Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0003328

Physical Location & Seq

Genomic Coordinates Reverse (-)

24030636 .. 24038575

Gene Structure 7940 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1147600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2901 bp

ATGCCATTTGAAATAATGGATCAAAGGGGTGTATCTGTCTCTTCTCACTTCTTTGAAGAAATCCCTTTTCCTTCTGAGAGACAAGTCGGATTTCAGAAGCTGAAAACCATGCCCGATTACCAAGCGGGAGTCAGTGGAATGGTACCGACACCTGGCAGCATGTTGGGTTCTTCAATGCCATCAAAAAAGTATTTACCAAATGGGGCACAGTCGGTGGATTACTTGGATCCACCACAATCCAATCTGGCTGGGGAGCAAATTGGTGAAGGAATTCCCAACATCTCCAAGGTCTTGTTGAAACCTATGGATCACCAACCAAAATTGTGGTCAGACTTGTCCGCAAAGCCAACACCTTATAGCTCAGTTGGCGGGAAAACTCTTAATCCTGGCACCCAGCATGAAAGTAGTCTGTTCTCAAGCTCTTTGTCCGAAACTTTTAGCAAAAAGTTGCGATTACTGAAGAATGATTTTATATCTCATCAGTCTACTCATAACGGTGCCTCCCAACATGAGGAAGAACCCATTGAATCTCTTGAAGAAATTGAGGCGCAAACAATTGGAAATCTCCTTCCAGATGAAAATGACTTGTTTTCTGGCATGACAGATGAGCCGGGTTATAAGGCTTATACTAATATTGGTGATGGATTTGAAGATTTTGATCTCTTTAGCAGCGGCGGTGGCTTGGAAATGGAAGGAGATGATCAAGGGGCTTATAATAGCTCAATTGCGGGTGAACACCCTTATGGCGAACACCCTTCCCGTACACTCTTTGTTCGCAATATTAATAGCAACATTGAAGATTTGGAATTGAAGGCTCTTTTTGAGCGATATGGAGATATCCGGGCACTTTACACTGCCTGCAAGCATCGTGGGTTTGTTATGATTTCTTATTATGATATAAGGGCTGCCCAAAATGCACTAAGAGCACTTCAAAGTAACACACTGAGGCATAGGAAGCTTGACATACATTATTCAATACCCAAGGACAATCCTTCGGATAAAGATACTAACCAAGGAACGCTAGTATTATTCAACCTTGATTCTTCTGTTTCTAGTGACGAGCTTTCTAAAATTTTTGGATCTTATGGAGAAATTAAAGAAATCCGTGAGACTCCACACAAGCCTCATAACAAGTTCATAGAGTTTTATGATGTTAGAGCCGCAGAAGCTGCTCTCCATGCGTTGAATAGGAGTGAGATTGGAGGAAAGCAGATCAAGCTTGAGCCGAGCCGTCCAGGGGGCACAAGGAGGGGTTTGGCTCAAGTTTCCGAGCAGGACCGGGATGAATTCAAATTTTGTAATGGTTTGTCTGACAATTTATCAACAGGCACCAAGGCGACGCTTCATCCTGGAATAGTCACATCAAGCTGCATGGTTAATGGATCTAGCCTGGGCTTACATTCTGCAGTCCGTTCACCTGTGAGTGCATTTATTGAAAACGCTTTATCTCATCAGAGTTCAAGTGTTCCAGATGCCTTTCCCGCTCCAGTGACATTGGCATCTATAGGGAAAAAGTTTAGCCTTCGTGACACCGAACAGTCTCTGGATGACATGAGTTTTGGTAATCAGAGTGCTCCCGGCATACATCCTCATTCACTTCCTGAGTATAATGACAGTTTAGCCCATGGTATTCCATGCAACACTTCTGGTGCTATCAGAATCATAAATGGCAATCTGGGACTTAGAATGAGAGAAGGAACAGACCGAAGATCCACTGTCAGTGCAAATGGTCACCTAGTGGAACTGAACGGAGCTTTTGGATCTCCTGGAAATGGGAGCTGCCCGGTTCATGCTCATCCCTATCTTTGGAATAACTCCAACTCATACCAGCAGCATCCTTCAAGTCCCATGATGTGGCAGAATTCACCATCATTTATCAGTGGTCATAGTGCGCATCGCTTTGCCCAAATGCCAGGATTCCACAGGACACCACCTCATATGCTGAGTGGTACATCGCCTGTGCACCACCATGTAGGATCAGCTCCAGCTGTTAATCCTTCCATTTGGGAAAAGCATGCCTTTTCAGGGGAGTCTCCTGACACTTCTAATCTTCACTTGGGTTCTCTTGGCTTTGCACGTTTTGCTGGTAGTCCACAGATGCATCCTATGGAGATTTCTTCACAAAACCTCTTTTCTCTTACTGGTGGAAATTTCTTGGACATGACTACCAGTACCCGGCAGCGCTCTTCAGAGGAGATGGGCCACATGTTTCCTGGTAGGAATTCGATGAGTTCAATGCCTACCTCTTTTGATTCTCAAAATGAACGTGGTGTTAGAAACCTGTCTCACCGAAGAAATGAAGCAAATTCTAACAATGCTGATAAGAGACAATATGAGCTTGATGTTGAACGTATACTCCGTGGGGAAGACAGACGCACCACATTGATGATCAAGAACATTCCCAACAAATATACTTCAAAGATGCTTCTTGCTGCAATAGATGAGCAGTGTCGAGGAGTTTATGACTTTCTTTATTTGCCAATTGACTTCAAGAACAAATGCAATGTGGGATATGCGTTCATCAACATGATCGATCCTCATCAGATTGTTCCGTTCTATAAGGCATTCAATGGAAAAAAATGGGAGAAGTTTAACAGTGAAAAGGTGGCATCACTTGCATATGCTCGTATTCAGGGTAAAGCTGCTCTTATTGCGCATTTCCAGAACTCAAGCTTAATGAACGAGGACAAACGCTGCCGTCCCATACTTTTCCACACAGAGGGTCCAAATGCTGGTGATCCGGAACCCTTCCCCATGGGTACCAACATCAGATCAAGACCAGGAAGACCTCGAACAGTTGGCTACGATGATAACCATAATCACGGGAATCCTTCAGCAACTGCAAGCGGAGAGGAAAATTCCAAGGAATCCGACCGAGACTTGTTCTACCAAGATTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0008150 GO:0010564 GO:0010638 GO:0033043 GO:0040008 GO:0040020 GO:0045787 GO:0045836 GO:0045927 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051445 GO:0051446 GO:0051726 GO:0051783 GO:0051785 GO:0065007 GO:0090068 GO:0097159 GO:1901363 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 RRM_2

Protein Analysis

967

Amino Acids

106.75

Weight (kDa)

6.19

Isoelectric Point (pI)

51.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	256 - 320	2.2e-09	RNA recognition motif
RRM_1	PF00076	342 - 406	2.4e-09	RNA recognition motif
RRM_2	PF04059	792 - 888	7.8e-55	RNA recognition motif 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07290 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960 AT5G61960
fragaria_vesca	FvH4_5g09460
malus_domestica	MD06G1131000.v1.1 MD14G1147600.v1.1
