Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0003328

Physical Location & Seq

Genomic Coordinates Reverse (-)

7693460 .. 7700124

Gene Structure 6665 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G008440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2859 bp

ATGCCATTTGAAGTAATGGATCAAAGGGGTGTATCTGTCTCTTCCCACTTCTTTGAAGAAATTCCTTTTCCTTCCGAGAGACAAGTTGGATTTCAGAAGCTGAAAACCATGCCTGATCACCAAGTGGGAGTGGATAGAACAGTGCCGACAGCTGGCAGCATATTCGATCCTTCATTACCCTCAAAAAGGTTTTTACCAATTGGGGCACAATCAGTGGATTACTTTGATATGCCACAATCCAATCTGGCTGGGGAGTGCACAGAAAGGCTAAGCATTAGTGGAGGAGTTGCCAATACATCTAAGGCCTCGTGGAAACCTATGAATCATCATCCAAAGTTGTGGTCAGACTTGCCCACACGGCCAACATCCCATAGCTTGGTTGGAAGCAAAACTGCTATTAATGGTGCTCAGCATGAAAGCAGTCTGTTCTCAAGCTCATTGTCTGAAATTTTTACTAGAAAATGTAAGGTTTTTGAGATTGCTAAAGGTGATTTTGTATCTCATCAATCTACAAATACTGTTGCTTCCCAACATGAGGAAGAGCCCTTTGAATCGCTTGAAGAAATGGAAGCACAAACCATTGGAAATCTCCTTCCTGATGAAAATGATTTGTTTTCTGGCATGATAGATGGTCCGGGTAAAATTGTGCATGGTAGTAATGGGGATGAATTGGAAGATTTTGATCTTTTTAGCAGTGGCGGCGGCATGGAATTAGAAGGAGATGATCAAGGGGGTGGTAATTTTTCACTTGTGGGTGAACACCCCTATGGCGAGCACCCTTCTAGAACACTTTTTGTTCGAAATATTAATAGCAATGTTGAAGATTTGGAATTGAAGGATCTTTTTGAGCAATATGGAGATATCCGAACACTTTACACAGCCTGCAAGCATCGTGGGTTTGTTATGATTTCTTATTATGATATGAGGGCTGCCCAAAAAGCGATAAGAGCACTACAGAGTAAGCCACTGAGGCGTAGGAAGCTTGACATACACTATTCGATACCCAAGGACAACCCTTCTGATAAAGATGTTAACCAAGGAACACTTGAGGTATACAATGTTGATTCTTCTGTTTCTGATGATGAGCTTACTAAACTTTTCGAATCTTATGGGGAAATCAAAGAGATCCGCGAGGCTCCAAACAAGAGTCATAACAAGTTGATAGAGTTTTATGATGTTAGAGCTGCAGAAGCTGCTCTTCATGCATTGAATACGAGTGAGATTGGTGGGAGGCAGATCAAGCTTGAACCCAGCCATCCAGGGGTTGCCAGAATGGGTTTCGGTCAAGGTTCCAAGCAGGAGCAAGATGAATTTAATATTTGTCATAGTCCATCCGACAACTTGTTAGCAGGATGCAAGGCAACCCTTCATCCTGGAATGGCTAATGAATCTAACCTGGGATTACATTCTTCAATTCGATCACCTTCCAATGCATTTATGGGAAATGCTTTAGCGCATCTGAGTTCAAGTGTTCCTCGTACCTTGCCCTCTCCGATGAGAGTGGTGTCTGCGGACAAAAACTTTTGCCTTCCTGATTCCAATCACTCTCTGAATGAAATTAAGTTTGGTAACCAGTGCGTTCCCAATTTCCATCCGCATTCCCTCCCTGAGTATCATGACAGTTTAGCACATGGTATCACATCCAACTCCAGTGGAGTGACTGGCAATGTGGGCCTTAGAATGACAGAAGGAACCGACAGGAGGCACATTCGTGAAATGAATGCAAATGGGCACCTGATGGAACTGAACGGAGGAGGAGCTTTTGCATCTTCTGGAAATGGGAATGCTGGGGTTCGCGGACATCATTATGTTTCCAATTCTTATCAGCAGCATCCTTCAAGTCCCATGATGTGGCAGAATTCACCATCATTTATCAATGGTCCTCATGCTCATCGCTTTCCACAAATGCCTGGCTTCCCTAGAACACCTCCTCACATGCTGAATGGGACATCACCTGTCCGCCACCATGTTGGATCAGCACCAGCAGTTAACCCTTCCCTTTGGGAAAGACATGCATTTTCAGGACAGTCTCCTGACACTTCTAGTCTTCACCTGGGATCTCCTAGCTTCGCCTGTTTTCCCAGTAGTCCCCAGTTGCATCCTATGGAAGTTCCGTCACGCAACATCTTTTCTCTTGTTGGTGGAAATTGCTCAGACATGAATACAAGTACCCGGCAACGCTCTTCGCAGGAGATCTGCCACATGTTTCCTGGGAGGAATTCAATGATGTCGATGCCTACCTCTTTTGGTTCACCAAATGAACGTGTCAGAAATCTATCTCACCGTAGAAGTGAAGCAAACTCTCATAATGCTGATAGGAAACAATATGAACTTGATATTGAGCGCATATTGCGTGGGGATGACAATCGAACCACACTGATGATAAAGAACATTCCCAACAAGTATACTTCAAAGATGCTGCTTGCAGTAATTGATGAGAACTGTCGAGGAATATATGACTTTATTTATTTGCCAATTGACTTCAAGAACAAATGCAATGTGGGATATGCATTCATCAACATGATTGATCCTCAACAGATTGTTCCATTCTATAAGGCATTCAATGGCAAAAAATGGGAGAAGTTCAACAGTGAAAAGGTTGCAACACTTGCATATGCTCGTATTCAGGGAAAAGCTGCTCTTATTGCCCATTTCCAGAATTCAAGCTTAATGAATGAGGACAAACGGTGTCGCCCTATACTCTTCCACACAGATGGACCAAATGCTGGGGACCCGGAACCCTTTCCAATGGGCACCCACATCCGATCAAGACCAGGAAGATCTCGAACCAGTGGCTATGAGGAAAGCCATAACCAATGGAGCCCATCTTCATCTGCAAATGGAGAGGAAAGTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0008150 GO:0010564 GO:0010638 GO:0033043 GO:0040008 GO:0040020 GO:0045787 GO:0045836 GO:0045927 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051445 GO:0051446 GO:0051726 GO:0051783 GO:0051785 GO:0065007 GO:0090068 GO:0097159 GO:1901363 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 RRM_2

Protein Analysis

952

Amino Acids

105.43

Weight (kDa)

6.32

Isoelectric Point (pI)

54.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	264 - 328	3.5e-11	RNA recognition motif
RRM_1	PF00076	351 - 414	1.6e-08	RNA recognition motif
RRM_2	PF04059	790 - 886	7e-54	RNA recognition motif 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07290 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960
fragaria_vesca	FvH4_5g09460
malus_domestica	MD06G1131000.v1.1 MD14G1147600.v1.1
prunus_persica	Prupe.5G142200_v2.0.a1 Prupe.5G142200_v2.0.a1 Prupe.5G142200_v2.0.a1 Prupe.5G142200_v2.0.a1 Prupe.5G142200_v2.0.a1
pyrus_communis	pycom06g12260 pycom14g12230
rosa_chinensis	RchiOBHm_Chr7g0188731
rosa_laevigata	RLG00000004666
rosa_multiflora	Rmu_sc0003854.1_g000006
rosa_roxburghii	Rroxscaffold_3G00266090
rosa_rugosa	Rorug06G0493200.1 Rorug06G0493300.1 Rorug06G0493400 Rorug06G0493400 Rorug06G0493500
rosa_samantha	Rh7AG098000 Rh7BG099400 Rh7CG101200 Rh7DG099800
