083
BmsI	GCATC	8 cut(s)	889, 1147, 1763, 1837, 1893, 2104, 2217, 2400
BmuI	ACTGGG	2 cut(s)	2073, 2083
BpiI	GAAGAC	1 cut(s)	2036
BplI	GAGNNNNNCTC	2 cut(s)	1684, 1716
BpmI	CTGGAG	1 cut(s)	2742
Bpu1102I	GCTNAGC	3 cut(s)	269, 408, 1937
Bpu14I	TTCGAA	1 cut(s)	790
BpuEI	CTTGAG	1 cut(s)	1058
BpuMI	CCSGG	2 cut(s)	2170, 2729
BsaAI	YACGTR	1 cut(s)	2348
BsaBI	GATNNNNATC	1 cut(s)	672
BsaHI	GRCGYC	1 cut(s)	1257
BsaI	GGTCTC	1 cut(s)	2718
BsaJI	CCNNGG	7 cut(s)	996, 1027, 1250, 1387, 1916, 2050, 2204
Bsc4I	CCNNNNNNNGG	9 cut(s)	152, 186, 376, 526, 743, 1252, 1672, 1848, 2720
Bse1I	ACTGG	5 cut(s)	1564, 1657, 2079, 2089, 2784
Bse3DI	GCAATG	3 cut(s)	811, 1663, 2497
Bse8I	GATNNNNATC	1 cut(s)	672
BseBI	CCWGG	8 cut(s)	377, 1251, 1365, 1388, 1908, 2051, 2205, 2769
BseDI	CCNNGG	7 cut(s)	996, 1027, 1250, 1387, 1916, 2050, 2204
BseJI	GATNNNNATC	1 cut(s)	672
BseLI	CCNNNNNNNGG	9 cut(s)	152, 186, 376, 526, 743, 1252, 1672, 1848, 2720
BseMI	GCAATG	3 cut(s)	811, 1663, 2497
BseMII	CTCAG	7 cut(s)	66, 422, 950, 1442, 1590, 1928, 2163
BseNI	ACTGG	5 cut(s)	1564, 1657, 2079, 2089, 2784
BseRI	GAGGAG	2 cut(s)	297, 1758
BseSI	GKGCMC	4 cut(s)	147, 208, 354, 2750
BseXI	GCAGC	6 cut(s)	696, 907, 1171, 1837, 2400, 2617
BseYI	CCCAGC	2 cut(s)	248, 1775
Bsh1236I	CGCG	1 cut(s)	1785
BshFI	GGCC	4 cut(s)	305, 343, 361, 612
BshNI	GGYRCC	3 cut(s)	142, 1256, 2747
BsiHKAI	GWGCWC	4 cut(s)	208, 409, 768, 943
BsiHKCI	CYCGRG	1 cut(s)	430
BsiSI	CCGG	2 cut(s)	2170, 2729
BslFI	GGGAC	2 cut(s)	1824, 2070
BslI	CCNNNNNNNGG	9 cut(s)	152, 186, 376, 526, 743, 1252, 1672, 1848, 2720
BsmAI	GTCTC	5 cut(s)	43, 73, 460, 2031, 2718
BsmFI	GGGAC	2 cut(s)	1824, 2070
BsmI	GAATGC	4 cut(s)	1588, 1717, 1777, 2552
BsnI	GGCC	4 cut(s)	305, 343, 361, 612
Bso31I	GGTCTC	1 cut(s)	2718
BsoBI	CYCGRG	1 cut(s)	430
Bsp119I	TTCGAA	1 cut(s)	790
Bsp1286I	GDGCHC	9 cut(s)	147, 208, 354, 409, 537, 768, 943, 2750, 2819
Bsp1407I	TGTACA	1 cut(s)	637
Bsp1720I	GCTNAGC	3 cut(s)	269, 408, 1937
BspACI	CCGC	8 cut(s)	687, 690, 1175, 1586, 1644, 1785, 1941, 1957
BspANI	GGCC	4 cut(s)	305, 343, 361, 612
BspCNI	CTCAG	7 cut(s)	67, 421, 951, 1443, 1591, 1929, 2162
BspFNI	CGCG	1 cut(s)	1785
BspHI	TCATGA	1 cut(s)	1606
BspLI	GGNNCC	7 cut(s)	144, 1128, 1258, 1282, 2733, 2749, 2816
BspMAI	CTGCAG	1 cut(s)	948
BspPI	GGATC	8 cut(s)	27, 161, 837, 1102, 1111, 1978, 2185, 2516
BspQI	GCTCTTC	3 cut(s)	525, 1194, 2185