prunus_persica	Prupe.5G142200_v2.0.a1 Prupe.5G142200_v2.0.a1 Prupe.5G142200_v2.0.a1 Prupe.5G142200_v2.0.a1 Prupe.5G142200_v2.0.a1
pyrus_communis	pycom06g12260 pycom14g12230
rosa_chinensis	RchiOBHm_Chr7g0188731
rosa_laevigata	RLG00000004666
rosa_multiflora	Rmu_sc0003854.1_g000006
rosa_roxburghii	Rroxscaffold_3G00266090
rosa_rugosa	Rorug06G0493200.1 Rorug06G0493300.1 Rorug06G0493400 Rorug06G0493400 Rorug06G0493500
rosa_samantha	Rh7AG098000 Rh7BG099400 Rh7CG101200 Rh7DG099800
rosa_wichuraiana	Rw7G008440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	618, 714
Acc16I	TGCGCA	2 cut(s)	1893, 2655
Acc65I	GGTACC	2 cut(s)	142, 2759
AccB1I	GGYRCC	5 cut(s)	142, 389, 497, 1328, 2759
AccB7I	CCANNNNNTGG	2 cut(s)	1854, 2732
AccBSI	CCGCTC	1 cut(s)	1484
AccI	GTMKAC	2 cut(s)	485, 2353
AccIII	TCCGGA	1 cut(s)	2740
AciI	CCGC	9 cut(s)	125, 339, 369, 672, 675, 728, 1161, 1482, 2847
AcsI	RAATTY	9 cut(s)	270, 1071, 1286, 1292, 1861, 2149, 2221, 2305, 2857
AcuI	CTGAAG	3 cut(s)	479, 2172, 2817
AdeI	CACNNNGTG	1 cut(s)	1738
AfaI	GTAC	5 cut(s)	144, 763, 1951, 2173, 2761
AfeI	AGCGCT	1 cut(s)	2183
AflIII	ACRYGT	1 cut(s)	2205
AjnI	CCWGG	9 cut(s)	151, 385, 1234, 1348, 1389, 1765, 1912, 2212, 2779
AloI	GAACNNNNNNTCC	2 cut(s)	2340, 2372
Alw21I	GWGCWC	3 cut(s)	928, 1576, 1965
Alw26I	GTCTC	8 cut(s)	43, 73, 1103, 1545, 2037, 2289, 2320, 2871
Alw44I	GTGCAC	1 cut(s)	1961
AlwNI	CAGNNNCTG	4 cut(s)	100, 1169, 1543, 2840
Aor13HI	TCCGGA	1 cut(s)	2740
Aor51HI	AGCGCT	1 cut(s)	2183
AoxI	GGCC	1 cut(s)	2200
ApaLI	GTGCAC	1 cut(s)	1961
ApoI	RAATTY	9 cut(s)	270, 1071, 1286, 1292, 1861, 2149, 2221, 2305, 2857
ArsI	GACNNNNNNTTYG	4 cut(s)	311, 343, 1541, 1573
AseI	ATTAAT	1 cut(s)	783
Asp700I	GAANNNNTTC	1 cut(s)	270
Asp718I	GGTACC	2 cut(s)	142, 2759
AspLEI	GCGC	4 cut(s)	550, 1894, 2184, 2656
AspS9I	GGNCC	3 cut(s)	1276, 2200, 2723
AsuC2I	CCSGG	6 cut(s)	612, 842, 1280, 1578, 1784, 2176
AsuHPI	GGTGA	9 cut(s)	275, 302, 650, 743, 1407, 1724, 1857, 2279, 2747
AvaII	GGWCC	2 cut(s)	1276, 2723
BaeGI	GKGCMC	4 cut(s)	208, 847, 1244, 1965
BamHI	GGATCC	1 cut(s)	226
