Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003328

Physical Location & Seq

Genomic Coordinates Forward (+)

61276599 .. 61283313

Gene Structure 6715 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004666

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2850 bp

ATGCCATTTGAAATAATGGATCAAAGGGGTGTATCTGTCTCTTCCCACTTCTTTGAAGAAATTCCTTTTCCTTCCGAGAGACAAGTTGGATTTCAGAAGCTGAAAACCATGCCTGATCACCAAGTGGGAGTGGATAGAACAGTGCCGACAGCTGGCAGCATATTCGATCCTTCATTACCCCCAAAAAGGTTTTTACCAGTTGGGGCACAATCAGTGGATTACTTTGATATGCCACAATCCAATCTGGCTGGGGAGCGCACAGAAAGGCTAAGCATTAGTGGAGGAGTTGCCAATACATCTAAGGCCTCGTGGAAACCTATGAATCATCATCCAAAGTTGTGGTCAGACTTGCCCACACGGCCAACATCCCATAGCTTGGTTGGAAGCAAAACTGCTATTAATGGTGCTCAGCATGAAAGCAGTCTGTTCTCAAGCTCATTGTCTGAAATTTTTACTAGAAAATTGAGATTGCTAAAGGGTGATTTTGTATCTCATCAATCTACAAATACTGTTGCTTCCCAACATGAGGAAGAGCCCTTTGAATCGCTTGAAGAAATGGAAGCACAAACCATTGGAAATCTCCTTCCTGATGAAAATGATTTGTTTTCTGGCATGATAGATGGTCCGGGTAAAATTGTGCATGGTAGTAATGGGGACGAATTGGAAGATTTTGATCTTTTTAGCAGTGGCGGCGGGATGGAATTAGAAGGAGATGATCAAGGGGGTGGTAATTTTTCACTTGTGGGTGAACACCCCTATGGCGAGCACCCTTCTAGAACACTTTTTGTTCGAAATATTAATAGCAATGTTGAAGATTTGGAATTGAAGGATCTTTTTGAGCAATATGGAGATATCCGAACACTTTACACAGCCTGCAAGCATCGTGGGTTTGTTATGATTTCTTATTATGATATAAGGGCTGCCCAAAAAGCGATAAGAGCACTACAGAGTAAGCCACTGAGGCGTAGGAAGCTTGACATACACTATTCGATACCCAAGGACAACCCTTCTGATAAAGATGTTAACCAAGGAACACTTGAGGTATACAATGTTGATTCTTCTGTTTCTGATGATGAGCTTACTAAACTTTTCGAATCTTATGGGGAAATGAAAGAGATCCGCGAGGCTCCAAACAAGAGTCATAACAAGTTGATAGAATTTTATGATGTTAGAGCTGCAGAAGCTGCTCTTCATGCATTGAATACGAGTGAGATTGGTGGGAAGCAGATCAAGCTTGAACGCAGCCATCCAGGGGGTGCCAGAATGGGTTTCGGTCAAGGTTCCAAGCAGGAGCAAGATGAATTTAATATTTGTCATAGTCCATCCGACAACTTATCAGCAGGATGCAAGGCAACCCTTCATCCTGGAATGGCTAATGAATCTAACCTGGGATTACATTCTTCAATTCGATCACCTTCCAATGCATTTATGGGAAATGCTTTAGCGCATCTGAGTTCAAGTGTTCCGCGTACCTTGCCCTCTCCGATGAGAGTGGTGTCTGCGGACAAAAACTTTTGCCTTCCTGATTCCAATCACTCTCTGAATGAAATTAAGTTTGGTAACCAGTGCATTCCCAATTTCCATCCGCATTCCCTCCCTGAGTATCATGACAGTTTAGCACATGGTATCACATCCAACTCCAGTGGAGTGACTGGCAATGTGGGCCTTAGAATGACAGAAGGAACGGACAGGAGGCACATTCGTGAAATGAATGCAAATGGGCACCTGATGGAACTGAACGGAGGAGGAGCTTTTGCATCTTCTGGAAATGGGAGTGCTGGGGTTCGCGGACATCATTATGTTTCCAATTCTTATCAGCAGCATCCTTCAAGTCCCATGATGTGGCAGAATTCACCATCATTTATCAATGGTCCCCATGCTCATCGCTTTCCACAAATGCCTGGCTTCCCCAGAACACCTCCTCACATGCTGAATGGGACATCACCTGTCCGCCACCATGTTGGATCAGCACCAGCAGTTAACCCTTCCCTATGGGAAAGACATGCATTTTCAGGACAGTCTCCTGACACTTCTAGTCTTCACCTGGGATCTCCTAGCTTCGCCTGTTTTCCCAGTAGTCCCCAGTTGCATCCTATGGAAGTTCCGTCACGCAACATCTTTTCTCTTGTTGGTGGAAATTGCGCTGACATGAATACAAGTACCCGGCAACGCTCTTCGCAGGAGATCTGCCACATGTTTCCTGGGAGGAATTCAATGTTGTCGATGCCTAGCTCTTTTGGTACACCAAATGAACGTGTCAGAAATCTATCTCACCGTAGAAGTGAGGCAAACTCCCATAATGCTGATAGGAAACAATATGAACTTGATATTGAGCGCATATTGCGTGGGGATGACAACCGAACCACACTGATGATAAAGAACATTCCCAACAAGTATACTTCAAAGATGCTGCTTGCAGTAATTGATGAGAACTGTCGAGGAATATATGACTTTATTTATTTGCCAATTGACTTCAAGAACAAATGCAATGTGGGATATGCATTCATCAACATGATTGATCCTCAACAGATTGTTCCATTCTATAAGGCATTCAATGGCAAAAAATGGGAGAAGTTCAACAGTGAAAAGGTTGCAACACTTGCATATGCTCGTATTCAGGGAAAAGCTGCTCTTATTGCCCATTTCCAGAATTCAAGCTTAATGAATGAGGACAAACGGTGTCGCCCTATACTCTTCCACACAGATGGACCAAATGCTGGGGACCCGGAACCCTTTCCAATGGGCACCCACATCCGATCAAGACCAGGAAGATCTCGAACCAGTGGCTATGAGGAAAGCCATAACCAATGGAGCCCTTCTTCATCTGCAAATGGAGAGGAAAGTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0008150 GO:0010564 GO:0010638 GO:0033043 GO:0040008 GO:0040020 GO:0045787 GO:0045836 GO:0045927 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051445 GO:0051446 GO:0051726 GO:0051783 GO:0051785 GO:0065007 GO:0090068 GO:0097159 GO:1901363 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 RRM_2

Protein Analysis

950

Amino Acids

105.11

Weight (kDa)

6.45

Isoelectric Point (pI)

53.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	261 - 325	2.9e-11	RNA recognition motif
RRM_1	PF00076	348 - 411	1.1e-07	RNA recognition motif
RRM_2	PF04059	787 - 883	7e-54	RNA recognition motif 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07290 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960
fragaria_vesca	FvH4_5g09460
malus_domestica	MD06G1131000.v1.1 MD14G1147600.v1.1
prunus_persica	Prupe.5G142200_v2.0.a1 Prupe.5G142200_v2.0.a1 Prupe.5G142200_v2.0.a1 Prupe.5G142200_v2.0.a1 Prupe.5G142200_v2.0.a1
pyrus_communis	pycom06g12260 pycom14g12230
rosa_chinensis	RchiOBHm_Chr7g0188731
rosa_laevigata	RLG00000004666
rosa_multiflora	Rmu_sc0003854.1_g000006
rosa_roxburghii	Rroxscaffold_3G00266090
rosa_rugosa	Rorug06G0493200.1 Rorug06G0493300.1 Rorug06G0493400 Rorug06G0493400 Rorug06G0493500