BspT104I	TTCGAA	1 cut(s)	790
BspT107I	GGYRCC	3 cut(s)	142, 1256, 2747
BspTNI	GGTCTC	1 cut(s)	2718
BsrBI	CCGCTC	2 cut(s)	1175, 1941
BsrDI	GCAATG	3 cut(s)	811, 1663, 2497
BsrGI	TGTACA	1 cut(s)	637
BsrI	ACTGG	5 cut(s)	1564, 1657, 2079, 2089, 2784
BssECI	CCNNGG	7 cut(s)	996, 1027, 1250, 1387, 1916, 2050, 2204
BssNAI	GTATAC	2 cut(s)	1045, 2400
BssNI	GRCGYC	1 cut(s)	1257
BssSI	CACGAG	1 cut(s)	1701
BssT1I	CCWWGG	3 cut(s)	996, 1027, 1916
Bst1107I	GTATAC	2 cut(s)	1045, 2400
Bst2BI	CACGAG	1 cut(s)	1701
Bst2UI	CCWGG	8 cut(s)	377, 1251, 1365, 1388, 1908, 2051, 2205, 2769
Bst4CI	ACNGT	8 cut(s)	142, 394, 511, 1613, 2025, 2279, 2319, 2585
Bst6I	CTCTTC	6 cut(s)	46, 525, 1194, 2185, 2702, 2827
BstACI	GRCGYC	1 cut(s)	1257
BstAPI	GCANNNNNTGC	2 cut(s)	1184, 2603
BstAUI	TGTACA	1 cut(s)	637
BstBAI	YACGTR	1 cut(s)	2348
BstBI	TTCGAA	1 cut(s)	790
BstC8I	GCNNGC	5 cut(s)	764, 874, 878, 1243, 2418
BstEII	GGTNACC	2 cut(s)	1559, 1721
BstENI	CCTNNNNNAGG	1 cut(s)	184
BstFNI	CGCG	1 cut(s)	1785
BstH2I	RGCGCY	1 cut(s)	1260
BstHHI	GCGC	4 cut(s)	258, 1259, 1621, 2340
BstMAI	GTCTC	5 cut(s)	43, 73, 460, 2031, 2718
BstNI	CCWGG	8 cut(s)	377, 1251, 1365, 1388, 1908, 2051, 2205, 2769
BstNSI	RCATGY	4 cut(s)	163, 644, 2012, 2200
BstPI	GGTNACC	2 cut(s)	1559, 1721
BstSFI	CTRYAG	2 cut(s)	944, 1500
BstSLI	GKGCMC	4 cut(s)	147, 208, 354, 2750
BstUI	CGCG	1 cut(s)	1785
BstV1I	GCAGC	6 cut(s)	696, 907, 1171, 1837, 2400, 2617
BstV2I	GAAGAC	1 cut(s)	2036
BstX2I	RGATCY	5 cut(s)	829, 1094, 1116, 2190, 2774
BstXI	CCANNNNNNTGG	3 cut(s)	339, 1967, 2708
BstYI	RGATCY	5 cut(s)	829, 1094, 1116, 2190, 2774
BstZ17I	GTATAC	2 cut(s)	1045, 2400
BsuI	GTATCC	2 cut(s)	499, 1337
BsuRI	GGCC	4 cut(s)	305, 343, 361, 612
BtgZI	GCGATG	1 cut(s)	1874
BtrI	CACGTC	1 cut(s)	349
BtsI	GCAGTG	1 cut(s)	941
BtsIMutI	CAGTG	7 cut(s)	219, 941, 956, 1571, 2369, 2590, 2791
Cac8I	GCNNGC	5 cut(s)	764, 874, 878, 1243, 2418
CaiI	CAGNNNCTG	2 cut(s)	100, 1184
CciI	TCATGA	1 cut(s)	1606
CfoI	GCGC	4 cut(s)	258, 1259, 1621, 2340
Cfr13I	GGNCC	3 cut(s)	734, 1877, 2711
Csp6I	GTAC	3 cut(s)	638, 1470, 1571
CspCI	CAANNNNNGTGG	2 cut(s)	865, 900
CviQI	GTAC	3 cut(s)	638, 1470, 1571
DinI	GGCGCC	1 cut(s)	1258
DraIII	CACNNNGTG	2 cut(s)	124, 1540
EaeI	YGGCCR	1 cut(s)	341
Eam1104I	CTCTTC	6 cut(s)	46, 525, 1194, 2185, 2702, 2827
EarI	CTCTTC	6 cut(s)	46, 525, 1194, 2185, 2702, 2827
EciI	GGCGGA	1 cut(s)	1946