BanI	GGYRCC	5 cut(s)	142, 389, 497, 1328, 2759
BbsI	GAAGAC	2 cut(s)	2373, 2791
Bbv12I	GWGCWC	3 cut(s)	928, 1576, 1965
BccI	CCATC	4 cut(s)	187, 635, 1876, 2191
BceAI	ACGGC	2 cut(s)	1215, 2682
BciT130I	CCWGG	9 cut(s)	153, 387, 1236, 1350, 1391, 1767, 1914, 2214, 2781
BclI	TGATCA	2 cut(s)	700, 2388
BcnI	CCSGG	6 cut(s)	612, 842, 1280, 1578, 1784, 2176
BcoDI	GTCTC	8 cut(s)	43, 73, 1103, 1545, 2037, 2289, 2320, 2871
BfaI	CTAG	4 cut(s)	1022, 1053, 1386, 1736
BfmI	CTRYAG	2 cut(s)	1404, 1503
BfoI	RGCGCY	1 cut(s)	2185
Bme18I	GGWCC	2 cut(s)	1276, 2723
BmgT120I	GGNCC	3 cut(s)	1276, 2200, 2723
BmiI	GGNNCC	8 cut(s)	144, 228, 391, 499, 1330, 2724, 2745, 2761
BmsI	GCATC	9 cut(s)	874, 1462, 1508, 1843, 1903, 2088, 2110, 2412, 2618
BpiI	GAAGAC	2 cut(s)	2373, 2791
BpmI	CTGGAG	2 cut(s)	1470, 1968
BpuEI	CTTGAG	4 cut(s)	400, 1241, 1245, 2653
BpuMI	CCSGG	6 cut(s)	612, 842, 1280, 1578, 1784, 2176
Bsa29I	ATCGAT	1 cut(s)	2532
BsaBI	GATNNNNATC	2 cut(s)	657, 2538
BsaWI	WCCGGW	1 cut(s)	2740
BsaXI	ACNNNNNCTCC	4 cut(s)	485, 515, 2340, 2370
Bse1I	ACTGG	3 cut(s)	1487, 2146, 2169
Bse3DI	GCAATG	1 cut(s)	2509
Bse8I	GATNNNNATC	2 cut(s)	657, 2538
BseAI	TCCGGA	1 cut(s)	2740
BseBI	CCWGG	9 cut(s)	153, 387, 1236, 1350, 1391, 1767, 1914, 2214, 2781
BseCI	ATCGAT	1 cut(s)	2532
BseGI	GGATG	7 cut(s)	1288, 1345, 1552, 1585, 1795, 1834, 2101
BseJI	GATNNNNATC	2 cut(s)	657, 2538
BseMI	GCAATG	1 cut(s)	2509
BseMII	CTCAG	5 cut(s)	66, 375, 935, 1593, 1934
BseNI	ACTGG	3 cut(s)	1487, 2146, 2169
BseRI	GAGGAG	2 cut(s)	2207, 2469
BseSI	GKGCMC	4 cut(s)	208, 847, 1244, 1965
BseYI	CCCAGC	2 cut(s)	248, 393
Bsh1285I	CGRYCG	1 cut(s)	2875
BshFI	GGCC	1 cut(s)	2202
BshNI	GGYRCC	5 cut(s)	142, 389, 497, 1328, 2759
BshVI	ATCGAT	1 cut(s)	2532
BsiEI	CGRYCG	1 cut(s)	2875
BsiHKAI	GWGCWC	3 cut(s)	928, 1576, 1965
BsiSI	CCGG	7 cut(s)	611, 841, 1279, 1578, 1784, 2176, 2741
BslFI	GGGAC	3 cut(s)	1692, 1830, 2685
BsmAI	GTCTC	8 cut(s)	43, 73, 1103, 1545, 2037, 2289, 2320, 2871
BsmFI	GGGAC	3 cut(s)	1692, 1830, 2685
BsmI	GAATGC	1 cut(s)	2564
BsnI	GGCC	1 cut(s)	2202