rosa_samantha	Rh7AG098000 Rh7BG099400 Rh7CG101200 Rh7DG099800
rosa_wichuraiana	Rw7G008440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	1256, 1722, 2744
AccB7I	CCANNNNNTGG	3 cut(s)	376, 1842, 2717
AccI	GTMKAC	2 cut(s)	1044, 2396
AccII	CGCG	3 cut(s)	1122, 1468, 1788
AciI	CCGC	8 cut(s)	690, 693, 1120, 1466, 1502, 1586, 1788, 1951
AclWI	GGATC	7 cut(s)	27, 161, 837, 1111, 1972, 2056, 2513
AcoI	YGGCCR	1 cut(s)	359
AcsI	RAATTY	7 cut(s)	60, 447, 1157, 1301, 1849, 2209, 2650
AdeI	CACNNNGTG	1 cut(s)	124
AfaI	GTAC	3 cut(s)	1471, 2161, 2242
AfiI	CCNNNNNNNGG	7 cut(s)	152, 186, 376, 526, 1252, 1842, 2717
AflIII	ACRYGT	2 cut(s)	2193, 2254
AjnI	CCWGG	7 cut(s)	1249, 1363, 1386, 1900, 2043, 2200, 2764
AjuI	GAANNNNNNNTTGG	2 cut(s)	1539, 1571
AleI	CACNNNNGTG	1 cut(s)	1701
Alw21I	GWGCWC	3 cut(s)	409, 768, 943
Alw26I	GTCTC	3 cut(s)	43, 73, 2025
AlwI	GGATC	7 cut(s)	27, 161, 837, 1111, 1972, 2056, 2513
AlwNI	CAGNNNCTG	2 cut(s)	100, 1184
AoxI	GGCC	3 cut(s)	303, 359, 1663
ApeKI	GCWGC	8 cut(s)	156, 920, 1175, 1184, 1242, 1819, 2410, 2627
ApoI	RAATTY	7 cut(s)	60, 447, 1157, 1301, 1849, 2209, 2650
ArsI	GACNNNNNNTTYG	2 cut(s)	326, 358
AseI	ATTAAT	2 cut(s)	399, 798
Asp700I	GAANNNNTTC	2 cut(s)	60, 2733
AspLEI	GCGC	4 cut(s)	258, 1447, 2144, 2337
AspS9I	GGNCC	5 cut(s)	623, 1663, 1871, 2708, 2722
AsuC2I	CCSGG	3 cut(s)	627, 2164, 2726
AsuHPI	GGTGA	8 cut(s)	110, 491, 758, 1404, 1845, 1935, 2033, 2264
AsuII	TTCGAA	2 cut(s)	790, 1092
AvaII	GGWCC	4 cut(s)	623, 1871, 2708, 2722
BaeGI	GKGCMC	3 cut(s)	208, 1725, 2747
BanI	GGYRCC	3 cut(s)	1256, 1722, 2744
BanII	GRGCYC	2 cut(s)	537, 2816
BauI	CACGAG	1 cut(s)	307
BbsI	GAAGAC	1 cut(s)	2030
Bbv12I	GWGCWC	3 cut(s)	409, 768, 943
BbvI	GCAGC	8 cut(s)	168, 907, 1162, 1171, 1254, 1831, 2397, 2614
BccI	CCATC	8 cut(s)	614, 691, 1254, 1330, 1590, 1723, 1864, 2699
BceAI	ACGGC	1 cut(s)	374
BcgI	CGANNNNNNTGC	2 cut(s)	145, 179
BciT130I	CCWGG	7 cut(s)	1251, 1365, 1388, 1902, 2045, 2202, 2766
BclI	TGATCA	2 cut(s)	115, 715
BcnI	CCSGG	3 cut(s)	627, 2164, 2726
BcoDI	GTCTC	3 cut(s)	43, 73, 2025
BfaI	CTAG	6 cut(s)	456, 774, 2034, 2055, 2229, 2848
BfmI	CTRYAG	2 cut(s)	944, 1176
BglI	GCCNNNNNGGC	2 cut(s)	358, 961
BglII	AGATCT	2 cut(s)	2184, 2771