Eco130I	CCWWGG	3 cut(s)	996, 1027, 1916
Eco147I	AGGCCT	1 cut(s)	305
Eco24I	GRGCYC	2 cut(s)	537, 2819
Eco31I	GGTCTC	1 cut(s)	2718
Eco32I	GATATC	1 cut(s)	853
Eco47I	GGWCC	3 cut(s)	734, 1877, 2711
Eco88I	CYCGRG	1 cut(s)	430
Eco91I	GGTNACC	2 cut(s)	1559, 1721
EcoNI	CCTNNNNNAGG	1 cut(s)	184
EcoO65I	GGTNACC	2 cut(s)	1559, 1721
EcoRI	GAATTC	3 cut(s)	1855, 2212, 2653
EcoRII	CCWGG	8 cut(s)	375, 1249, 1363, 1386, 1906, 2049, 2203, 2767
EcoRV	GATATC	1 cut(s)	853
EcoT14I	CCWWGG	3 cut(s)	996, 1027, 1916
EcoT22I	ATGCAT	3 cut(s)	1198, 1426, 2014
EcoT38I	GRGCYC	2 cut(s)	537, 2819
EgeI	GGCGCC	1 cut(s)	1258
EheI	GGCGCC	1 cut(s)	1258
ErhI	CCWWGG	3 cut(s)	996, 1027, 1916
FalI	AAGNNNNNCTT	6 cut(s)	1020, 1052, 1173, 1205, 2619, 2651
FaqI	GGGAC	2 cut(s)	1824, 2070
FauNDI	CATATG	2 cut(s)	1932, 2608
FbaI	TGATCA	2 cut(s)	115, 715
FblI	GTMKAC	2 cut(s)	1044, 2399
Fnu4HI	GCNGC	8 cut(s)	685, 688, 921, 1176, 1185, 1826, 2414, 2631
FriOI	GRGCYC	2 cut(s)	537, 2819
Fsp4HI	GCNGC	8 cut(s)	685, 688, 921, 1176, 1185, 1826, 2414, 2631
FspBI	CTAG	6 cut(s)	456, 774, 1917, 2040, 2061, 2851
GlaI	GCGC	4 cut(s)	257, 1258, 1620, 2339
GluI	GCNGC	8 cut(s)	685, 688, 921, 1176, 1185, 1826, 2414, 2631
GsaI	CCCAGC	2 cut(s)	252, 1779
GsuI	CTGGAG	1 cut(s)	2742
HaeII	RGCGCY	1 cut(s)	1260
HaeIII	GGCC	4 cut(s)	305, 343, 361, 612
HapII	CCGG	2 cut(s)	2170, 2729
HhaI	GCGC	4 cut(s)	258, 1259, 1621, 2340
Hin1I	GRCGYC	1 cut(s)	1257
Hin6I	GCGC	4 cut(s)	256, 1257, 1619, 2338
HinP1I	GCGC	4 cut(s)	256, 1257, 1619, 2338
HincII	GTYRAC	2 cut(s)	1024, 1987
HindII	GTYRAC	2 cut(s)	1024, 1987
HindIII	AAGCTT	3 cut(s)	971, 1232, 2659
HinfI	GANTC	4 cut(s)	542, 1055, 1379, 1526
HpaI	GTTAAC	2 cut(s)	1024, 1987
HpaII	CCGG	2 cut(s)	2170, 2729
HphI	GGTGA	8 cut(s)	110, 758, 1404, 1715, 1941, 2039, 2238, 2267
Hpy166II	GTNNAC	8 cut(s)	206, 737, 749, 1024, 1045, 1987, 2246, 2400
Hpy8I	GTNNAC	8 cut(s)	206, 737, 749, 1024, 1045, 1987, 2246, 2400
HpyCH4III	ACNGT	8 cut(s)	142, 394, 511, 1613, 2025, 2279, 2319, 2585
HpyCH4IV	ACGT	3 cut(s)	348, 2257, 2347
HpySE526I	ACGT	3 cut(s)	348, 2257, 2347
Hsp92I	GRCGYC	1 cut(s)	1257
HspAI	GCGC	4 cut(s)	256, 1257, 1619, 2338
KasI	GGCGCC	1 cut(s)	1256
Ksp22I	TGATCA	2 cut(s)	115, 715
KspAI	GTTAAC	2 cut(s)	1024, 1987
LguI	GCTCTTC	3 cut(s)	525, 1194, 2185
LmnI	GCTCC	5 cut(s)	253, 1132, 1291, 1745, 2814