Bsp1286I	GDGCHC	6 cut(s)	208, 847, 928, 1244, 1576, 1965
Bsp13I	TCCGGA	1 cut(s)	2740
Bsp19I	CCATGG	2 cut(s)	1624, 2754
BspACI	CCGC	9 cut(s)	125, 339, 369, 672, 675, 728, 1161, 1482, 2847
BspANI	GGCC	1 cut(s)	2202
BspCNI	CTCAG	5 cut(s)	67, 374, 936, 1594, 1935
BspDI	ATCGAT	1 cut(s)	2532
BspEI	TCCGGA	1 cut(s)	2740
BspLI	GGNNCC	8 cut(s)	144, 228, 391, 499, 1330, 2724, 2745, 2761
BspMAI	CTGCAG	1 cut(s)	1408
BspQI	GCTCTTC	1 cut(s)	2191
BspT107I	GGYRCC	5 cut(s)	142, 389, 497, 1328, 2759
BsrBI	CCGCTC	1 cut(s)	1484
BsrDI	GCAATG	1 cut(s)	2509
BsrI	ACTGG	3 cut(s)	1487, 2146, 2169
BssNAI	GTATAC	1 cut(s)	2354
BssT1I	CCWWGG	7 cut(s)	285, 981, 1012, 1332, 1624, 2754, 2862
Bst1107I	GTATAC	1 cut(s)	2354
Bst2UI	CCWGG	9 cut(s)	153, 387, 1236, 1350, 1391, 1767, 1914, 2214, 2781
Bst4CI	ACNGT	7 cut(s)	210, 497, 1539, 1616, 1717, 2597, 2797
Bst6I	CTCTTC	2 cut(s)	46, 2191
BstAPI	GCANNNNNTGC	3 cut(s)	1169, 2081, 2615
BstC8I	GCNNGC	4 cut(s)	859, 863, 2016, 2845
BstDEI	CTNAG	7 cut(s)	75, 361, 920, 944, 1602, 1682, 1943
BstDSI	CCRYGG	3 cut(s)	1624, 2359, 2754
BstEII	GGTNACC	1 cut(s)	1730
BstF5I	GGATG	7 cut(s)	1288, 1345, 1552, 1585, 1795, 1834, 2101
BstH2I	RGCGCY	1 cut(s)	2185
BstHHI	GCGC	4 cut(s)	550, 1894, 2184, 2656
BstMAI	GTCTC	8 cut(s)	43, 73, 1103, 1545, 2037, 2289, 2320, 2871
BstMCI	CGRYCG	1 cut(s)	2875
BstNI	CCWGG	9 cut(s)	153, 387, 1236, 1350, 1391, 1767, 1914, 2214, 2781
BstNSI	RCATGY	3 cut(s)	163, 2018, 2209
BstPI	GGTNACC	1 cut(s)	1730
BstSFI	CTRYAG	2 cut(s)	1404, 1503
BstSLI	GKGCMC	4 cut(s)	208, 847, 1244, 1965
BstV2I	GAAGAC	2 cut(s)	2373, 2791
BstX2I	RGATCY	5 cut(s)	226, 1079, 1382, 1709, 1760
BstXI	CCANNNNNNTGG	1 cut(s)	324
BstYI	RGATCY	5 cut(s)	226, 1079, 1382, 1709, 1760
BstZ17I	GTATAC	1 cut(s)	2354
Bsu15I	ATCGAT	1 cut(s)	2532
BsuRI	GGCC	1 cut(s)	2202
BsuTUI	ATCGAT	1 cut(s)	2532
BtgI	CCRYGG	3 cut(s)	1624, 2359, 2754
BtgZI	GCGATG	2 cut(s)	1880, 1938
BtsCI	GGATG	7 cut(s)	1288, 1345, 1552, 1585, 1795, 1834, 2101
BtsI	GCAGTG	2 cut(s)	852, 2453
BtsIMutI	CAGTG	9 cut(s)	139, 852, 941, 1494, 1713, 1726, 1885, 2453, 2602