BisI	GCNGC	9 cut(s)	157, 691, 921, 1176, 1185, 1243, 1820, 2411, 2628
BlpI	GCTNAGC	2 cut(s)	269, 408
BlsI	GCNGC	9 cut(s)	158, 692, 922, 1177, 1186, 1244, 1821, 2412, 2629
Bme18I	GGWCC	4 cut(s)	623, 1871, 2708, 2722
BmgT120I	GGNCC	5 cut(s)	623, 1663, 1871, 2708, 2722
BmrI	ACTGGG	2 cut(s)	2067, 2077
BmsI	GCATC	8 cut(s)	889, 1334, 1456, 1766, 1831, 2098, 2214, 2397
BmuI	ACTGGG	2 cut(s)	2067, 2077
BpiI	GAAGAC	1 cut(s)	2030
BplI	GAGNNNNNCTC	2 cut(s)	2276, 2308
BpmI	CTGGAG	1 cut(s)	1624
Bpu1102I	GCTNAGC	2 cut(s)	269, 408
Bpu14I	TTCGAA	2 cut(s)	790, 1092
BpuEI	CTTGAG	2 cut(s)	415, 1058
BpuMI	CCSGG	3 cut(s)	627, 2164, 2726
BsaBI	GATNNNNATC	2 cut(s)	672, 1530
BsaJI	CCNNGG	6 cut(s)	996, 1027, 1250, 1387, 2044, 2201
Bsc4I	CCNNNNNNNGG	7 cut(s)	152, 186, 376, 526, 1252, 1842, 2717
Bse1I	ACTGG	7 cut(s)	197, 1564, 1641, 1657, 2073, 2083, 2781
Bse3DI	GCAATG	3 cut(s)	811, 1663, 2494
Bse8I	GATNNNNATC	2 cut(s)	672, 1530
BseBI	CCWGG	7 cut(s)	1251, 1365, 1388, 1902, 2045, 2202, 2766
BseDI	CCNNGG	6 cut(s)	996, 1027, 1250, 1387, 2044, 2201
BseJI	GATNNNNATC	2 cut(s)	672, 1530
BseLI	CCNNNNNNNGG	7 cut(s)	152, 186, 376, 526, 1252, 1842, 2717
BseMI	GCAATG	3 cut(s)	811, 1663, 2494
BseMII	CTCAG	4 cut(s)	422, 950, 1442, 1590
BseNI	ACTGG	7 cut(s)	197, 1564, 1641, 1657, 2073, 2083, 2781
BseRI	GAGGAG	4 cut(s)	297, 1758, 1761, 1911
BseSI	GKGCMC	3 cut(s)	208, 1725, 2747
BseXI	GCAGC	8 cut(s)	168, 907, 1162, 1171, 1254, 1831, 2397, 2614
BseYI	CCCAGC	3 cut(s)	248, 1778, 2717
Bsh1236I	CGCG	3 cut(s)	1122, 1468, 1788
BshFI	GGCC	3 cut(s)	305, 361, 1665
BshNI	GGYRCC	3 cut(s)	1256, 1722, 2744
BsiHKAI	GWGCWC	3 cut(s)	409, 768, 943
BsiSI	CCGG	3 cut(s)	626, 2164, 2726
BslFI	GGGAC	6 cut(s)	668, 1818, 1857, 1951, 2064, 2735
BslI	CCNNNNNNNGG	7 cut(s)	152, 186, 376, 526, 1252, 1842, 2717
BsmAI	GTCTC	3 cut(s)	43, 73, 2025
BsmFI	GGGAC	6 cut(s)	668, 1818, 1857, 1951, 2064, 2735
BsmI	GAATGC	5 cut(s)	1569, 1588, 1717, 2501, 2549
BsnI	GGCC	3 cut(s)	305, 361, 1665
Bsp119I	TTCGAA	2 cut(s)	790, 1092
Bsp1286I	GDGCHC	8 cut(s)	208, 409, 537, 768, 943, 1725, 2747, 2816
Bsp1720I	GCTNAGC	2 cut(s)	269, 408
BspACI	CCGC	8 cut(s)	690, 693, 1120, 1466, 1502, 1586, 1788, 1951
BspANI	GGCC	3 cut(s)	305, 361, 1665
