Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0003328

Physical Location & Seq

Genomic Coordinates Reverse (-)

7450378 .. 7459078

Gene Structure 8701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG098000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2727 bp

ATGGGAGTGGATAGAACAGTGCCGACAGCTGGCAGCATATTCGATCCTTCATTACCCTCAAAAAGGTTTTTACCAATTGGGGCACAATCAGTGGATTACTTTGATATGCCACAATCCAATCTGGCTGGGGAGCGCACAGAAAGGCTAAGCATTAGTGGAGGAGTTGCCAATACATCTAAGGCCTCGTGGAAACCTATGAATCATCATCCAAAATTGTGGTCAGACTTGCCCACACGGCCAACATCCCATAGCTTGGTTGGAAGCAAAACTGCTATTAATGGTGCTCAGCATGAAAGCAGTCTGTTCTCAAGCTCATTGTCTGAAATTTTTACTAGAAAATTGAGATTGCTAAAGGGTGATTTTGTATCTCATCAATCTACAAATACTGTTGCTTCCCAACATGAGGAAGAGCCCTTTGAATCGCTTGAAGAAATGGAAGCACAAACCATTGGAAATCTCCTTCCTGATGAAAATGATTTGTTTTCTGGCATGATAGATGGTCCGGGTAAAATTGTGCATGGTAGTAATGGGGATGAATTGGAAGATTTTGATCTTTTTAGCAGTGGTGGCGGCTTGGAATTAGAAGGAGATGATCAAGGGGGTGGTAATTTTTCACTTGTGGGTGAACACCCCTATGGCGAGCACCCTTCTAGAACACTTTTTGTTCGAAATATTAATAGCAATGTTGAAGATTTGGAATTGAAGGATCTTTTTGAGCAATATGGAGATATCCGAACACTTTACACAGCCTGCAAGCATCGTGGGTTTGTTATGATTTCTTATTATGATATAAGGGCTGCCCAAAAAGCGATAAGAGCACTACAGAGTAAGCCACTGAGGCGTAGGAAGCTTGACATACACTATTCGATACCCAAGGACAACCCTTCTGATAAAGATGTTAACCAAGGAACACTTGAGGTATACAATGTTGATTCTTCTGTTTCTGATGATGAGCTTACTAAACTTTTCGAATCTTATGGGGAAATCAAAGAGATCCTCGAGGCTCCAAACAAGAGTCATAACAAGTTGATAGAATTTTATGATGTTAGAGCTGCAGAAGCTGCTCTTCATGCATTGAATACGAGTGAGATTGGTGGGAAGCAGATCAAGCTTGAACCCAGCCATCCAGGGGTTGCCAGAATGGGTTTCGGTCAAGGTTCCAAGCAGGAGCAAGATGAATTTAATATTTGTCATAGTCCATCCGACAACTTGTCAGCAGGATGCAAGGCAACCCTTCATCCTGGAATGGCTAATGAATCTAATCTGGGATTACATTCTTCAATTCGATCACCTTCCAATGCATTTATGGGAAATGCTTTAGCGCATCTGAGTTCAAGTGTTCCGCGTACCTTGCCCTCTCCGATGAGAGTGGTGTCTGCGGACAAAAACTTTTGCCTTCCTGATTCCAATCACTCTCTGAATGAAATTAAGTTTGGTAACCAGTGTGTTCCCAATTTCCATCCGCATTCCCTCCCTGAGTATCATGACAGTTTAGCACATGGTATCACATCCAACTCCAGTGGAGTGACTGGCAATGTGGGCCTTAGAATGACAGAAGGAACCGACAGGAGGCACATTCGTGAAATGAATGCAAATGGGCACCTGATGGAACTGAACGGAGGAGGAGCTTTTGCATCTTCTGGAAATGGGAGTGCTGGGGTTCGCGGACATCATTATGTTTCCAATTCTTATCAGCAGCATCCTTCAAGTCCCATGATGTGGCAGAATTCACCATCATTTATCAATGGTCCTCATGCTCATCGCTTTCCACAAATGCCTGGCTTCCCTAGAACACCTCCTCACATGCTGAATGGGACATCACCTGTCCGCCACCATGTTGGATCAGCACCAGCAGTTAACCCATCCCTTTGGGAAAGACATGCATTTTCAGGACAGTCTCCTGACACTTCTAGTCTTCACCTGGGATCTCCTAGCTTCGCCTGTTTTCCCAGTAGTCCCCAGTTGCATCCTATGGAAGTTCCGTCACGCAACATCTTTTCTCTTGTTGGTGGAAATTGCTCAGACATGAATACAAGTACCCGGCAACGCTCTTCGCAGGAGATCTGCCACATGTTTCCTGGGAGGAATTCAATGATGTCGATGCCTACCTCTTTTGGTTCACCAAATGAACGTGTCAGAAATCTATCTCACCGTAGAAGTGAAGCAAACTCTCATAATGCTGATAGGAAACAATATGAACTTGATATTGAGCGCATATTGCGTGGGGATGACAATCGAACCACACTGATGATAAAGAACATTCCCAACAAGTATACTTCAAAGATGCTGCTTGCAGTAATTGATGAGAACTGTCGAGGAATATATGACTTTATTTATTTGCCAATTGACTTCAAGAACAAATGCAATGTGGGATATGCATTCATCAACATGATTGATCCTCAACAGATTGTTCCATTCTATAAGGCATTCAATGGCAAAAAATGGGAGAAGTTCAACAGTGAAAAGGTTGCAACACTTGCATATGCTCGTATTCAGGGAAAAGCTGCTCTTATTGCCCATTTCCAGAATTCAAGCTTAATGAATGAGGACAAACGGTGCCGCCCTATACTCTTCCACACAGATGGACCCAATGCTGGGGACCCGGAACCCTTTCCAATGGGCACCCACATCCGATCAAGACCAGGAAGATCTCGAACCAGTGGCTATGAGGAAAGCCATAACCAATGGAGCCCATCTTCATCTGCAAATGGAGAGGAAAGTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0008150 GO:0010564 GO:0010638 GO:0033043 GO:0040008 GO:0040020 GO:0045787 GO:0045836 GO:0045927 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051445 GO:0051446 GO:0051726 GO:0051783 GO:0051785 GO:0065007 GO:0090068 GO:0097159 GO:1901363 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 RRM_2

Protein Analysis

908

Amino Acids

100.25

Weight (kDa)

6.42

Isoelectric Point (pI)

54.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	220 - 284	2.8e-11	RNA recognition motif
RRM_1	PF00076	307 - 370	1.2e-07	RNA recognition motif
RRM_2	PF04059	746 - 842	6.6e-54	RNA recognition motif 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07290 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960
fragaria_vesca	FvH4_5g09460
malus_domestica	MD06G1131000.v1.1 MD14G1147600.v1.1
prunus_persica	Prupe.5G142200_v2.0.a1 Prupe.5G142200_v2.0.a1 Prupe.5G142200_v2.0.a1 Prupe.5G142200_v2.0.a1 Prupe.5G142200_v2.0.a1
pyrus_communis	pycom06g12260 pycom14g12230
rosa_chinensis	RchiOBHm_Chr7g0188731
rosa_laevigata	RLG00000004666
rosa_multiflora	Rmu_sc0003854.1_g000006
rosa_roxburghii	Rroxscaffold_3G00266090
rosa_rugosa	Rorug06G0493200.1 Rorug06G0493300.1 Rorug06G0493400 Rorug06G0493400 Rorug06G0493500
rosa_samantha	Rh7AG098000 Rh7BG099400 Rh7CG101200 Rh7DG099800
rosa_wichuraiana	Rw7G008440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	998
AccB1I	GGYRCC	3 cut(s)	1599, 2556, 2621