rosa_wichuraiana	Rw7G008440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	1731, 2753
AccB7I	CCANNNNNTGG	3 cut(s)	376, 1851, 2726
AccI	GTMKAC	2 cut(s)	1053, 2405
AccII	CGCG	2 cut(s)	1131, 1797
AciI	CCGC	7 cut(s)	699, 702, 1129, 1511, 1595, 1797, 1960
AclWI	GGATC	7 cut(s)	27, 161, 846, 1120, 1981, 2065, 2522
AcoI	YGGCCR	1 cut(s)	359
AcsI	RAATTY	6 cut(s)	60, 447, 1310, 1858, 2218, 2659
AdeI	CACNNNGTG	1 cut(s)	124
AfaI	GTAC	2 cut(s)	1480, 2170
AfiI	CCNNNNNNNGG	8 cut(s)	152, 186, 376, 535, 1261, 1701, 1851, 2726
AflIII	ACRYGT	2 cut(s)	2202, 2263
AjnI	CCWGG	7 cut(s)	1258, 1372, 1395, 1909, 2052, 2209, 2773
AjuI	GAANNNNNNNTTGG	2 cut(s)	1548, 1580
AleI	CACNNNNGTG	1 cut(s)	1710
Alw21I	GWGCWC	4 cut(s)	260, 409, 777, 952
Alw26I	GTCTC	3 cut(s)	43, 73, 2034
Alw44I	GTGCAC	1 cut(s)	256
AlwI	GGATC	7 cut(s)	27, 161, 846, 1120, 1981, 2065, 2522
AlwNI	CAGNNNCTG	2 cut(s)	100, 1193
AoxI	GGCC	3 cut(s)	303, 359, 1672
ApaLI	GTGCAC	1 cut(s)	256
ApeKI	GCWGC	7 cut(s)	156, 929, 1184, 1193, 1828, 2419, 2636
ApoI	RAATTY	6 cut(s)	60, 447, 1310, 1858, 2218, 2659
ArsI	GACNNNNNNTTYG	2 cut(s)	326, 358
AseI	ATTAAT	2 cut(s)	399, 807
Asp700I	GAANNNNTTC	2 cut(s)	60, 2742
AspLEI	GCGC	2 cut(s)	1456, 2346
AspS9I	GGNCC	5 cut(s)	632, 1672, 1880, 2717, 2731
AsuC2I	CCSGG	3 cut(s)	636, 2173, 2735
AsuHPI	GGTGA	9 cut(s)	110, 500, 767, 1413, 1854, 1944, 2042, 2244, 2273
AsuII	TTCGAA	2 cut(s)	799, 1101
AvaII	GGWCC	4 cut(s)	632, 1880, 2717, 2731
BaeGI	GKGCMC	4 cut(s)	208, 260, 1734, 2756
BanI	GGYRCC	2 cut(s)	1731, 2753
BanII	GRGCYC	2 cut(s)	546, 2825
BauI	CACGAG	1 cut(s)	307
BbsI	GAAGAC	1 cut(s)	2039
Bbv12I	GWGCWC	4 cut(s)	260, 409, 777, 952
BbvI	GCAGC	7 cut(s)	168, 916, 1171, 1180, 1840, 2406, 2623
BccI	CCATC	8 cut(s)	623, 1263, 1339, 1599, 1732, 1873, 2708, 2833
BceAI	ACGGC	1 cut(s)	374
BcgI	CGANNNNNNTGC	2 cut(s)	145, 179
BciT130I	CCWGG	7 cut(s)	1260, 1374, 1397, 1911, 2054, 2211, 2775
BclI	TGATCA	2 cut(s)	115, 724
BcnI	CCSGG	3 cut(s)	636, 2173, 2735
BcoDI	GTCTC	3 cut(s)	43, 73, 2034
BfaI	CTAG	6 cut(s)	456, 783, 1920, 2043, 2064, 2857
BfmI	CTRYAG	2 cut(s)	953, 1185
BglI	GCCNNNNNGGC	2 cut(s)	358, 970
BglII	AGATCT	2 cut(s)	2193, 2780
BisI	GCNGC	9 cut(s)	157, 700, 703, 930, 1185, 1194, 1829, 2420, 2637
BlpI	GCTNAGC	2 cut(s)	269, 408