BspCNI	CTCAG	4 cut(s)	421, 951, 1443, 1591
BspFNI	CGCG	3 cut(s)	1122, 1468, 1788
BspHI	TCATGA	1 cut(s)	1606
BspMAI	CTGCAG	1 cut(s)	1180
BspPI	GGATC	7 cut(s)	27, 161, 837, 1111, 1972, 2056, 2513
BspQI	GCTCTTC	3 cut(s)	525, 1194, 2179
BspT104I	TTCGAA	2 cut(s)	790, 1092
BspT107I	GGYRCC	3 cut(s)	1256, 1722, 2744
BsrDI	GCAATG	3 cut(s)	811, 1663, 2494
BsrI	ACTGG	7 cut(s)	197, 1564, 1641, 1657, 2073, 2083, 2781
BssECI	CCNNGG	6 cut(s)	996, 1027, 1250, 1387, 2044, 2201
BssNAI	GTATAC	2 cut(s)	1045, 2397
BssSI	CACGAG	1 cut(s)	307
BssT1I	CCWWGG	2 cut(s)	996, 1027
Bst1107I	GTATAC	2 cut(s)	1045, 2397
Bst2BI	CACGAG	1 cut(s)	307
Bst2UI	CCWGG	7 cut(s)	1251, 1365, 1388, 1902, 2045, 2202, 2766
Bst4CI	ACNGT	8 cut(s)	142, 511, 1613, 2019, 2276, 2435, 2582, 2679
Bst6I	CTCTTC	5 cut(s)	46, 525, 1194, 2179, 2699
BstAPI	GCANNNNNTGC	2 cut(s)	1184, 2600
BstBI	TTCGAA	2 cut(s)	790, 1092
BstC8I	GCNNGC	5 cut(s)	154, 764, 874, 878, 2415
BstDEI	CTNAG	7 cut(s)	269, 300, 408, 959, 1451, 1599, 1667
BstEII	GGTNACC	1 cut(s)	1559
BstFNI	CGCG	3 cut(s)	1122, 1468, 1788
BstHHI	GCGC	4 cut(s)	258, 1447, 2144, 2337
BstMAI	GTCTC	3 cut(s)	43, 73, 2025
BstNI	CCWGG	7 cut(s)	1251, 1365, 1388, 1902, 2045, 2202, 2766
BstNSI	RCATGY	3 cut(s)	1930, 2006, 2197
BstPI	GGTNACC	1 cut(s)	1559
BstSFI	CTRYAG	2 cut(s)	944, 1176
BstSLI	GKGCMC	3 cut(s)	208, 1725, 2747
BstUI	CGCG	3 cut(s)	1122, 1468, 1788
BstV1I	GCAGC	8 cut(s)	168, 907, 1162, 1171, 1254, 1831, 2397, 2614
BstV2I	GAAGAC	1 cut(s)	2030
BstX2I	RGATCY	5 cut(s)	829, 1116, 2048, 2184, 2771
BstXI	CCANNNNNNTGG	3 cut(s)	339, 1961, 2705
BstYI	RGATCY	5 cut(s)	829, 1116, 2048, 2184, 2771
BstZ17I	GTATAC	2 cut(s)	1045, 2397
BsuRI	GGCC	3 cut(s)	305, 361, 1665
BtgZI	GCGATG	1 cut(s)	1868
BtsI	GCAGTG	1 cut(s)	691
BtsIMutI	CAGTG	9 cut(s)	147, 219, 691, 956, 1571, 1648, 2366, 2587, 2788
Cac8I	GCNNGC	5 cut(s)	154, 764, 874, 878, 2415
CaiI	CAGNNNCTG	2 cut(s)	100, 1184
CciI	TCATGA	1 cut(s)	1606
CfoI	GCGC	4 cut(s)	258, 1447, 2144, 2337
Cfr13I	GGNCC	5 cut(s)	623, 1663, 1871, 2708, 2722
Csp6I	GTAC	3 cut(s)	1470, 2160, 2241
CspCI	CAANNNNNGTGG	4 cut(s)	865, 900, 1624, 1659
CviQI	GTAC	3 cut(s)	1470, 2160, 2241
DdeI	CTNAG	7 cut(s)	269, 300, 408, 959, 1451, 1599, 1667
DraIII	CACNNNGTG	1 cut(s)	124