Cac8I	GCNNGC	4 cut(s)	859, 863, 2016, 2845
CaiI	CAGNNNCTG	4 cut(s)	100, 1169, 1543, 2840
CfoI	GCGC	4 cut(s)	550, 1894, 2184, 2656
Cfr13I	GGNCC	3 cut(s)	1276, 2200, 2723
ClaI	ATCGAT	1 cut(s)	2532
CseI	GACGC	2 cut(s)	1348, 2382
Csp6I	GTAC	5 cut(s)	143, 762, 1950, 2172, 2760
CspCI	CAANNNNNGTGG	2 cut(s)	850, 885
CviQI	GTAC	5 cut(s)	143, 762, 1950, 2172, 2760
DdeI	CTNAG	7 cut(s)	75, 361, 920, 944, 1602, 1682, 1943
DraIII	CACNNNGTG	1 cut(s)	1738
Eam1104I	CTCTTC	2 cut(s)	46, 2191
EarI	CTCTTC	2 cut(s)	46, 2191
Eco130I	CCWWGG	7 cut(s)	285, 981, 1012, 1332, 1624, 2754, 2862
Eco32I	GATATC	1 cut(s)	838
Eco47I	GGWCC	2 cut(s)	1276, 2723
Eco47III	AGCGCT	1 cut(s)	2183
Eco57I	CTGAAG	3 cut(s)	479, 2172, 2817
Eco91I	GGTNACC	1 cut(s)	1730
EcoO65I	GGTNACC	1 cut(s)	1730
EcoRI	GAATTC	4 cut(s)	270, 1286, 1861, 2221
EcoRII	CCWGG	9 cut(s)	151, 385, 1234, 1348, 1389, 1765, 1912, 2212, 2779
EcoRV	GATATC	1 cut(s)	838
EcoT14I	CCWWGG	7 cut(s)	285, 981, 1012, 1332, 1624, 2754, 2862
EcoT22I	ATGCAT	1 cut(s)	2103
ErhI	CCWWGG	7 cut(s)	285, 981, 1012, 1332, 1624, 2754, 2862
FalI	AAGNNNNNCTT	4 cut(s)	2003, 2035, 2631, 2663
FaqI	GGGAC	3 cut(s)	1692, 1830, 2685
FauI	CCCGC	4 cut(s)	118, 362, 721, 1489
FauNDI	CATATG	2 cut(s)	1938, 2620
FbaI	TGATCA	2 cut(s)	700, 2388
FblI	GTMKAC	2 cut(s)	485, 2353
FokI	GGATG	7 cut(s)	1295, 1332, 1559, 1572, 1782, 1821, 2088
FspAI	RTGCGCAY	1 cut(s)	1893
FspBI	CTAG	4 cut(s)	1022, 1053, 1386, 1736
FspI	TGCGCA	2 cut(s)	1893, 2655
GlaI	GCGC	4 cut(s)	549, 1893, 2183, 2655
GsaI	CCCAGC	2 cut(s)	252, 397
GsuI	CTGGAG	2 cut(s)	1470, 1968
HaeII	RGCGCY	1 cut(s)	2185
HaeIII	GGCC	1 cut(s)	2202
HapII	CCGG	7 cut(s)	611, 841, 1279, 1578, 1784, 2176, 2741
HgaI	GACGC	2 cut(s)	1348, 2382
HhaI	GCGC	4 cut(s)	550, 1894, 2184, 2656
Hin6I	GCGC	4 cut(s)	548, 1892, 2182, 2654
HinP1I	GCGC	4 cut(s)	548, 1892, 2182, 2654
HindIII	AAGCTT	3 cut(s)	956, 1217, 2671
HpaII	CCGG	7 cut(s)	611, 841, 1279, 1578, 1784, 2176, 2741
HphI	GGTGA	9 cut(s)	275, 302, 650, 743, 1407, 1724, 1857, 2279, 2747
Hpy166II	GTNNAC	7 cut(s)	486, 734, 764, 1415, 1963, 2093, 2354