AccB7I	CCANNNNNTGG	2 cut(s)	253, 1719
AccI	GTMKAC	2 cut(s)	921, 2273
AccII	CGCG	2 cut(s)	1345, 1665
AciI	CCGC	7 cut(s)	570, 1343, 1379, 1463, 1665, 1828, 2560
AclWI	GGATC	6 cut(s)	38, 714, 988, 1849, 1933, 2390
AcoI	YGGCCR	1 cut(s)	236
AcsI	RAATTY	6 cut(s)	324, 1034, 1178, 1726, 2086, 2527
AfaI	GTAC	2 cut(s)	1348, 2038
AfiI	CCNNNNNNNGG	9 cut(s)	29, 63, 253, 403, 1129, 1569, 1719, 2594, 2595
AflIII	ACRYGT	2 cut(s)	2070, 2131
AhdI	GACNNNNNGTC	1 cut(s)	1210
AjnI	CCWGG	6 cut(s)	1126, 1240, 1777, 1920, 2077, 2641
AjuI	GAANNNNNNNTTGG	2 cut(s)	1416, 1448
AleI	CACNNNNGTG	1 cut(s)	1578
Alw21I	GWGCWC	3 cut(s)	286, 645, 820
Alw26I	GTCTC	1 cut(s)	1902
AlwI	GGATC	6 cut(s)	38, 714, 988, 1849, 1933, 2390
AlwNI	CAGNNNCTG	1 cut(s)	1061
Ama87I	CYCGRG	1 cut(s)	998
AoxI	GGCC	3 cut(s)	180, 236, 1540
ApeKI	GCWGC	7 cut(s)	33, 797, 1052, 1061, 1696, 2287, 2504
ApoI	RAATTY	6 cut(s)	324, 1034, 1178, 1726, 2086, 2527
ArsI	GACNNNNNNTTYG	2 cut(s)	203, 235
AseI	ATTAAT	2 cut(s)	276, 675
Asp700I	GAANNNNTTC	1 cut(s)	2610
AspLEI	GCGC	3 cut(s)	135, 1324, 2214
AspS9I	GGNCC	5 cut(s)	500, 1540, 1748, 2585, 2599
AsuC2I	CCSGG	3 cut(s)	504, 2041, 2603
AsuHPI	GGTGA	8 cut(s)	368, 635, 1281, 1722, 1812, 1910, 2112, 2141
AsuII	TTCGAA	2 cut(s)	667, 969
AvaI	CYCGRG	1 cut(s)	998
AvaII	GGWCC	4 cut(s)	500, 1748, 2585, 2599
BaeGI	GKGCMC	3 cut(s)	85, 1602, 2624
BanI	GGYRCC	3 cut(s)	1599, 2556, 2621
BanII	GRGCYC	2 cut(s)	414, 2693
BauI	CACGAG	1 cut(s)	184
BbsI	GAAGAC	1 cut(s)	1907
Bbv12I	GWGCWC	3 cut(s)	286, 645, 820
BbvI	GCAGC	7 cut(s)	45, 784, 1039, 1048, 1708, 2274, 2491
BccI	CCATC	9 cut(s)	491, 1131, 1207, 1467, 1600, 1741, 1870, 2576, 2701
BceAI	ACGGC	1 cut(s)	251
BcgI	CGANNNNNNTGC	2 cut(s)	22, 56
BciT130I	CCWGG	6 cut(s)	1128, 1242, 1779, 1922, 2079, 2643
BclI	TGATCA	1 cut(s)	592
BcnI	CCSGG	3 cut(s)	504, 2041, 2603
BcoDI	GTCTC	1 cut(s)	1902
BfaI	CTAG	6 cut(s)	333, 651, 1788, 1911, 1932, 2725
BfmI	CTRYAG	2 cut(s)	821, 1053
BglI	GCCNNNNNGGC	2 cut(s)	235, 838
BglII	AGATCT	2 cut(s)	2061, 2648
BisI	GCNGC	9 cut(s)	34, 571, 798, 1053, 1062, 1697, 2288, 2505, 2560
BlpI	GCTNAGC	2 cut(s)	146, 285
BlsI	GCNGC	9 cut(s)	35, 572, 799, 1054, 1063, 1698, 2289, 2506, 2561
Bme1390I	CCNGG	9 cut(s)	504, 1128, 1242, 1779, 1922, 2041, 2079, 2603, 2643