EaeI	YGGCCR	1 cut(s)	359
Eam1104I	CTCTTC	5 cut(s)	46, 525, 1194, 2179, 2699
EarI	CTCTTC	5 cut(s)	46, 525, 1194, 2179, 2699
EciI	GGCGGA	1 cut(s)	1940
Eco130I	CCWWGG	2 cut(s)	996, 1027
Eco147I	AGGCCT	1 cut(s)	305
Eco24I	GRGCYC	2 cut(s)	537, 2816
Eco32I	GATATC	1 cut(s)	853
Eco47I	GGWCC	4 cut(s)	623, 1871, 2708, 2722
Eco91I	GGTNACC	1 cut(s)	1559
EcoO109I	RGGNCCY	1 cut(s)	2722
EcoO65I	GGTNACC	1 cut(s)	1559
EcoRI	GAATTC	3 cut(s)	1849, 2209, 2650
EcoRII	CCWGG	7 cut(s)	1249, 1363, 1386, 1900, 2043, 2200, 2764
EcoRV	GATATC	1 cut(s)	853
EcoT14I	CCWWGG	2 cut(s)	996, 1027
EcoT22I	ATGCAT	4 cut(s)	1198, 1426, 2008, 2503
EcoT38I	GRGCYC	2 cut(s)	537, 2816
ErhI	CCWWGG	2 cut(s)	996, 1027
FalI	AAGNNNNNCTT	6 cut(s)	1020, 1052, 1173, 1205, 2616, 2648
FaqI	GGGAC	6 cut(s)	668, 1818, 1857, 1951, 2064, 2735
FauI	CCCGC	1 cut(s)	686
FauNDI	CATATG	1 cut(s)	2605
FbaI	TGATCA	2 cut(s)	115, 715
FblI	GTMKAC	2 cut(s)	1044, 2396
Fnu4HI	GCNGC	9 cut(s)	157, 691, 921, 1176, 1185, 1243, 1820, 2411, 2628
FriOI	GRGCYC	2 cut(s)	537, 2816
Fsp4HI	GCNGC	9 cut(s)	157, 691, 921, 1176, 1185, 1243, 1820, 2411, 2628
FspBI	CTAG	6 cut(s)	456, 774, 2034, 2055, 2229, 2848
GlaI	GCGC	4 cut(s)	257, 1446, 2143, 2336
GluI	GCNGC	9 cut(s)	157, 691, 921, 1176, 1185, 1243, 1820, 2411, 2628
GsaI	CCCAGC	3 cut(s)	252, 1782, 2721
GsuI	CTGGAG	1 cut(s)	1624
HaeIII	GGCC	3 cut(s)	305, 361, 1665
HapII	CCGG	3 cut(s)	626, 2164, 2726
HhaI	GCGC	4 cut(s)	258, 1447, 2144, 2337
Hin6I	GCGC	4 cut(s)	256, 1445, 2142, 2335
HinP1I	GCGC	4 cut(s)	256, 1445, 2142, 2335
HincII	GTYRAC	2 cut(s)	1024, 1981
HindII	GTYRAC	2 cut(s)	1024, 1981
HindIII	AAGCTT	3 cut(s)	971, 1232, 2656
HinfI	GANTC	7 cut(s)	322, 542, 1055, 1094, 1138, 1379, 1526
HpaI	GTTAAC	2 cut(s)	1024, 1981
HpaII	CCGG	3 cut(s)	626, 2164, 2726
HphI	GGTGA	8 cut(s)	110, 491, 758, 1404, 1845, 1935, 2033, 2264
Hpy166II	GTNNAC	6 cut(s)	749, 1024, 1045, 1981, 2243, 2397
Hpy8I	GTNNAC	6 cut(s)	749, 1024, 1045, 1981, 2243, 2397
HpyCH4III	ACNGT	8 cut(s)	142, 511, 1613, 2019, 2276, 2435, 2582, 2679
HpyCH4IV	ACGT	1 cut(s)	2254
HpyF3I	CTNAG	7 cut(s)	269, 300, 408, 959, 1451, 1599, 1667
HpySE526I	ACGT	1 cut(s)	2254
HspAI	GCGC	4 cut(s)	256, 1445, 2142, 2335
KflI	GGGWCCC	1 cut(s)	2722
Ksp22I	TGATCA	2 cut(s)	115, 715
