Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003328

Physical Location & Seq

Genomic Coordinates Reverse (-)

24878507 .. 24884852

Gene Structure 6346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G61960.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2748 bp

ATGCCGTCTGATATAATGGAACAGAGAGGTGTTTCAACACCTTCCCACTTTCATGAAGATATTCATATTACTTCAGAGAGGCAATTTGGGTTTATGAAAACAGACATGATGCCTGAAAACCAAGGTGGTCGTGATAGACTTTCAAGTATGCCAAAGAGTTCCTGGACATCTGAAAGTTACCAGCTGAAGCCACAATCTAGTTTTTCTGGGTCGCACCCCTCTGGTAGCCCTAACGCAAGAAACACTACAAATGGTAGTCAGTGGGAAAGCAGTTTATTTTCCAGCTCAATGTCTGATTTATTTAGTAGAAAGCTGCGGCTACAGGGAAGTGATATGCTATCCACTATGTCTGCAAACACAGTTGTTACCCACCGTGAAGAAGAACCGTCTGAATCTTTGGAAGAGATTGAGGCACAAACTATTGGAAATCTTCTCCCAGATGAAGATGATCTTTTTGCAGAAGTGACAGGTGAGGTTGGGCGTAAATCTCGTGCTAATACAGGAGATGAGTTGGATGAGTTTGACCTCTTCAGCAGTGTTGGTGGCATGGAACTAGATGGAGATATTTTTTCTTCTGTGAGTCATAGAAATGGTGAGAGAGGTGGCAATAATTCTGTTGGCGAGCTTAACCGTGGGGAAATTCCATCCAGAACACTTTTGGTCGGAAATATCAGTAGCAATGTTGAAGACTATGAGCTGAAGGTCCTTTTTGAGCAATTTGGAGACATCCAGGCTCTTCATACAGCTTGCAAAAATCGTGGCTTTATCATGGTATCGTACTGTGATATAAGGGCTGCTCAGAATGCGGCGAGAGCACTCCAGAATAAGCTGTTAAGAGGAACAAAACTTGACATTCGTTATTCTATCTCTAAGGAAAATCCTTCACAAAAAGATACAAGTAAAGGAGCCTTGTTGGTTAATAATCTCGATTCTTCTATTTCGAATCAAGAGCTGAATCGACTGGTCAAATCGTATGGAGAGGTCAAAGAGATTCGTAGGACCATGCATGATAACTCACAGATATACATAGAGTTCTTTGACGTTCGAGCTGCAGCAGCTGCTCTTGGTGGACTAAATGGACTTGAGGTTGCTGGGAAGAAGCTTCAACTTGTGCCGACCTATCCAGAGGGTACAAGATACACGTCGCAGTGTGCTGCAAATGATACTGAAGGGTGTCTACCTAAAACGTCTTATAGTAATACATCATCGGGACACATAGGTAGACATTTCCCAGGAATGATTTCTTCAACCTCCAGTGATGGTGGATCTATGCGGGTTATACATAATTCTATTGGATCACCTGTGAATTCCTTCATTGAACGACATCGTAGTCTCAGCATTCCTATTGGATTCCCACCTTCGGCAAACGGCATCTCAGCAAGTAAGCCTGTAGGACTTCAGGAGCATGGCCACCATTTTGATAATTCAAATATGGGGATCCAAAGCATGCCAAATCTCCATCCTCATTCTTTTTCGGAGTACGTCGACAACTTTGCAAATGGTAGTCCATATACGTCCTCTGCATTTTCTGAAATGGTCAGTGATGGCTCAAAAGCAAATGAAGGCTTTATGATACATAATGTTCGTGGAGTGGAAGGCTTTAGTGGAGGCGGTATAGGATCTCCCATGCATCAAAGCTCTCGCCGCCCTATTAATTTATGGAGCAACTCTAACACTCAGCAACAAAATCCGTCAAGTGGCATGATGTGGCCTAACTCGCCATCTCACATCAACAGCATTCCTACTCAGCGCCCACCTGTTACTGTATTCTCTAGAGCACCTCCTATAATGGTGAATATGGCATCTTCCCCTGTGCACCACCACATTGGATCTGCGCCGGTATTAAATTCTCCTTTCTGGGACAGAAGACAAGCCTATGTAGCTGAATCTCTAGAATCATCTGGCTTCCACATAGGTTCTCATGGTAGCATGGGGATTCCTGGCTCTTCACCATCACATCCAATGGACATTGGTTCTCATAAGACTTTCTCTGTTGGTGGGAATCGCATGGATGTAAATTCCCAAAATGCTGTCCTGCGATCTCCTCAACAGTTATCTCATCTCTTTCCTGGAAGGAGTCCAATGGGTTCGATGCCAGGGTCATTTGACTCGCCAAATGAACGATACAGGAATCTCTCTCACCGAAGAAGCGAATCTAGCTCTAGCAATGCTGACAAAAAACTGTATGAGCTTGACGTTGACCGTATATTACGTGGGGAGGACAGGAGGACAACATTGATGATTAAAAACATTCCTAACAAGTACACTTCGAAGATGCTTCTATCTGCTATTGACGAGCATTGTAAAGGAACTTATGATTTCCTTTATTTGCCAATTGACTTCAAGAACAAATGCAATGTGGGATATGCTTTCATCAATCTTATTGAACCTGAAAAGATTGTCCCATTTTTTAAGGCATTTAATGGCAAAAAGTGGGAAAAGTTCAATAGCGAGAAGGTGGCAACGCTTACGTATGCTCGTATCCAAGGGAAAACAGCTCTTATTGCCCATTTCCAGAACTCAAGCTTAATGAACGAAGACAAACGTTGCCGACCTATTCTCTTCCACACTGATGGTCCAAATGCTGGTGATCAGGAACCATTTCCAATGGGAAGCAACATACGGTCAAGACCAGGCAAGCCACGAAGCAGTAGCATTGACAACTACAACAGCTTTAGCATCTCTTCCGTTTCTGAAAACCGAGAAGAAACTCCTAATGGAACTGATCCGTTCTTGAAGGAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0008150 GO:0010564 GO:0010638 GO:0033043 GO:0040008 GO:0040020 GO:0045787 GO:0045836 GO:0045927 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051445 GO:0051446 GO:0051726 GO:0051783 GO:0051785 GO:0065007 GO:0090068 GO:0097159 GO:1901363 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 RRM_2

Protein Analysis

915

Amino Acids

100.79

Weight (kDa)

6.49

Isoelectric Point (pI)

56.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	212 - 276	6.8e-09	RNA recognition motif
RRM_1	PF00076	297 - 361	9.1e-09	RNA recognition motif
RRM_2	PF04059	736 - 832	6e-56	RNA recognition motif 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07290 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960
fragaria_vesca	FvH4_5g09460
malus_domestica	MD06G1131000.v1.1 MD14G1147600.v1.1
prunus_persica	Prupe.5G142200_v2.0.a1 Prupe.5G142200_v2.0.a1 Prupe.5G142200_v2.0.a1 Prupe.5G142200_v2.0.a1 Prupe.5G142200_v2.0.a1
pyrus_communis	pycom06g12260 pycom14g12230
rosa_chinensis	RchiOBHm_Chr7g0188731
rosa_laevigata	RLG00000004666
rosa_multiflora	Rmu_sc0003854.1_g000006
rosa_roxburghii	Rroxscaffold_3G00266090