BlsI	GCNGC	9 cut(s)	158, 701, 704, 931, 1186, 1195, 1830, 2421, 2638
Bme18I	GGWCC	4 cut(s)	632, 1880, 2717, 2731
BmgT120I	GGNCC	5 cut(s)	632, 1672, 1880, 2717, 2731
BmiI	GGNNCC	9 cut(s)	1137, 1291, 1693, 1733, 2732, 2733, 2739, 2755, 2822
BmrI	ACTGGG	2 cut(s)	2076, 2086
BmsI	GCATC	8 cut(s)	898, 1343, 1465, 1775, 1840, 2107, 2223, 2406
BmuI	ACTGGG	2 cut(s)	2076, 2086
BpiI	GAAGAC	1 cut(s)	2039
BpmI	CTGGAG	1 cut(s)	1633
Bpu1102I	GCTNAGC	2 cut(s)	269, 408
Bpu14I	TTCGAA	2 cut(s)	799, 1101
BpuEI	CTTGAG	2 cut(s)	415, 1067
BpuMI	CCSGG	3 cut(s)	636, 2173, 2735
BsaBI	GATNNNNATC	3 cut(s)	681, 1539, 2364
BsaJI	CCNNGG	6 cut(s)	1005, 1036, 1259, 1396, 2053, 2210
Bsc4I	CCNNNNNNNGG	8 cut(s)	152, 186, 376, 535, 1261, 1701, 1851, 2726
Bse1I	ACTGG	6 cut(s)	1573, 1650, 1666, 2082, 2092, 2790
Bse3DI	GCAATG	3 cut(s)	820, 1672, 2503
Bse8I	GATNNNNATC	3 cut(s)	681, 1539, 2364
BseBI	CCWGG	7 cut(s)	1260, 1374, 1397, 1911, 2054, 2211, 2775
BseDI	CCNNGG	6 cut(s)	1005, 1036, 1259, 1396, 2053, 2210
BseJI	GATNNNNATC	3 cut(s)	681, 1539, 2364
BseLI	CCNNNNNNNGG	8 cut(s)	152, 186, 376, 535, 1261, 1701, 1851, 2726
BseMI	GCAATG	3 cut(s)	820, 1672, 2503
BseMII	CTCAG	5 cut(s)	422, 959, 1451, 1599, 2166
BseNI	ACTGG	6 cut(s)	1573, 1650, 1666, 2082, 2092, 2790
BseRI	GAGGAG	4 cut(s)	297, 1767, 1770, 1920
BseSI	GKGCMC	4 cut(s)	208, 260, 1734, 2756
BseXI	GCAGC	7 cut(s)	168, 916, 1171, 1180, 1840, 2406, 2623
BseYI	CCCAGC	4 cut(s)	248, 1250, 1787, 2726
Bsh1236I	CGCG	2 cut(s)	1131, 1797
BshFI	GGCC	3 cut(s)	305, 361, 1674
BshNI	GGYRCC	2 cut(s)	1731, 2753
BsiHKAI	GWGCWC	4 cut(s)	260, 409, 777, 952
BsiSI	CCGG	3 cut(s)	635, 2173, 2735
BslFI	GGGAC	4 cut(s)	1827, 1960, 2073, 2744
BslI	CCNNNNNNNGG	8 cut(s)	152, 186, 376, 535, 1261, 1701, 1851, 2726
BsmAI	GTCTC	3 cut(s)	43, 73, 2034
BsmFI	GGGAC	4 cut(s)	1827, 1960, 2073, 2744
BsmI	GAATGC	5 cut(s)	1597, 1726, 1789, 2510, 2558
BsnI	GGCC	3 cut(s)	305, 361, 1674
Bsp119I	TTCGAA	2 cut(s)	799, 1101
Bsp1286I	GDGCHC	9 cut(s)	208, 260, 409, 546, 777, 952, 1734, 2756, 2825
Bsp1720I	GCTNAGC	2 cut(s)	269, 408
BspACI	CCGC	7 cut(s)	699, 702, 1129, 1511, 1595, 1797, 1960
BspANI	GGCC	3 cut(s)	305, 361, 1674
BspCNI	CTCAG	5 cut(s)	421, 960, 1452, 1600, 2165
BspFNI	CGCG	2 cut(s)	1131, 1797
BspHI	TCATGA	1 cut(s)	1615