KspAI	GTTAAC	2 cut(s)	1024, 1981
LguI	GCTCTTC	3 cut(s)	525, 1194, 2179
LmnI	GCTCC	5 cut(s)	253, 1132, 1291, 1748, 2811
Lsp1109I	GCAGC	8 cut(s)	168, 907, 1162, 1171, 1254, 1831, 2397, 2614
LweI	GCATC	8 cut(s)	889, 1334, 1456, 1766, 1831, 2098, 2214, 2397
MaeI	CTAG	6 cut(s)	456, 774, 2034, 2055, 2229, 2848
MaeII	ACGT	1 cut(s)	2254
MaeIII	GTNAC	3 cut(s)	1559, 1648, 2106
MfeI	CAATTG	1 cut(s)	2466
MflI	RGATCY	5 cut(s)	829, 1116, 2048, 2184, 2771
MhlI	GDGCHC	8 cut(s)	208, 409, 537, 768, 943, 1725, 2747, 2816
MlyI	GAGTC	1 cut(s)	1147
MmeI	TCCRAC	5 cut(s)	67, 361, 1350, 1659, 1942
Mph1103I	ATGCAT	4 cut(s)	1198, 1426, 2008, 2503
MroXI	GAANNNNTTC	2 cut(s)	60, 2733
MseI	TTAA	7 cut(s)	399, 798, 1023, 1305, 1551, 1980, 2660
MslI	CAYNNNNRTG	6 cut(s)	756, 1701, 1797, 2369, 2510, 2703
MspA1I	CMGCKG	1 cut(s)	152
MspI	CCGG	3 cut(s)	626, 2164, 2726
MunI	CAATTG	1 cut(s)	2466
Mva1269I	GAATGC	5 cut(s)	1569, 1588, 1717, 2501, 2549
MvaI	CCWGG	7 cut(s)	1251, 1365, 1388, 1902, 2045, 2202, 2766
MvnI	CGCG	3 cut(s)	1122, 1468, 1788
NciI	CCSGG	3 cut(s)	627, 2164, 2726
NdeI	CATATG	1 cut(s)	2605
NmuCI	GTSAC	2 cut(s)	1648, 2106
NsiI	ATGCAT	4 cut(s)	1198, 1426, 2008, 2503
NspI	RCATGY	3 cut(s)	1930, 2006, 2197
NspV	TTCGAA	2 cut(s)	790, 1092
OliI	CACNNNNGTG	1 cut(s)	1701
PagI	TCATGA	1 cut(s)	1606
PceI	AGGCCT	1 cut(s)	305
PciI	ACATGT	1 cut(s)	2193
PciSI	GCTCTTC	3 cut(s)	525, 1194, 2179
PctI	GAATGC	5 cut(s)	1569, 1588, 1717, 2501, 2549
PdmI	GAANNNNTTC	2 cut(s)	60, 2733
PfeI	GAWTC	6 cut(s)	322, 542, 1055, 1094, 1379, 1526
PflMI	CCANNNNNTGG	3 cut(s)	376, 1842, 2717
PfoI	TCCNGGA	1 cut(s)	1363
PkrI	GCNGC	9 cut(s)	158, 692, 922, 1177, 1186, 1244, 1821, 2412, 2629
PleI	GAGTC	1 cut(s)	1146
PpsI	GAGTC	1 cut(s)	1146
PpuMI	RGGWCCY	1 cut(s)	2722
PscI	ACATGT	1 cut(s)	2193
PshBI	ATTAAT	2 cut(s)	399, 798
Psp5II	RGGWCCY	1 cut(s)	2722
Psp6I	CCWGG	7 cut(s)	1249, 1363, 1386, 1900, 2043, 2200, 2764
PspEI	GGTNACC	1 cut(s)	1559
PspFI	CCCAGC	3 cut(s)	248, 1778, 2717
PspGI	CCWGG	7 cut(s)	1249, 1363, 1386, 1900, 2043, 2200, 2764
PspPI	GGNCC	5 cut(s)	623, 1663, 1871, 2708, 2722
PspPPI	RGGWCCY	1 cut(s)	2722
PstI	CTGCAG	1 cut(s)	1180
PstNI	CAGNNNCTG	2 cut(s)	100, 1184
PsuI	RGATCY	5 cut(s)	829, 1116, 2048, 2184, 2771