rosa_rugosa	Rorug06G0493200.1 Rorug06G0493300.1 Rorug06G0493400 Rorug06G0493400 Rorug06G0493500
rosa_samantha	Rh7AG098000 Rh7BG099400 Rh7CG101200 Rh7DG099800
rosa_wichuraiana	Rw7G008440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1329
AccB7I	CCANNNNNTGG	1 cut(s)	2585
AccI	GTMKAC	3 cut(s)	1177, 1222, 1485
AciI	CCGC	5 cut(s)	316, 806, 1273, 1611, 1645
AclI	AACGTT	1 cut(s)	2545
AclWI	GGATC	7 cut(s)	1273, 1303, 1432, 1445, 1627, 1837, 2720
AcoI	YGGCCR	1 cut(s)	1408
AcsI	RAATTY	4 cut(s)	639, 1306, 1846, 2017
AcuI	CTGAAG	6 cut(s)	57, 206, 514, 719, 1188, 1382
AfaI	GTAC	4 cut(s)	779, 1132, 1481, 2264
AfiI	CCNNNNNNNGG	3 cut(s)	1360, 1697, 2585
AflIII	ACRYGT	1 cut(s)	1140
AjiI	CACGTC	1 cut(s)	1143
AjnI	CCWGG	7 cut(s)	161, 729, 1231, 1939, 2068, 2095, 2632
Alw21I	GWGCWC	3 cut(s)	817, 1780, 1818
Alw26I	GTCTC	2 cut(s)	717, 1337
Alw44I	GTGCAC	1 cut(s)	1814
AlwI	GGATC	7 cut(s)	1273, 1303, 1432, 1445, 1627, 1837, 2720
AlwNI	CAGNNNCTG	1 cut(s)	1058
AoxI	GGCC	2 cut(s)	1408, 1709
ApaLI	GTGCAC	1 cut(s)	1814
ApeKI	GCWGC	7 cut(s)	313, 794, 1049, 1052, 1055, 1058, 1154
ApoI	RAATTY	4 cut(s)	639, 1306, 1846, 2017
AseI	ATTAAT	1 cut(s)	1653
Asp700I	GAANNNNTTC	4 cut(s)	60, 1240, 1310, 2601
AspLEI	GCGC	2 cut(s)	1752, 1837
AspS9I	GGNCC	3 cut(s)	703, 999, 2576
AsuHPI	GGTGA	7 cut(s)	482, 605, 1290, 1804, 1941, 2132, 2600
AsuII	TTCGAA	2 cut(s)	941, 2270
AvaII	GGWCC	3 cut(s)	703, 999, 2576
BaeGI	GKGCMC	1 cut(s)	1818
BalI	TGGCCA	1 cut(s)	1410
BamHI	GGATCC	1 cut(s)	1437
BarI	GAAGNNNNNNTAC	2 cut(s)	1161, 1193
BauI	CACGAG	1 cut(s)	489
BbsI	GAAGAC	3 cut(s)	693, 1873, 2544
Bbv12I	GWGCWC	3 cut(s)	817, 1780, 1818
BbvI	GCAGC	7 cut(s)	300, 781, 1036, 1045, 1064, 1067, 1141
BccI	CCATC	8 cut(s)	551, 652, 1253, 1467, 1538, 1729, 1960, 2567
BceAI	ACGGC	1 cut(s)	1384
BcgI	CGANNNNNNTGC	2 cut(s)	1475, 1509
BciT130I	CCWGG	7 cut(s)	163, 731, 1233, 1941, 2070, 2097, 2634
BciVI	GTATCC	1 cut(s)	2492
BclI	TGATCA	1 cut(s)	2590
BcoDI	GTCTC	2 cut(s)	717, 1337
BfaI	CTAG	6 cut(s)	198, 554, 1773, 1892, 2157, 2163
BfmI	CTRYAG	3 cut(s)	320, 1050, 1389
BfoI	RGCGCY	1 cut(s)	1753
BfuI	GTATCC	1 cut(s)	2492
Bme1390I	CCNGG	7 cut(s)	163, 731, 1233, 1941, 2070, 2097, 2634