Hpy8I	GTNNAC	7 cut(s)	486, 734, 764, 1415, 1963, 2093, 2354
Hpy99I	CGWCG	1 cut(s)	1342
HpyCH4III	ACNGT	7 cut(s)	210, 497, 1539, 1616, 1717, 2597, 2797
HpyCH4IV	ACGT	3 cut(s)	2077, 2266, 2350
HpyF3I	CTNAG	7 cut(s)	75, 361, 920, 944, 1602, 1682, 1943
HpySE526I	ACGT	3 cut(s)	2077, 2266, 2350
HspAI	GCGC	4 cut(s)	548, 1892, 2182, 2654
Kpn2I	TCCGGA	1 cut(s)	2740
KpnI	GGTACC	2 cut(s)	146, 2763
Ksp22I	TGATCA	2 cut(s)	700, 2388
LguI	GCTCTTC	1 cut(s)	2191
LmnI	GCTCC	6 cut(s)	253, 1489, 1579, 1751, 1776, 1987
LweI	GCATC	9 cut(s)	874, 1462, 1508, 1843, 1903, 2088, 2110, 2412, 2618
MaeI	CTAG	4 cut(s)	1022, 1053, 1386, 1736
MaeII	ACGT	3 cut(s)	2077, 2266, 2350
MaeIII	GTNAC	6 cut(s)	935, 1055, 1357, 1489, 1526, 1730
MbiI	CCGCTC	1 cut(s)	1484
MfeI	CAATTG	3 cut(s)	555, 723, 2481
MflI	RGATCY	5 cut(s)	226, 1079, 1382, 1709, 1760
MhlI	GDGCHC	6 cut(s)	208, 847, 928, 1244, 1576, 1965
MlyI	GAGTC	3 cut(s)	138, 1105, 2039
MmeI	TCCRAC	3 cut(s)	67, 1842, 2895
Mph1103I	ATGCAT	1 cut(s)	2103
MroI	TCCGGA	1 cut(s)	2740
MroXI	GAANNNNTTC	1 cut(s)	270
MseI	TTAA	7 cut(s)	381, 783, 1095, 1377, 1992, 2592, 2675
MslI	CAYNNNNRTG	5 cut(s)	495, 741, 1968, 2384, 2525
MspA1I	CMGCKG	2 cut(s)	672, 1988
MspI	CCGG	7 cut(s)	611, 841, 1279, 1578, 1784, 2176, 2741
MunI	CAATTG	3 cut(s)	555, 723, 2481
Mva1269I	GAATGC	1 cut(s)	2564
MvaI	CCWGG	9 cut(s)	153, 387, 1236, 1350, 1391, 1767, 1914, 2214, 2781
NciI	CCSGG	6 cut(s)	612, 842, 1280, 1578, 1784, 2176
NcoI	CCATGG	2 cut(s)	1624, 2754
NdeI	CATATG	2 cut(s)	1938, 2620
NlaIV	GGNNCC	8 cut(s)	144, 228, 391, 499, 1330, 2724, 2745, 2761
NmeAIII	GCCGAG	1 cut(s)	1251
NmuCI	GTSAC	5 cut(s)	1055, 1357, 1489, 1526, 1730
NsbI	TGCGCA	2 cut(s)	1893, 2655
NsiI	ATGCAT	1 cut(s)	2103
NspI	RCATGY	3 cut(s)	163, 2018, 2209
PaeI	GCATGC	1 cut(s)	2018
PciI	ACATGT	1 cut(s)	2205
PciSI	GCTCTTC	1 cut(s)	2191
PcsI	WCGNNNNNNNCGW	1 cut(s)	2356
PctI	GAATGC	1 cut(s)	2564
PdmI	GAANNNNTTC	1 cut(s)	270
PfeI	GAWTC	7 cut(s)	527, 1040, 1659, 1917, 2252, 2827, 2867
PflMI	CCANNNNNTGG	2 cut(s)	1854, 2732
PfoI	TCCNGGA	2 cut(s)	1348, 1765