Lsp1109I	GCAGC	6 cut(s)	696, 907, 1171, 1837, 2400, 2617
LweI	GCATC	8 cut(s)	889, 1147, 1763, 1837, 1893, 2104, 2217, 2400
MaeI	CTAG	6 cut(s)	456, 774, 1917, 2040, 2061, 2851
MaeII	ACGT	3 cut(s)	348, 2257, 2347
MaeIII	GTNAC	4 cut(s)	174, 1559, 1648, 1721
MbiI	CCGCTC	2 cut(s)	1175, 1941
MfeI	CAATTG	3 cut(s)	198, 1639, 2469
MflI	RGATCY	5 cut(s)	829, 1094, 1116, 2190, 2774
MhlI	GDGCHC	9 cut(s)	147, 208, 354, 409, 537, 768, 943, 2750, 2819
MlsI	TGGCCA	1 cut(s)	343
MluNI	TGGCCA	1 cut(s)	343
Mly113I	GGCGCC	1 cut(s)	1257
MmeI	TCCRAC	7 cut(s)	67, 361, 1350, 1554, 1659, 1836, 1948
Mox20I	TGGCCA	1 cut(s)	343
Mph1103I	ATGCAT	3 cut(s)	1198, 1426, 2014
MroXI	GAANNNNTTC	2 cut(s)	60, 2736
MscI	TGGCCA	1 cut(s)	343
MseI	TTAA	7 cut(s)	399, 798, 1023, 1305, 1551, 1986, 2663
MslI	CAYNNNNRTG	8 cut(s)	51, 654, 756, 1701, 1794, 2372, 2513, 2706
Msp20I	TGGCCA	1 cut(s)	343
MspA1I	CMGCKG	2 cut(s)	152, 687
MspI	CCGG	2 cut(s)	2170, 2729
MunI	CAATTG	3 cut(s)	198, 1639, 2469
Mva1269I	GAATGC	4 cut(s)	1588, 1717, 1777, 2552
MvaI	CCWGG	8 cut(s)	377, 1251, 1365, 1388, 1908, 2051, 2205, 2769
MvnI	CGCG	1 cut(s)	1785
NarI	GGCGCC	1 cut(s)	1257
NciI	CCSGG	2 cut(s)	2170, 2729
NdeI	CATATG	2 cut(s)	1932, 2608
NlaIV	GGNNCC	7 cut(s)	144, 1128, 1258, 1282, 2733, 2749, 2816
NmuCI	GTSAC	2 cut(s)	1648, 1721
NsiI	ATGCAT	3 cut(s)	1198, 1426, 2014
NspI	RCATGY	4 cut(s)	163, 644, 2012, 2200
NspV	TTCGAA	1 cut(s)	790
OliI	CACNNNNGTG	1 cut(s)	1701
PaeR7I	CTCGAG	1 cut(s)	430
PagI	TCATGA	1 cut(s)	1606
PceI	AGGCCT	1 cut(s)	305
PciI	ACATGT	1 cut(s)	2196
PciSI	GCTCTTC	3 cut(s)	525, 1194, 2185
PctI	GAATGC	4 cut(s)	1588, 1717, 1777, 2552
PdmI	GAANNNNTTC	2 cut(s)	60, 2736
PfeI	GAWTC	4 cut(s)	542, 1055, 1379, 1526
PflMI	CCANNNNNTGG	3 cut(s)	376, 1848, 2720
PfoI	TCCNGGA	1 cut(s)	1363
PkrI	GCNGC	8 cut(s)	686, 689, 922, 1177, 1186, 1827, 2415, 2632
PluTI	GGCGCC	1 cut(s)	1260
Ppu21I	YACGTR	1 cut(s)	2348
PscI	ACATGT	1 cut(s)	2196
PshBI	ATTAAT	2 cut(s)	399, 798
Psp6I	CCWGG	8 cut(s)	375, 1249, 1363, 1386, 1906, 2049, 2203, 2767
PspEI	GGTNACC	2 cut(s)	1559, 1721
PspFI	CCCAGC	2 cut(s)	248, 1775
PspGI	CCWGG	8 cut(s)	375, 1249, 1363, 1386, 1906, 2049, 2203, 2767
PspN4I	GGNNCC	7 cut(s)	144, 1128, 1258, 1282, 2733, 2749, 2816
PspPI	GGNCC	3 cut(s)	734, 1877, 2711
PstI	CTGCAG	1 cut(s)	948
PstNI	CAGNNNCTG	2 cut(s)	100, 1184
PsuI	RGATCY	5 cut(s)	829, 1094, 1116, 2190, 2774
PvuII	CAGCTG	1 cut(s)	152