Bme18I	GGWCC	3 cut(s)	703, 999, 2576
BmgBI	CACGTC	1 cut(s)	1143
BmgT120I	GGNCC	3 cut(s)	703, 999, 2576
BmiI	GGNNCC	3 cut(s)	907, 1439, 2598
BmrFI	CCNGG	7 cut(s)	163, 731, 1233, 1941, 2070, 2097, 2634
BmsI	GCATC	7 cut(s)	99, 1380, 1639, 1811, 2082, 2265, 2688
BpiI	GAAGAC	3 cut(s)	693, 1873, 2544
BpmI	CTGGAG	2 cut(s)	803, 1237
Bpu14I	TTCGAA	2 cut(s)	941, 2270
BpuEI	CTTGAG	2 cut(s)	1103, 2506
BsaAI	YACGTR	2 cut(s)	2213, 2472
BsaJI	CCNNGG	5 cut(s)	121, 631, 1231, 2096, 2485
Bsc4I	CCNNNNNNNGG	3 cut(s)	1360, 1697, 2585
Bse118I	RCCGGY	1 cut(s)	1837
Bse1I	ACTGG	2 cut(s)	966, 1254
Bse3DI	GCAATG	3 cut(s)	685, 2173, 2362
BseBI	CCWGG	7 cut(s)	163, 731, 1233, 1941, 2070, 2097, 2634
BseDI	CCNNGG	5 cut(s)	121, 631, 1231, 2096, 2485
BseGI	GGATG	6 cut(s)	520, 644, 726, 1459, 1957, 2017
BseLI	CCNNNNNNNGG	3 cut(s)	1360, 1697, 2585
BseMI	GCAATG	3 cut(s)	685, 2173, 2362
BseMII	CTCAG	5 cut(s)	812, 1348, 1389, 1691, 1760
BseNI	ACTGG	2 cut(s)	966, 1254
BseRI	GAGGAG	1 cut(s)	2034
BseSI	GKGCMC	1 cut(s)	1818
BseXI	GCAGC	7 cut(s)	300, 781, 1036, 1045, 1064, 1067, 1141
BseYI	CCCAGC	1 cut(s)	1091
BshFI	GGCC	2 cut(s)	1410, 1711
BsiHKAI	GWGCWC	3 cut(s)	817, 1780, 1818
BsiSI	CCGG	1 cut(s)	1838
BslFI	GGGAC	3 cut(s)	1224, 1874, 2387
BslI	CCNNNNNNNGG	3 cut(s)	1360, 1697, 2585
BsmAI	GTCTC	2 cut(s)	717, 1337
BsmFI	GGGAC	3 cut(s)	1224, 1874, 2387
BsmI	GAATGC	3 cut(s)	808, 1338, 1737
BsnI	GGCC	2 cut(s)	1410, 1711
Bsp119I	TTCGAA	2 cut(s)	941, 2270
Bsp1286I	GDGCHC	3 cut(s)	817, 1780, 1818
Bsp143I	GATC	9 cut(s)	448, 1265, 1295, 1437, 1619, 1829, 2039, 2590, 2725
BspACI	CCGC	5 cut(s)	316, 806, 1273, 1611, 1645
BspANI	GGCC	2 cut(s)	1410, 1711
BspCNI	CTCAG	5 cut(s)	811, 1347, 1388, 1690, 1759
BspHI	TCATGA	1 cut(s)	52
BspLI	GGNNCC	3 cut(s)	907, 1439, 2598
BspMAI	CTGCAG	1 cut(s)	1054
BspPI	GGATC	7 cut(s)	1273, 1303, 1432, 1445, 1627, 1837, 2720
BspQI	GCTCTTC	2 cut(s)	741, 1951
BspT104I	TTCGAA	2 cut(s)	941, 2270
BsrDI	GCAATG	3 cut(s)	685, 2173, 2362
BsrFI	RCCGGY	1 cut(s)	1837
BsrI	ACTGG	2 cut(s)	966, 1254
BssAI	RCCGGY	1 cut(s)	1837
BssECI	CCNNGG	5 cut(s)	121, 631, 1231, 2096, 2485