Bme18I	GGWCC	4 cut(s)	500, 1748, 2585, 2599
BmeRI	GACNNNNNGTC	1 cut(s)	1210
BmeT110I	CYCGRG	1 cut(s)	998
BmgT120I	GGNCC	5 cut(s)	500, 1540, 1748, 2585, 2599
BmrFI	CCNGG	9 cut(s)	504, 1128, 1242, 1779, 1922, 2041, 2079, 2603, 2643
BmrI	ACTGGG	2 cut(s)	1944, 1954
BmsI	GCATC	8 cut(s)	766, 1211, 1333, 1643, 1708, 1975, 2091, 2274
BmuI	ACTGGG	2 cut(s)	1944, 1954
BpiI	GAAGAC	1 cut(s)	1907
BpmI	CTGGAG	1 cut(s)	1501
Bpu1102I	GCTNAGC	2 cut(s)	146, 285
Bpu14I	TTCGAA	2 cut(s)	667, 969
BpuEI	CTTGAG	2 cut(s)	292, 935
BpuMI	CCSGG	3 cut(s)	504, 2041, 2603
BsaBI	GATNNNNATC	3 cut(s)	549, 1407, 2232
BsaJI	CCNNGG	5 cut(s)	873, 904, 1127, 1921, 2078
Bsc4I	CCNNNNNNNGG	9 cut(s)	29, 63, 253, 403, 1129, 1569, 1719, 2594, 2595
Bse1I	ACTGG	6 cut(s)	1441, 1518, 1534, 1950, 1960, 2658
Bse3DI	GCAATG	3 cut(s)	688, 1540, 2371
Bse8I	GATNNNNATC	3 cut(s)	549, 1407, 2232
BseBI	CCWGG	6 cut(s)	1128, 1242, 1779, 1922, 2079, 2643
BseDI	CCNNGG	5 cut(s)	873, 904, 1127, 1921, 2078
BseJI	GATNNNNATC	3 cut(s)	549, 1407, 2232
BseLI	CCNNNNNNNGG	9 cut(s)	29, 63, 253, 403, 1129, 1569, 1719, 2594, 2595
BseMI	GCAATG	3 cut(s)	688, 1540, 2371
BseMII	CTCAG	5 cut(s)	299, 827, 1319, 1467, 2034
BseNI	ACTGG	6 cut(s)	1441, 1518, 1534, 1950, 1960, 2658
BseRI	GAGGAG	4 cut(s)	174, 1635, 1638, 1788
BseSI	GKGCMC	3 cut(s)	85, 1602, 2624
BseXI	GCAGC	7 cut(s)	45, 784, 1039, 1048, 1708, 2274, 2491
BseYI	CCCAGC	4 cut(s)	125, 1118, 1655, 2594
Bsh1236I	CGCG	2 cut(s)	1345, 1665
BshFI	GGCC	3 cut(s)	182, 238, 1542
BshNI	GGYRCC	3 cut(s)	1599, 2556, 2621
BsiHKAI	GWGCWC	3 cut(s)	286, 645, 820
BsiHKCI	CYCGRG	1 cut(s)	998
BsiSI	CCGG	3 cut(s)	503, 2041, 2603
BslFI	GGGAC	4 cut(s)	1695, 1828, 1941, 2612
BslI	CCNNNNNNNGG	9 cut(s)	29, 63, 253, 403, 1129, 1569, 1719, 2594, 2595
BsmAI	GTCTC	1 cut(s)	1902
BsmFI	GGGAC	4 cut(s)	1695, 1828, 1941, 2612
BsmI	GAATGC	4 cut(s)	1465, 1594, 2378, 2426
BsnI	GGCC	3 cut(s)	182, 238, 1542
BsoBI	CYCGRG	1 cut(s)	998
Bsp119I	TTCGAA	2 cut(s)	667, 969
Bsp1286I	GDGCHC	8 cut(s)	85, 286, 414, 645, 820, 1602, 2624, 2693
Bsp1720I	GCTNAGC	2 cut(s)	146, 285
BspACI	CCGC	7 cut(s)	570, 1343, 1379, 1463, 1665, 1828, 2560
BspANI	GGCC	3 cut(s)	182, 238, 1542
BspCNI	CTCAG	5 cut(s)	298, 828, 1320, 1468, 2033
BspFNI	CGCG	2 cut(s)	1345, 1665
BspHI	TCATGA	1 cut(s)	1483