RsaI	GTAC	3 cut(s)	639, 1471, 1572
RsaNI	GTAC	3 cut(s)	638, 1470, 1571
RseI	CAYNNNNRTG	8 cut(s)	51, 654, 756, 1701, 1794, 2372, 2513, 2706
SapI	GCTCTTC	3 cut(s)	525, 1194, 2185
SaqAI	TTAA	7 cut(s)	399, 798, 1023, 1305, 1551, 1986, 2663
SatI	GCNGC	8 cut(s)	685, 688, 921, 1176, 1185, 1826, 2414, 2631
Sau96I	GGNCC	3 cut(s)	734, 1877, 2711
SduI	GDGCHC	9 cut(s)	147, 208, 354, 409, 537, 768, 943, 2750, 2819
SfaNI	GCATC	8 cut(s)	889, 1147, 1763, 1837, 1893, 2104, 2217, 2400
SfcI	CTRYAG	2 cut(s)	944, 1500
SfoI	GGCGCC	1 cut(s)	1258
Sfr274I	CTCGAG	1 cut(s)	430
SfuI	TTCGAA	1 cut(s)	790
SinI	GGWCC	3 cut(s)	734, 1877, 2711
SlaI	CTCGAG	1 cut(s)	430
SmiMI	CAYNNNNRTG	8 cut(s)	51, 654, 756, 1701, 1794, 2372, 2513, 2706
SmlI	CTYRAG	2 cut(s)	430, 1037
SmoI	CTYRAG	2 cut(s)	430, 1037
SseBI	AGGCCT	1 cut(s)	305
SsiI	CCGC	8 cut(s)	687, 690, 1175, 1586, 1644, 1785, 1941, 1957
SspDI	GGCGCC	1 cut(s)	1256
SspI	AATATT	2 cut(s)	796, 1309
SspMI	CTAG	6 cut(s)	456, 774, 1917, 2040, 2061, 2851
StuI	AGGCCT	1 cut(s)	305
StyI	CCWWGG	3 cut(s)	996, 1027, 1916
TaaI	ACNGT	8 cut(s)	142, 394, 511, 1613, 2025, 2279, 2319, 2585
TaiI	ACGT	3 cut(s)	351, 2260, 2350
TaqI	TCGA	7 cut(s)	431, 790, 1408, 2225, 2440, 2758, 2779
TaqII	GACCGA	1 cut(s)	1262
TatI	WGTACW	1 cut(s)	637
TauI	GCSGC	2 cut(s)	690, 1178
TfiI	GAWTC	4 cut(s)	542, 1055, 1379, 1526
Tru1I	TTAA	7 cut(s)	399, 798, 1023, 1305, 1551, 1986, 2663
Tru9I	TTAA	7 cut(s)	399, 798, 1023, 1305, 1551, 1986, 2663
TscAI	CASTG	7 cut(s)	219, 948, 963, 1571, 2376, 2590, 2791
TseFI	GTSAC	2 cut(s)	1648, 1721
TseI	GCWGC	6 cut(s)	684, 920, 1184, 1825, 2413, 2630
Tsp45I	GTSAC	2 cut(s)	1648, 1721
TspGWI	ACGGA	2 cut(s)	1109, 1755
TspRI	CASTG	7 cut(s)	219, 948, 963, 1571, 2376, 2590, 2791
Van91I	CCANNNNNTGG	3 cut(s)	376, 1848, 2720
VneI	GTGCAC	1 cut(s)	204
VpaK11BI	GGWCC	3 cut(s)	734, 1877, 2711
VspI	ATTAAT	2 cut(s)	399, 798
XagI	CCTNNNNNAGG	1 cut(s)	184
XapI	RAATTY	8 cut(s)	60, 659, 1086, 1157, 1301, 1855, 2212, 2653
XbaI	TCTAGA	1 cut(s)	773
XceI	RCATGY	4 cut(s)	163, 644, 2012, 2200
XcmI	CCANNNNNNNNNTGG	3 cut(s)	377, 1426, 2201
XhoI	CTCGAG	1 cut(s)	430
XmaJI	CCTAGG	1 cut(s)	1916
XmiI	GTMKAC	2 cut(s)	1044, 2399
XmnI	GAANNNNTTC	2 cut(s)	60, 2736
XspI	CTAG	6 cut(s)	456, 774, 1917, 2040, 2061, 2851
Zsp2I	ATGCAT	3 cut(s)	1198, 1426, 2014

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.