BssMI	GATC	9 cut(s)	448, 1265, 1295, 1437, 1619, 1829, 2039, 2590, 2725
BssSI	CACGAG	1 cut(s)	489
BssT1I	CCWWGG	2 cut(s)	121, 2485
Bst2BI	CACGAG	1 cut(s)	489
Bst2UI	CCWGG	7 cut(s)	163, 731, 1233, 1941, 2070, 2097, 2634
Bst6I	CTCTTC	6 cut(s)	396, 533, 741, 1951, 2567, 2689
BstAPI	GCANNNNNTGC	1 cut(s)	1058
BstBAI	YACGTR	2 cut(s)	2213, 2472
BstBI	TTCGAA	2 cut(s)	941, 2270
BstC8I	GCNNGC	4 cut(s)	623, 748, 1448, 2639
BstDEI	CTNAG	6 cut(s)	798, 870, 1334, 1375, 1677, 1746
BstDSI	CCRYGG	1 cut(s)	631
BstF5I	GGATG	6 cut(s)	520, 644, 726, 1459, 1957, 2017
BstH2I	RGCGCY	1 cut(s)	1753
BstHHI	GCGC	2 cut(s)	1752, 1837
BstKTI	GATC	9 cut(s)	451, 1268, 1298, 1440, 1622, 1832, 2042, 2593, 2728
BstMAI	GTCTC	2 cut(s)	717, 1337
BstMBI	GATC	9 cut(s)	448, 1265, 1295, 1437, 1619, 1829, 2039, 2590, 2725
BstMWI	GCNNNNNNNGC	9 cut(s)	803, 812, 1055, 1058, 1644, 1717, 1880, 2157, 2504
BstNI	CCWGG	7 cut(s)	163, 731, 1233, 1941, 2070, 2097, 2634
BstNSI	RCATGY	1 cut(s)	1450
BstSCI	CCNGG	7 cut(s)	161, 729, 1231, 1939, 2068, 2095, 2632
BstSFI	CTRYAG	3 cut(s)	320, 1050, 1389
BstSLI	GKGCMC	1 cut(s)	1818
BstSNI	TACGTA	1 cut(s)	2472
BstV1I	GCAGC	7 cut(s)	300, 781, 1036, 1045, 1064, 1067, 1141
BstV2I	GAAGAC	3 cut(s)	693, 1873, 2544
BstX2I	RGATCY	4 cut(s)	1265, 1437, 1619, 1829
BstXI	CCANNNNNNTGG	2 cut(s)	1826, 2573
BstYI	RGATCY	4 cut(s)	1265, 1437, 1619, 1829
BsuI	GTATCC	1 cut(s)	2492
BsuRI	GGCC	2 cut(s)	1410, 1711
BtgI	CCRYGG	1 cut(s)	631
BtrI	CACGTC	1 cut(s)	1143
BtsCI	GGATG	6 cut(s)	520, 644, 726, 1459, 1957, 2017
BtsI	GCAGTG	2 cut(s)	541, 1154
BtsIMutI	CAGTG	6 cut(s)	266, 541, 1154, 1261, 1546, 2568
Cac8I	GCNNGC	4 cut(s)	623, 748, 1448, 2639
CaiI	CAGNNNCTG	1 cut(s)	1058
CciI	TCATGA	1 cut(s)	52
CfoI	GCGC	2 cut(s)	1752, 1837
Cfr10I	RCCGGY	1 cut(s)	1837
Cfr13I	GGNCC	3 cut(s)	703, 999, 2576
Csp6I	GTAC	4 cut(s)	778, 1131, 1480, 2263
CspCI	CAANNNNNGTGG	2 cut(s)	739, 774
CviQI	GTAC	4 cut(s)	778, 1131, 1480, 2263
DdeI	CTNAG	6 cut(s)	798, 870, 1334, 1375, 1677, 1746
DpnI	GATC	9 cut(s)	450, 1267, 1297, 1439, 1621, 1831, 2041, 2592, 2727
DpnII	GATC	9 cut(s)	448, 1265, 1295, 1437, 1619, 1829, 2039, 2590, 2725