BspMAI	CTGCAG	1 cut(s)	1057
BspPI	GGATC	6 cut(s)	38, 714, 988, 1849, 1933, 2390
BspQI	GCTCTTC	3 cut(s)	402, 1071, 2056
BspT104I	TTCGAA	2 cut(s)	667, 969
BspT107I	GGYRCC	3 cut(s)	1599, 2556, 2621
BsrDI	GCAATG	3 cut(s)	688, 1540, 2371
BsrI	ACTGG	6 cut(s)	1441, 1518, 1534, 1950, 1960, 2658
BssECI	CCNNGG	5 cut(s)	873, 904, 1127, 1921, 2078
BssNAI	GTATAC	2 cut(s)	922, 2274
BssSI	CACGAG	1 cut(s)	184
BssT1I	CCWWGG	2 cut(s)	873, 904
Bst1107I	GTATAC	2 cut(s)	922, 2274
Bst2BI	CACGAG	1 cut(s)	184
Bst2UI	CCWGG	6 cut(s)	1128, 1242, 1779, 1922, 2079, 2643
Bst4CI	ACNGT	8 cut(s)	19, 388, 1490, 1896, 2153, 2312, 2459, 2556
Bst6I	CTCTTC	4 cut(s)	402, 1071, 2056, 2576
BstAPI	GCANNNNNTGC	2 cut(s)	1061, 2477
BstBI	TTCGAA	2 cut(s)	667, 969
BstC8I	GCNNGC	5 cut(s)	31, 641, 751, 755, 2292
BstDEI	CTNAG	8 cut(s)	146, 177, 285, 836, 1328, 1476, 1544, 2020
BstEII	GGTNACC	1 cut(s)	1436
BstENI	CCTNNNNNAGG	1 cut(s)	61
BstFNI	CGCG	2 cut(s)	1345, 1665
BstHHI	GCGC	3 cut(s)	135, 1324, 2214
BstMAI	GTCTC	1 cut(s)	1902
BstNI	CCWGG	6 cut(s)	1128, 1242, 1779, 1922, 2079, 2643
BstNSI	RCATGY	3 cut(s)	1807, 1883, 2074
BstPI	GGTNACC	1 cut(s)	1436
BstSCI	CCNGG	9 cut(s)	502, 1126, 1240, 1777, 1920, 2039, 2077, 2601, 2641
BstSFI	CTRYAG	2 cut(s)	821, 1053
BstSLI	GKGCMC	3 cut(s)	85, 1602, 2624
BstUI	CGCG	2 cut(s)	1345, 1665
BstV1I	GCAGC	7 cut(s)	45, 784, 1039, 1048, 1708, 2274, 2491
BstV2I	GAAGAC	1 cut(s)	1907
BstX2I	RGATCY	5 cut(s)	706, 993, 1925, 2061, 2648
BstXI	CCANNNNNNTGG	4 cut(s)	216, 1838, 1869, 2582
BstYI	RGATCY	5 cut(s)	706, 993, 1925, 2061, 2648
BstZ17I	GTATAC	2 cut(s)	922, 2274
BsuRI	GGCC	3 cut(s)	182, 238, 1542
BtgZI	GCGATG	1 cut(s)	1745
BtsI	GCAGTG	1 cut(s)	568
BtsIMutI	CAGTG	9 cut(s)	24, 96, 568, 833, 1448, 1525, 2243, 2464, 2665
Cac8I	GCNNGC	5 cut(s)	31, 641, 751, 755, 2292
CaiI	CAGNNNCTG	1 cut(s)	1061
CciI	TCATGA	1 cut(s)	1483
CfoI	GCGC	3 cut(s)	135, 1324, 2214
Cfr13I	GGNCC	5 cut(s)	500, 1540, 1748, 2585, 2599
Csp6I	GTAC	2 cut(s)	1347, 2037
CspCI	CAANNNNNGTGG	4 cut(s)	742, 777, 1501, 1536
CviQI	GTAC	2 cut(s)	1347, 2037
DdeI	CTNAG	8 cut(s)	146, 177, 285, 836, 1328, 1476, 1544, 2020
DriI	GACNNNNNGTC	1 cut(s)	1210
EaeI	YGGCCR	1 cut(s)	236
Eam1104I	CTCTTC	4 cut(s)	402, 1071, 2056, 2576
Eam1105I	GACNNNNNGTC	1 cut(s)	1210