BspLI	GGNNCC	9 cut(s)	1137, 1291, 1693, 1733, 2732, 2733, 2739, 2755, 2822
BspMAI	CTGCAG	1 cut(s)	1189
BspPI	GGATC	7 cut(s)	27, 161, 846, 1120, 1981, 2065, 2522
BspQI	GCTCTTC	3 cut(s)	534, 1203, 2188
BspT104I	TTCGAA	2 cut(s)	799, 1101
BspT107I	GGYRCC	2 cut(s)	1731, 2753
BsrDI	GCAATG	3 cut(s)	820, 1672, 2503
BsrI	ACTGG	6 cut(s)	1573, 1650, 1666, 2082, 2092, 2790
BssECI	CCNNGG	6 cut(s)	1005, 1036, 1259, 1396, 2053, 2210
BssNAI	GTATAC	2 cut(s)	1054, 2406
BssSI	CACGAG	1 cut(s)	307
BssT1I	CCWWGG	2 cut(s)	1005, 1036
Bst1107I	GTATAC	2 cut(s)	1054, 2406
Bst2BI	CACGAG	1 cut(s)	307
Bst2UI	CCWGG	7 cut(s)	1260, 1374, 1397, 1911, 2054, 2211, 2775
Bst4CI	ACNGT	8 cut(s)	142, 520, 1622, 2028, 2285, 2444, 2591, 2688
Bst6I	CTCTTC	5 cut(s)	46, 534, 1203, 2188, 2708
BstAPI	GCANNNNNTGC	2 cut(s)	1193, 2609
BstBI	TTCGAA	2 cut(s)	799, 1101
BstC8I	GCNNGC	5 cut(s)	154, 773, 883, 887, 2424
BstDEI	CTNAG	8 cut(s)	269, 300, 408, 968, 1460, 1608, 1676, 2152
BstEII	GGTNACC	1 cut(s)	1568
BstENI	CCTNNNNNAGG	1 cut(s)	184
BstFNI	CGCG	2 cut(s)	1131, 1797
BstHHI	GCGC	2 cut(s)	1456, 2346
BstMAI	GTCTC	3 cut(s)	43, 73, 2034
BstNI	CCWGG	7 cut(s)	1260, 1374, 1397, 1911, 2054, 2211, 2775
BstNSI	RCATGY	3 cut(s)	1939, 2015, 2206
BstPI	GGTNACC	1 cut(s)	1568
BstSFI	CTRYAG	2 cut(s)	953, 1185
BstSLI	GKGCMC	4 cut(s)	208, 260, 1734, 2756
BstUI	CGCG	2 cut(s)	1131, 1797
BstV1I	GCAGC	7 cut(s)	168, 916, 1171, 1180, 1840, 2406, 2623
BstV2I	GAAGAC	1 cut(s)	2039
BstX2I	RGATCY	5 cut(s)	838, 1125, 2057, 2193, 2780
BstXI	CCANNNNNNTGG	3 cut(s)	339, 1970, 2714
BstYI	RGATCY	5 cut(s)	838, 1125, 2057, 2193, 2780
BstZ17I	GTATAC	2 cut(s)	1054, 2406
BsuRI	GGCC	3 cut(s)	305, 361, 1674
BtgZI	GCGATG	1 cut(s)	1877
BtsI	GCAGTG	1 cut(s)	700
BtsIMutI	CAGTG	9 cut(s)	147, 219, 700, 965, 1580, 1657, 2375, 2596, 2797
Cac8I	GCNNGC	5 cut(s)	154, 773, 883, 887, 2424
CaiI	CAGNNNCTG	2 cut(s)	100, 1193
CciI	TCATGA	1 cut(s)	1615
CfoI	GCGC	2 cut(s)	1456, 2346
Cfr13I	GGNCC	5 cut(s)	632, 1672, 1880, 2717, 2731
Csp6I	GTAC	2 cut(s)	1479, 2169
CspCI	CAANNNNNGTGG	4 cut(s)	874, 909, 1633, 1668
CviQI	GTAC	2 cut(s)	1479, 2169
DdeI	CTNAG	8 cut(s)	269, 300, 408, 968, 1460, 1608, 1676, 2152
DraIII	CACNNNGTG	1 cut(s)	124
EaeI	YGGCCR	1 cut(s)	359
Eam1104I	CTCTTC	5 cut(s)	46, 534, 1203, 2188, 2708