DrdI	GACNNNNNNGTC	1 cut(s)	1329
DseDI	GACNNNNNNGTC	1 cut(s)	1329
EaeI	YGGCCR	1 cut(s)	1408
Eam1104I	CTCTTC	6 cut(s)	396, 533, 741, 1951, 2567, 2689
EarI	CTCTTC	6 cut(s)	396, 533, 741, 1951, 2567, 2689
Eco105I	TACGTA	1 cut(s)	2472
Eco130I	CCWWGG	2 cut(s)	121, 2485
Eco47I	GGWCC	3 cut(s)	703, 999, 2576
Eco57I	CTGAAG	6 cut(s)	57, 206, 514, 719, 1188, 1382
EcoO109I	RGGNCCY	1 cut(s)	703
EcoRI	GAATTC	1 cut(s)	1306
EcoRII	CCWGG	7 cut(s)	161, 729, 1231, 1939, 2068, 2095, 2632
EcoT14I	CCWWGG	2 cut(s)	121, 2485
EcoT22I	ATGCAT	2 cut(s)	1008, 1632
ErhI	CCWWGG	2 cut(s)	121, 2485
FalI	AAGNNNNNCTT	2 cut(s)	435, 467
FaqI	GGGAC	3 cut(s)	1224, 1874, 2387
FauI	CCCGC	1 cut(s)	1266
FbaI	TGATCA	1 cut(s)	2590
FblI	GTMKAC	3 cut(s)	1177, 1222, 1485
FokI	GGATG	6 cut(s)	527, 631, 713, 1446, 1944, 2024
FspBI	CTAG	6 cut(s)	198, 554, 1773, 1892, 2157, 2163
GlaI	GCGC	2 cut(s)	1751, 1836
GsaI	CCCAGC	1 cut(s)	1095
GsuI	CTGGAG	2 cut(s)	803, 1237
HaeII	RGCGCY	1 cut(s)	1753
HaeIII	GGCC	2 cut(s)	1410, 1711
HapII	CCGG	1 cut(s)	1838
HhaI	GCGC	2 cut(s)	1752, 1837
Hin6I	GCGC	2 cut(s)	1750, 1835
HinP1I	GCGC	2 cut(s)	1750, 1835
HincII	GTYRAC	2 cut(s)	1486, 2200
HindII	GTYRAC	2 cut(s)	1486, 2200
HindIII	AAGCTT	2 cut(s)	1100, 2524
HpaII	CCGG	1 cut(s)	1838
HphI	GGTGA	7 cut(s)	482, 605, 1290, 1804, 1941, 2132, 2600
Hpy166II	GTNNAC	7 cut(s)	1070, 1178, 1223, 1486, 1816, 2200, 2265
Hpy8I	GTNNAC	7 cut(s)	1070, 1178, 1223, 1486, 1816, 2200, 2265
Hpy99I	CGWCG	2 cut(s)	1147, 1487
HpyCH4IV	ACGT	9 cut(s)	1041, 1142, 1187, 1482, 1514, 2196, 2212, 2471, 2545
HpyF10VI	GCNNNNNNNGC	9 cut(s)	803, 812, 1055, 1058, 1644, 1717, 1880, 2157, 2504
HpyF3I	CTNAG	6 cut(s)	798, 870, 1334, 1375, 1677, 1746
HpySE526I	ACGT	9 cut(s)	1041, 1142, 1187, 1482, 1514, 2196, 2212, 2471, 2545
HspAI	GCGC	2 cut(s)	1750, 1835
Ksp22I	TGATCA	1 cut(s)	2590
Kzo9I	GATC	9 cut(s)	448, 1265, 1295, 1437, 1619, 1829, 2039, 2590, 2725
LguI	GCTCTTC	2 cut(s)	741, 1951
LmnI	GCTCC	3 cut(s)	905, 1402, 1662
Lsp1109I	GCAGC	7 cut(s)	300, 781, 1036, 1045, 1064, 1067, 1141
LweI	GCATC	7 cut(s)	99, 1380, 1639, 1811, 2082, 2265, 2688
MaeI	CTAG	6 cut(s)	198, 554, 1773, 1892, 2157, 2163