EarI	CTCTTC	4 cut(s)	402, 1071, 2056, 2576
EciI	GGCGGA	1 cut(s)	1817
Eco130I	CCWWGG	2 cut(s)	873, 904
Eco147I	AGGCCT	1 cut(s)	182
Eco24I	GRGCYC	2 cut(s)	414, 2693
Eco32I	GATATC	1 cut(s)	730
Eco47I	GGWCC	4 cut(s)	500, 1748, 2585, 2599
Eco88I	CYCGRG	1 cut(s)	998
Eco91I	GGTNACC	1 cut(s)	1436
EcoNI	CCTNNNNNAGG	1 cut(s)	61
EcoO109I	RGGNCCY	1 cut(s)	2599
EcoO65I	GGTNACC	1 cut(s)	1436
EcoRI	GAATTC	3 cut(s)	1726, 2086, 2527
EcoRII	CCWGG	6 cut(s)	1126, 1240, 1777, 1920, 2077, 2641
EcoRV	GATATC	1 cut(s)	730
EcoT14I	CCWWGG	2 cut(s)	873, 904
EcoT22I	ATGCAT	4 cut(s)	1075, 1303, 1885, 2380
EcoT38I	GRGCYC	2 cut(s)	414, 2693
ErhI	CCWWGG	2 cut(s)	873, 904
FalI	AAGNNNNNCTT	6 cut(s)	897, 929, 1050, 1082, 2493, 2525
FaqI	GGGAC	4 cut(s)	1695, 1828, 1941, 2612
FauNDI	CATATG	1 cut(s)	2482
FbaI	TGATCA	1 cut(s)	592
FblI	GTMKAC	2 cut(s)	921, 2273
Fnu4HI	GCNGC	9 cut(s)	34, 571, 798, 1053, 1062, 1697, 2288, 2505, 2560
FriOI	GRGCYC	2 cut(s)	414, 2693
Fsp4HI	GCNGC	9 cut(s)	34, 571, 798, 1053, 1062, 1697, 2288, 2505, 2560
FspBI	CTAG	6 cut(s)	333, 651, 1788, 1911, 1932, 2725
GlaI	GCGC	3 cut(s)	134, 1323, 2213
GluI	GCNGC	9 cut(s)	34, 571, 798, 1053, 1062, 1697, 2288, 2505, 2560
GsaI	CCCAGC	4 cut(s)	129, 1122, 1659, 2598
GsuI	CTGGAG	1 cut(s)	1501
HaeIII	GGCC	3 cut(s)	182, 238, 1542
HapII	CCGG	3 cut(s)	503, 2041, 2603
HhaI	GCGC	3 cut(s)	135, 1324, 2214
Hin6I	GCGC	3 cut(s)	133, 1322, 2212
HinP1I	GCGC	3 cut(s)	133, 1322, 2212
HincII	GTYRAC	2 cut(s)	901, 1858
HindII	GTYRAC	2 cut(s)	901, 1858
HindIII	AAGCTT	3 cut(s)	848, 1109, 2533
HinfI	GANTC	7 cut(s)	199, 419, 932, 971, 1015, 1256, 1403
HpaI	GTTAAC	2 cut(s)	901, 1858
HpaII	CCGG	3 cut(s)	503, 2041, 2603
HphI	GGTGA	8 cut(s)	368, 635, 1281, 1722, 1812, 1910, 2112, 2141
Hpy166II	GTNNAC	6 cut(s)	626, 901, 922, 1858, 2120, 2274
Hpy8I	GTNNAC	6 cut(s)	626, 901, 922, 1858, 2120, 2274
HpyCH4III	ACNGT	8 cut(s)	19, 388, 1490, 1896, 2153, 2312, 2459, 2556
HpyCH4IV	ACGT	1 cut(s)	2131
HpyF3I	CTNAG	8 cut(s)	146, 177, 285, 836, 1328, 1476, 1544, 2020
HpySE526I	ACGT	1 cut(s)	2131
HspAI	GCGC	3 cut(s)	133, 1322, 2212
KflI	GGGWCCC	1 cut(s)	2599
Ksp22I	TGATCA	1 cut(s)	592
KspAI	GTTAAC	2 cut(s)	901, 1858
LguI	GCTCTTC	3 cut(s)	402, 1071, 2056
LmnI	GCTCC	5 cut(s)	130, 1009, 1168, 1625, 2688