EarI	CTCTTC	5 cut(s)	46, 534, 1203, 2188, 2708
EciI	GGCGGA	1 cut(s)	1949
Eco130I	CCWWGG	2 cut(s)	1005, 1036
Eco147I	AGGCCT	1 cut(s)	305
Eco24I	GRGCYC	2 cut(s)	546, 2825
Eco32I	GATATC	1 cut(s)	862
Eco47I	GGWCC	4 cut(s)	632, 1880, 2717, 2731
Eco91I	GGTNACC	1 cut(s)	1568
EcoNI	CCTNNNNNAGG	1 cut(s)	184
EcoO109I	RGGNCCY	1 cut(s)	2731
EcoO65I	GGTNACC	1 cut(s)	1568
EcoRI	GAATTC	3 cut(s)	1858, 2218, 2659
EcoRII	CCWGG	7 cut(s)	1258, 1372, 1395, 1909, 2052, 2209, 2773
EcoRV	GATATC	1 cut(s)	862
EcoT14I	CCWWGG	2 cut(s)	1005, 1036
EcoT22I	ATGCAT	4 cut(s)	1207, 1435, 2017, 2512
EcoT38I	GRGCYC	2 cut(s)	546, 2825
ErhI	CCWWGG	2 cut(s)	1005, 1036
FalI	AAGNNNNNCTT	6 cut(s)	1029, 1061, 1182, 1214, 2625, 2657
FaqI	GGGAC	4 cut(s)	1827, 1960, 2073, 2744
FauNDI	CATATG	1 cut(s)	2614
FbaI	TGATCA	2 cut(s)	115, 724
FblI	GTMKAC	2 cut(s)	1053, 2405
Fnu4HI	GCNGC	9 cut(s)	157, 700, 703, 930, 1185, 1194, 1829, 2420, 2637
FriOI	GRGCYC	2 cut(s)	546, 2825
Fsp4HI	GCNGC	9 cut(s)	157, 700, 703, 930, 1185, 1194, 1829, 2420, 2637
FspBI	CTAG	6 cut(s)	456, 783, 1920, 2043, 2064, 2857
GlaI	GCGC	2 cut(s)	1455, 2345
GluI	GCNGC	9 cut(s)	157, 700, 703, 930, 1185, 1194, 1829, 2420, 2637
GsaI	CCCAGC	4 cut(s)	252, 1254, 1791, 2730
GsuI	CTGGAG	1 cut(s)	1633
HaeIII	GGCC	3 cut(s)	305, 361, 1674
HapII	CCGG	3 cut(s)	635, 2173, 2735
HhaI	GCGC	2 cut(s)	1456, 2346
Hin6I	GCGC	2 cut(s)	1454, 2344
HinP1I	GCGC	2 cut(s)	1454, 2344
HincII	GTYRAC	2 cut(s)	1033, 1990
HindII	GTYRAC	2 cut(s)	1033, 1990
HindIII	AAGCTT	3 cut(s)	980, 1241, 2665
HinfI	GANTC	7 cut(s)	322, 551, 1064, 1103, 1147, 1388, 1535
HpaI	GTTAAC	2 cut(s)	1033, 1990
HpaII	CCGG	3 cut(s)	635, 2173, 2735
HphI	GGTGA	9 cut(s)	110, 500, 767, 1413, 1854, 1944, 2042, 2244, 2273
Hpy166II	GTNNAC	7 cut(s)	258, 758, 1033, 1054, 1990, 2252, 2406
Hpy8I	GTNNAC	7 cut(s)	258, 758, 1033, 1054, 1990, 2252, 2406
HpyCH4III	ACNGT	8 cut(s)	142, 520, 1622, 2028, 2285, 2444, 2591, 2688
HpyCH4IV	ACGT	1 cut(s)	2263
HpyF3I	CTNAG	8 cut(s)	269, 300, 408, 968, 1460, 1608, 1676, 2152
HpySE526I	ACGT	1 cut(s)	2263
HspAI	GCGC	2 cut(s)	1454, 2344
KflI	GGGWCCC	1 cut(s)	2731
Ksp22I	TGATCA	2 cut(s)	115, 724
KspAI	GTTAAC	2 cut(s)	1033, 1990
LguI	GCTCTTC	3 cut(s)	534, 1203, 2188
LmnI	GCTCC	4 cut(s)	1141, 1300, 1757, 2820