MaeII	ACGT	9 cut(s)	1041, 1142, 1187, 1482, 1514, 2196, 2212, 2471, 2545
MaeIII	GTNAC	4 cut(s)	176, 364, 463, 1759
MalI	GATC	9 cut(s)	450, 1267, 1297, 1439, 1621, 1831, 2041, 2592, 2727
MboI	GATC	9 cut(s)	448, 1265, 1295, 1437, 1619, 1829, 2039, 2590, 2725
MfeI	CAATTG	1 cut(s)	2334
MflI	RGATCY	4 cut(s)	1265, 1437, 1619, 1829
MhlI	GDGCHC	3 cut(s)	817, 1780, 1818
MlsI	TGGCCA	1 cut(s)	1410
MluNI	TGGCCA	1 cut(s)	1410
MlyI	GAGTC	3 cut(s)	589, 2086, 2102
MmeI	TCCRAC	2 cut(s)	492, 643
Mox20I	TGGCCA	1 cut(s)	1410
Mph1103I	ATGCAT	2 cut(s)	1008, 1632
MroXI	GAANNNNTTC	4 cut(s)	60, 1240, 1310, 2601
MscI	TGGCCA	1 cut(s)	1410
MseI	TTAA	9 cut(s)	627, 833, 918, 1653, 1844, 2244, 2412, 2421, 2528
MslI	CAYNNNNRTG	3 cut(s)	51, 588, 2571
Msp20I	TGGCCA	1 cut(s)	1410
MspA1I	CMGCKG	2 cut(s)	184, 1058
MspI	CCGG	1 cut(s)	1838
MspR9I	CCNGG	7 cut(s)	163, 731, 1233, 1941, 2070, 2097, 2634
MunI	CAATTG	1 cut(s)	2334
Mva1269I	GAATGC	3 cut(s)	808, 1338, 1737
MvaI	CCWGG	7 cut(s)	163, 731, 1233, 1941, 2070, 2097, 2634
MwoI	GCNNNNNNNGC	9 cut(s)	803, 812, 1055, 1058, 1644, 1717, 1880, 2157, 2504
NdeII	GATC	9 cut(s)	448, 1265, 1295, 1437, 1619, 1829, 2039, 2590, 2725
NlaIV	GGNNCC	3 cut(s)	907, 1439, 2598
NmuCI	GTSAC	1 cut(s)	463
NsiI	ATGCAT	2 cut(s)	1008, 1632
NspI	RCATGY	1 cut(s)	1450
NspV	TTCGAA	2 cut(s)	941, 2270
PaeI	GCATGC	1 cut(s)	1450
PagI	TCATGA	1 cut(s)	52
PciSI	GCTCTTC	2 cut(s)	741, 1951
PctI	GAATGC	3 cut(s)	808, 1338, 1737
PdmI	GAANNNNTTC	4 cut(s)	60, 1240, 1310, 2601
PflMI	CCANNNNNTGG	1 cut(s)	2585
PfoI	TCCNGGA	2 cut(s)	161, 2068
PleI	GAGTC	3 cut(s)	588, 2085, 2102
PpsI	GAGTC	3 cut(s)	588, 2085, 2102
Ppu21I	YACGTR	2 cut(s)	2213, 2472
PpuMI	RGGWCCY	1 cut(s)	703
PshBI	ATTAAT	1 cut(s)	1653
Psp1406I	AACGTT	1 cut(s)	2545
Psp5II	RGGWCCY	1 cut(s)	703
Psp6I	CCWGG	7 cut(s)	161, 729, 1231, 1939, 2068, 2095, 2632
PspFI	CCCAGC	1 cut(s)	1091
PspGI	CCWGG	7 cut(s)	161, 729, 1231, 1939, 2068, 2095, 2632
PspN4I	GGNNCC	3 cut(s)	907, 1439, 2598
PspPI	GGNCC	3 cut(s)	703, 999, 2576
PspPPI	RGGWCCY	1 cut(s)	703
PstI	CTGCAG	1 cut(s)	1054
PstNI	CAGNNNCTG	1 cut(s)	1058
PsuI	RGATCY	4 cut(s)	1265, 1437, 1619, 1829