Lsp1109I	GCAGC	7 cut(s)	45, 784, 1039, 1048, 1708, 2274, 2491
LweI	GCATC	8 cut(s)	766, 1211, 1333, 1643, 1708, 1975, 2091, 2274
MaeI	CTAG	6 cut(s)	333, 651, 1788, 1911, 1932, 2725
MaeII	ACGT	1 cut(s)	2131
MaeIII	GTNAC	3 cut(s)	1436, 1525, 1983
MfeI	CAATTG	2 cut(s)	75, 2343
MflI	RGATCY	5 cut(s)	706, 993, 1925, 2061, 2648
MhlI	GDGCHC	8 cut(s)	85, 286, 414, 645, 820, 1602, 2624, 2693
MlyI	GAGTC	1 cut(s)	1024
MmeI	TCCRAC	4 cut(s)	238, 1227, 1536, 1819
Mph1103I	ATGCAT	4 cut(s)	1075, 1303, 1885, 2380
MroXI	GAANNNNTTC	1 cut(s)	2610
MseI	TTAA	7 cut(s)	276, 675, 900, 1182, 1428, 1857, 2537
MslI	CAYNNNNRTG	6 cut(s)	633, 1578, 1674, 2246, 2387, 2580
MspA1I	CMGCKG	1 cut(s)	29
MspI	CCGG	3 cut(s)	503, 2041, 2603
MspR9I	CCNGG	9 cut(s)	504, 1128, 1242, 1779, 1922, 2041, 2079, 2603, 2643
MunI	CAATTG	2 cut(s)	75, 2343
Mva1269I	GAATGC	4 cut(s)	1465, 1594, 2378, 2426
MvaI	CCWGG	6 cut(s)	1128, 1242, 1779, 1922, 2079, 2643
MvnI	CGCG	2 cut(s)	1345, 1665
NciI	CCSGG	3 cut(s)	504, 2041, 2603
NdeI	CATATG	1 cut(s)	2482
NmuCI	GTSAC	2 cut(s)	1525, 1983
NsiI	ATGCAT	4 cut(s)	1075, 1303, 1885, 2380
NspI	RCATGY	3 cut(s)	1807, 1883, 2074
NspV	TTCGAA	2 cut(s)	667, 969
OliI	CACNNNNGTG	1 cut(s)	1578
PaeR7I	CTCGAG	1 cut(s)	998
PagI	TCATGA	1 cut(s)	1483
PceI	AGGCCT	1 cut(s)	182
PciI	ACATGT	1 cut(s)	2070
PciSI	GCTCTTC	3 cut(s)	402, 1071, 2056
PctI	GAATGC	4 cut(s)	1465, 1594, 2378, 2426
PdmI	GAANNNNTTC	1 cut(s)	2610
PfeI	GAWTC	6 cut(s)	199, 419, 932, 971, 1256, 1403
PflMI	CCANNNNNTGG	2 cut(s)	253, 1719
PfoI	TCCNGGA	1 cut(s)	1240
PkrI	GCNGC	9 cut(s)	35, 572, 799, 1054, 1063, 1698, 2289, 2506, 2561
PleI	GAGTC	1 cut(s)	1023
PpsI	GAGTC	1 cut(s)	1023
PpuMI	RGGWCCY	1 cut(s)	2599
PscI	ACATGT	1 cut(s)	2070
PshBI	ATTAAT	2 cut(s)	276, 675
Psp5II	RGGWCCY	1 cut(s)	2599
Psp6I	CCWGG	6 cut(s)	1126, 1240, 1777, 1920, 2077, 2641
PspEI	GGTNACC	1 cut(s)	1436
PspFI	CCCAGC	4 cut(s)	125, 1118, 1655, 2594
PspGI	CCWGG	6 cut(s)	1126, 1240, 1777, 1920, 2077, 2641
PspPI	GGNCC	5 cut(s)	500, 1540, 1748, 2585, 2599
PspPPI	RGGWCCY	1 cut(s)	2599
PspXI	VCTCGAGB	1 cut(s)	998
PstI	CTGCAG	1 cut(s)	1057
PstNI	CAGNNNCTG	1 cut(s)	1061
PsuI	RGATCY	5 cut(s)	706, 993, 1925, 2061, 2648
PvuII	CAGCTG	1 cut(s)	29
RsaI	GTAC	2 cut(s)	1348, 2038
RsaNI	GTAC	2 cut(s)	1347, 2037