PvuII	CAGCTG	1 cut(s)	152
RsaI	GTAC	3 cut(s)	1471, 2161, 2242
RsaNI	GTAC	3 cut(s)	1470, 2160, 2241
RseI	CAYNNNNRTG	6 cut(s)	756, 1701, 1797, 2369, 2510, 2703
SapI	GCTCTTC	3 cut(s)	525, 1194, 2179
SaqAI	TTAA	7 cut(s)	399, 798, 1023, 1305, 1551, 1980, 2660
SatI	GCNGC	9 cut(s)	157, 691, 921, 1176, 1185, 1243, 1820, 2411, 2628
Sau96I	GGNCC	5 cut(s)	623, 1663, 1871, 2708, 2722
SchI	GAGTC	1 cut(s)	1147
SduI	GDGCHC	8 cut(s)	208, 409, 537, 768, 943, 1725, 2747, 2816
SfaNI	GCATC	8 cut(s)	889, 1334, 1456, 1766, 1831, 2098, 2214, 2397
SfcI	CTRYAG	2 cut(s)	944, 1176
SfuI	TTCGAA	2 cut(s)	790, 1092
SinI	GGWCC	4 cut(s)	623, 1871, 2708, 2722
SmiMI	CAYNNNNRTG	6 cut(s)	756, 1701, 1797, 2369, 2510, 2703
SmlI	CTYRAG	2 cut(s)	430, 1037
SmoI	CTYRAG	2 cut(s)	430, 1037
SseBI	AGGCCT	1 cut(s)	305
SsiI	CCGC	8 cut(s)	690, 693, 1120, 1466, 1502, 1586, 1788, 1951
SspI	AATATT	2 cut(s)	796, 1309
SspMI	CTAG	6 cut(s)	456, 774, 2034, 2055, 2229, 2848
StuI	AGGCCT	1 cut(s)	305
StyI	CCWWGG	2 cut(s)	996, 1027
TaaI	ACNGT	8 cut(s)	142, 511, 1613, 2019, 2276, 2435, 2582, 2679
TaiI	ACGT	1 cut(s)	2257
TaqI	TCGA	8 cut(s)	165, 790, 989, 1092, 1408, 2222, 2437, 2776
TaqII	GACCGA	1 cut(s)	1262
TauI	GCSGC	1 cut(s)	693
TfiI	GAWTC	6 cut(s)	322, 542, 1055, 1094, 1379, 1526
Tru1I	TTAA	7 cut(s)	399, 798, 1023, 1305, 1551, 1980, 2660
Tru9I	TTAA	7 cut(s)	399, 798, 1023, 1305, 1551, 1980, 2660
TscAI	CASTG	9 cut(s)	147, 219, 691, 963, 1571, 1648, 2373, 2587, 2788
TseFI	GTSAC	2 cut(s)	1648, 2106
TseI	GCWGC	8 cut(s)	156, 920, 1175, 1184, 1242, 1819, 2410, 2627
Tsp45I	GTSAC	2 cut(s)	1648, 2106
TspGWI	ACGGA	3 cut(s)	1700, 1755, 2094
TspRI	CASTG	9 cut(s)	147, 219, 691, 963, 1571, 1648, 2373, 2587, 2788
Van91I	CCANNNNNTGG	3 cut(s)	376, 1842, 2717
VpaK11BI	GGWCC	4 cut(s)	623, 1871, 2708, 2722
VspI	ATTAAT	2 cut(s)	399, 798
XapI	RAATTY	7 cut(s)	60, 447, 1157, 1301, 1849, 2209, 2650
XbaI	TCTAGA	1 cut(s)	773
XceI	RCATGY	3 cut(s)	1930, 2006, 2197
XcmI	CCANNNNNNNNNTGG	3 cut(s)	377, 1426, 2198
XmiI	GTMKAC	2 cut(s)	1044, 2396
XmnI	GAANNNNTTC	2 cut(s)	60, 2733
XspI	CTAG	6 cut(s)	456, 774, 2034, 2055, 2229, 2848
Zsp2I	ATGCAT	4 cut(s)	1198, 1426, 2008, 2503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.