Lsp1109I	GCAGC	7 cut(s)	168, 916, 1171, 1180, 1840, 2406, 2623
LweI	GCATC	8 cut(s)	898, 1343, 1465, 1775, 1840, 2107, 2223, 2406
MaeI	CTAG	6 cut(s)	456, 783, 1920, 2043, 2064, 2857
MaeII	ACGT	1 cut(s)	2263
MaeIII	GTNAC	3 cut(s)	1568, 1657, 2115
MfeI	CAATTG	2 cut(s)	198, 2475
MflI	RGATCY	5 cut(s)	838, 1125, 2057, 2193, 2780
MhlI	GDGCHC	9 cut(s)	208, 260, 409, 546, 777, 952, 1734, 2756, 2825
MlyI	GAGTC	1 cut(s)	1156
MmeI	TCCRAC	5 cut(s)	67, 361, 1359, 1668, 1951
Mph1103I	ATGCAT	4 cut(s)	1207, 1435, 2017, 2512
MroXI	GAANNNNTTC	2 cut(s)	60, 2742
MseI	TTAA	7 cut(s)	399, 807, 1032, 1314, 1560, 1989, 2669
MslI	CAYNNNNRTG	6 cut(s)	765, 1710, 1806, 2378, 2519, 2712
MspA1I	CMGCKG	1 cut(s)	152
MspI	CCGG	3 cut(s)	635, 2173, 2735
MunI	CAATTG	2 cut(s)	198, 2475
Mva1269I	GAATGC	5 cut(s)	1597, 1726, 1789, 2510, 2558
MvaI	CCWGG	7 cut(s)	1260, 1374, 1397, 1911, 2054, 2211, 2775
MvnI	CGCG	2 cut(s)	1131, 1797
NciI	CCSGG	3 cut(s)	636, 2173, 2735
NdeI	CATATG	1 cut(s)	2614
NlaIV	GGNNCC	9 cut(s)	1137, 1291, 1693, 1733, 2732, 2733, 2739, 2755, 2822
NmuCI	GTSAC	2 cut(s)	1657, 2115
NsiI	ATGCAT	4 cut(s)	1207, 1435, 2017, 2512
NspI	RCATGY	3 cut(s)	1939, 2015, 2206
NspV	TTCGAA	2 cut(s)	799, 1101
OliI	CACNNNNGTG	1 cut(s)	1710
PagI	TCATGA	1 cut(s)	1615
PceI	AGGCCT	1 cut(s)	305
PciI	ACATGT	1 cut(s)	2202
PciSI	GCTCTTC	3 cut(s)	534, 1203, 2188
PctI	GAATGC	5 cut(s)	1597, 1726, 1789, 2510, 2558
PdmI	GAANNNNTTC	2 cut(s)	60, 2742
PfeI	GAWTC	6 cut(s)	322, 551, 1064, 1103, 1388, 1535
PflMI	CCANNNNNTGG	3 cut(s)	376, 1851, 2726
PfoI	TCCNGGA	1 cut(s)	1372
PkrI	GCNGC	9 cut(s)	158, 701, 704, 931, 1186, 1195, 1830, 2421, 2638
PleI	GAGTC	1 cut(s)	1155
PpsI	GAGTC	1 cut(s)	1155
PpuMI	RGGWCCY	1 cut(s)	2731
PscI	ACATGT	1 cut(s)	2202
PshBI	ATTAAT	2 cut(s)	399, 807
Psp5II	RGGWCCY	1 cut(s)	2731
Psp6I	CCWGG	7 cut(s)	1258, 1372, 1395, 1909, 2052, 2209, 2773
PspEI	GGTNACC	1 cut(s)	1568
PspFI	CCCAGC	4 cut(s)	248, 1250, 1787, 2726
PspGI	CCWGG	7 cut(s)	1258, 1372, 1395, 1909, 2052, 2209, 2773
PspN4I	GGNNCC	9 cut(s)	1137, 1291, 1693, 1733, 2732, 2733, 2739, 2755, 2822
PspPI	GGNCC	5 cut(s)	632, 1672, 1880, 2717, 2731
PspPPI	RGGWCCY	1 cut(s)	2731
PstI	CTGCAG	1 cut(s)	1189
PstNI	CAGNNNCTG	2 cut(s)	100, 1193
PsuI	RGATCY	5 cut(s)	838, 1125, 2057, 2193, 2780