RseI	CAYNNNNRTG	6 cut(s)	633, 1578, 1674, 2246, 2387, 2580
SapI	GCTCTTC	3 cut(s)	402, 1071, 2056
SaqAI	TTAA	7 cut(s)	276, 675, 900, 1182, 1428, 1857, 2537
SatI	GCNGC	9 cut(s)	34, 571, 798, 1053, 1062, 1697, 2288, 2505, 2560
Sau96I	GGNCC	5 cut(s)	500, 1540, 1748, 2585, 2599
SchI	GAGTC	1 cut(s)	1024
ScrFI	CCNGG	9 cut(s)	504, 1128, 1242, 1779, 1922, 2041, 2079, 2603, 2643
SduI	GDGCHC	8 cut(s)	85, 286, 414, 645, 820, 1602, 2624, 2693
SfaNI	GCATC	8 cut(s)	766, 1211, 1333, 1643, 1708, 1975, 2091, 2274
SfcI	CTRYAG	2 cut(s)	821, 1053
Sfr274I	CTCGAG	1 cut(s)	998
SfuI	TTCGAA	2 cut(s)	667, 969
SinI	GGWCC	4 cut(s)	500, 1748, 2585, 2599
SlaI	CTCGAG	1 cut(s)	998
SmiMI	CAYNNNNRTG	6 cut(s)	633, 1578, 1674, 2246, 2387, 2580
SmlI	CTYRAG	3 cut(s)	307, 914, 998
SmoI	CTYRAG	3 cut(s)	307, 914, 998
SseBI	AGGCCT	1 cut(s)	182
SsiI	CCGC	7 cut(s)	570, 1343, 1379, 1463, 1665, 1828, 2560
SspI	AATATT	2 cut(s)	673, 1186
SspMI	CTAG	6 cut(s)	333, 651, 1788, 1911, 1932, 2725
StuI	AGGCCT	1 cut(s)	182
StyD4I	CCNGG	9 cut(s)	502, 1126, 1240, 1777, 1920, 2039, 2077, 2601, 2641
StyI	CCWWGG	2 cut(s)	873, 904
TaaI	ACNGT	8 cut(s)	19, 388, 1490, 1896, 2153, 2312, 2459, 2556
TaiI	ACGT	1 cut(s)	2134
TaqII	GACCGA	1 cut(s)	1139
TauI	GCSGC	2 cut(s)	573, 2562
TfiI	GAWTC	6 cut(s)	199, 419, 932, 971, 1256, 1403
Tru1I	TTAA	7 cut(s)	276, 675, 900, 1182, 1428, 1857, 2537
Tru9I	TTAA	7 cut(s)	276, 675, 900, 1182, 1428, 1857, 2537
TscAI	CASTG	9 cut(s)	24, 96, 568, 840, 1448, 1525, 2250, 2464, 2665
TseFI	GTSAC	2 cut(s)	1525, 1983
TseI	GCWGC	7 cut(s)	33, 797, 1052, 1061, 1696, 2287, 2504
Tsp45I	GTSAC	2 cut(s)	1525, 1983
TspGWI	ACGGA	2 cut(s)	1632, 1971
TspRI	CASTG	9 cut(s)	24, 96, 568, 840, 1448, 1525, 2250, 2464, 2665
Van91I	CCANNNNNTGG	2 cut(s)	253, 1719
VpaK11BI	GGWCC	4 cut(s)	500, 1748, 2585, 2599
VspI	ATTAAT	2 cut(s)	276, 675
XagI	CCTNNNNNAGG	1 cut(s)	61
XapI	RAATTY	6 cut(s)	324, 1034, 1178, 1726, 2086, 2527
XbaI	TCTAGA	1 cut(s)	650
XceI	RCATGY	3 cut(s)	1807, 1883, 2074
XcmI	CCANNNNNNNNNTGG	3 cut(s)	254, 1303, 2075
XhoI	CTCGAG	1 cut(s)	998
XmiI	GTMKAC	2 cut(s)	921, 2273
XmnI	GAANNNNTTC	1 cut(s)	2610
XspI	CTAG	6 cut(s)	333, 651, 1788, 1911, 1932, 2725
Zsp2I	ATGCAT	4 cut(s)	1075, 1303, 1885, 2380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.