PvuII	CAGCTG	2 cut(s)	184, 1058
RsaI	GTAC	4 cut(s)	779, 1132, 1481, 2264
RsaNI	GTAC	4 cut(s)	778, 1131, 1480, 2263
RseI	CAYNNNNRTG	3 cut(s)	51, 588, 2571
SalI	GTCGAC	1 cut(s)	1484
SapI	GCTCTTC	2 cut(s)	741, 1951
SaqAI	TTAA	9 cut(s)	627, 833, 918, 1653, 1844, 2244, 2412, 2421, 2528
Sau3AI	GATC	9 cut(s)	448, 1265, 1295, 1437, 1619, 1829, 2039, 2590, 2725
Sau96I	GGNCC	3 cut(s)	703, 999, 2576
SchI	GAGTC	3 cut(s)	589, 2086, 2102
ScrFI	CCNGG	7 cut(s)	163, 731, 1233, 1941, 2070, 2097, 2634
SduI	GDGCHC	3 cut(s)	817, 1780, 1818
SfaNI	GCATC	7 cut(s)	99, 1380, 1639, 1811, 2082, 2265, 2688
SfcI	CTRYAG	3 cut(s)	320, 1050, 1389
SfuI	TTCGAA	2 cut(s)	941, 2270
SinI	GGWCC	3 cut(s)	703, 999, 2576
SmiMI	CAYNNNNRTG	3 cut(s)	51, 588, 2571
SmlI	CTYRAG	2 cut(s)	1082, 2521
SmoI	CTYRAG	2 cut(s)	1082, 2521
SnaBI	TACGTA	1 cut(s)	2472
SphI	GCATGC	1 cut(s)	1450
SsiI	CCGC	5 cut(s)	316, 806, 1273, 1611, 1645
SspMI	CTAG	6 cut(s)	198, 554, 1773, 1892, 2157, 2163
StyD4I	CCNGG	7 cut(s)	161, 729, 1231, 1939, 2068, 2095, 2632
StyI	CCWWGG	2 cut(s)	121, 2485
TaiI	ACGT	9 cut(s)	1044, 1145, 1190, 1485, 1517, 2199, 2215, 2474, 2548
TaqI	TCGA	7 cut(s)	927, 941, 958, 1045, 1485, 2090, 2270
TatI	WGTACW	1 cut(s)	2262
TauI	GCSGC	3 cut(s)	319, 809, 1647
Tru1I	TTAA	9 cut(s)	627, 833, 918, 1653, 1844, 2244, 2412, 2421, 2528
Tru9I	TTAA	9 cut(s)	627, 833, 918, 1653, 1844, 2244, 2412, 2421, 2528
TscAI	CASTG	6 cut(s)	266, 541, 1154, 1261, 1546, 2575
TseFI	GTSAC	1 cut(s)	463
TseI	GCWGC	7 cut(s)	313, 794, 1049, 1052, 1055, 1058, 1154
Tsp45I	GTSAC	1 cut(s)	463
TspGWI	ACGGA	3 cut(s)	1680, 2677, 2718
TspRI	CASTG	6 cut(s)	266, 541, 1154, 1261, 1546, 2575
Van91I	CCANNNNNTGG	1 cut(s)	2585
VneI	GTGCAC	1 cut(s)	1814
VpaK11BI	GGWCC	3 cut(s)	703, 999, 2576
VspI	ATTAAT	1 cut(s)	1653
XapI	RAATTY	4 cut(s)	639, 1306, 1846, 2017
XbaI	TCTAGA	2 cut(s)	1772, 1891
XceI	RCATGY	1 cut(s)	1450
XcmI	CCANNNNNNNNNTGG	2 cut(s)	159, 655
XmiI	GTMKAC	3 cut(s)	1177, 1222, 1485
XmnI	GAANNNNTTC	4 cut(s)	60, 1240, 1310, 2601
XspI	CTAG	6 cut(s)	198, 554, 1773, 1892, 2157, 2163
Zsp2I	ATGCAT	2 cut(s)	1008, 1632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.