PvuII	CAGCTG	1 cut(s)	152
RsaI	GTAC	2 cut(s)	1480, 2170
RsaNI	GTAC	2 cut(s)	1479, 2169
RseI	CAYNNNNRTG	6 cut(s)	765, 1710, 1806, 2378, 2519, 2712
SapI	GCTCTTC	3 cut(s)	534, 1203, 2188
SaqAI	TTAA	7 cut(s)	399, 807, 1032, 1314, 1560, 1989, 2669
SatI	GCNGC	9 cut(s)	157, 700, 703, 930, 1185, 1194, 1829, 2420, 2637
Sau96I	GGNCC	5 cut(s)	632, 1672, 1880, 2717, 2731
SchI	GAGTC	1 cut(s)	1156
SduI	GDGCHC	9 cut(s)	208, 260, 409, 546, 777, 952, 1734, 2756, 2825
SfaNI	GCATC	8 cut(s)	898, 1343, 1465, 1775, 1840, 2107, 2223, 2406
SfcI	CTRYAG	2 cut(s)	953, 1185
SfuI	TTCGAA	2 cut(s)	799, 1101
SinI	GGWCC	4 cut(s)	632, 1880, 2717, 2731
SmiMI	CAYNNNNRTG	6 cut(s)	765, 1710, 1806, 2378, 2519, 2712
SmlI	CTYRAG	2 cut(s)	430, 1046
SmoI	CTYRAG	2 cut(s)	430, 1046
SseBI	AGGCCT	1 cut(s)	305
SsiI	CCGC	7 cut(s)	699, 702, 1129, 1511, 1595, 1797, 1960
SspI	AATATT	2 cut(s)	805, 1318
SspMI	CTAG	6 cut(s)	456, 783, 1920, 2043, 2064, 2857
StuI	AGGCCT	1 cut(s)	305
StyI	CCWWGG	2 cut(s)	1005, 1036
TaaI	ACNGT	8 cut(s)	142, 520, 1622, 2028, 2285, 2444, 2591, 2688
TaiI	ACGT	1 cut(s)	2266
TaqI	TCGA	9 cut(s)	165, 799, 998, 1101, 1417, 2231, 2368, 2446, 2785
TaqII	GACCGA	1 cut(s)	1271
TauI	GCSGC	2 cut(s)	702, 705
TfiI	GAWTC	6 cut(s)	322, 551, 1064, 1103, 1388, 1535
Tru1I	TTAA	7 cut(s)	399, 807, 1032, 1314, 1560, 1989, 2669
Tru9I	TTAA	7 cut(s)	399, 807, 1032, 1314, 1560, 1989, 2669
TscAI	CASTG	9 cut(s)	147, 219, 700, 972, 1580, 1657, 2382, 2596, 2797
TseFI	GTSAC	2 cut(s)	1657, 2115
TseI	GCWGC	7 cut(s)	156, 929, 1184, 1193, 1828, 2419, 2636
Tsp45I	GTSAC	2 cut(s)	1657, 2115
TspGWI	ACGGA	2 cut(s)	1764, 2103
TspRI	CASTG	9 cut(s)	147, 219, 700, 972, 1580, 1657, 2382, 2596, 2797
Van91I	CCANNNNNTGG	3 cut(s)	376, 1851, 2726
VneI	GTGCAC	1 cut(s)	256
VpaK11BI	GGWCC	4 cut(s)	632, 1880, 2717, 2731
VspI	ATTAAT	2 cut(s)	399, 807
XagI	CCTNNNNNAGG	1 cut(s)	184
XapI	RAATTY	6 cut(s)	60, 447, 1310, 1858, 2218, 2659
XbaI	TCTAGA	1 cut(s)	782
XceI	RCATGY	3 cut(s)	1939, 2015, 2206
XcmI	CCANNNNNNNNNTGG	3 cut(s)	377, 1435, 2207
XmiI	GTMKAC	2 cut(s)	1053, 2405
XmnI	GAANNNNTTC	2 cut(s)	60, 2742
XspI	CTAG	6 cut(s)	456, 783, 1920, 2043, 2064, 2857
Zsp2I	ATGCAT	4 cut(s)	1207, 1435, 2017, 2512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.