PleI	GAGTC	3 cut(s)	137, 1105, 2038
PpsI	GAGTC	3 cut(s)	137, 1105, 2038
PscI	ACATGT	1 cut(s)	2205
PshBI	ATTAAT	1 cut(s)	783
PsiI	TTATAA	2 cut(s)	618, 714
Psp6I	CCWGG	9 cut(s)	151, 385, 1234, 1348, 1389, 1765, 1912, 2212, 2779
PspEI	GGTNACC	1 cut(s)	1730
PspFI	CCCAGC	2 cut(s)	248, 393
PspGI	CCWGG	9 cut(s)	151, 385, 1234, 1348, 1389, 1765, 1912, 2212, 2779
PspN4I	GGNNCC	8 cut(s)	144, 228, 391, 499, 1330, 2724, 2745, 2761
PspPI	GGNCC	3 cut(s)	1276, 2200, 2723
PstI	CTGCAG	1 cut(s)	1408
PstNI	CAGNNNCTG	4 cut(s)	100, 1169, 1543, 2840
PsuI	RGATCY	5 cut(s)	226, 1079, 1382, 1709, 1760
PvuII	CAGCTG	1 cut(s)	1988
RsaI	GTAC	5 cut(s)	144, 763, 1951, 2173, 2761
RsaNI	GTAC	5 cut(s)	143, 762, 1950, 2172, 2760
RseI	CAYNNNNRTG	5 cut(s)	495, 741, 1968, 2384, 2525
SapI	GCTCTTC	1 cut(s)	2191
SaqAI	TTAA	7 cut(s)	381, 783, 1095, 1377, 1992, 2592, 2675
Sau96I	GGNCC	3 cut(s)	1276, 2200, 2723
SchI	GAGTC	3 cut(s)	138, 1105, 2039
SduI	GDGCHC	6 cut(s)	208, 847, 928, 1244, 1576, 1965
SfaNI	GCATC	9 cut(s)	874, 1462, 1508, 1843, 1903, 2088, 2110, 2412, 2618
SfcI	CTRYAG	2 cut(s)	1404, 1503
SinI	GGWCC	2 cut(s)	1276, 2723
SmiMI	CAYNNNNRTG	5 cut(s)	495, 741, 1968, 2384, 2525
SmlI	CTYRAG	4 cut(s)	415, 1220, 1260, 2668
SmoI	CTYRAG	4 cut(s)	415, 1220, 1260, 2668
SphI	GCATGC	1 cut(s)	2018
SsiI	CCGC	9 cut(s)	125, 339, 369, 672, 675, 728, 1161, 1482, 2847
SspI	AATATT	2 cut(s)	634, 781
SspMI	CTAG	4 cut(s)	1022, 1053, 1386, 1736
StyI	CCWWGG	7 cut(s)	285, 981, 1012, 1332, 1624, 2754, 2862
TaaI	ACNGT	7 cut(s)	210, 497, 1539, 1616, 1717, 2597, 2797
TaiI	ACGT	3 cut(s)	2080, 2269, 2353
TaqI	TCGA	4 cut(s)	2225, 2452, 2532, 2791
TaqII	GACCGA	2 cut(s)	1719, 2889
TauI	GCSGC	2 cut(s)	675, 1163
TfiI	GAWTC	7 cut(s)	527, 1040, 1659, 1917, 2252, 2827, 2867
Tru1I	TTAA	7 cut(s)	381, 783, 1095, 1377, 1992, 2592, 2675
Tru9I	TTAA	7 cut(s)	381, 783, 1095, 1377, 1992, 2592, 2675
TscAI	CASTG	9 cut(s)	139, 859, 948, 1494, 1720, 1726, 1885, 2453, 2602
TseFI	GTSAC	5 cut(s)	1055, 1357, 1489, 1526, 1730
Tsp45I	GTSAC	5 cut(s)	1055, 1357, 1489, 1526, 1730
TspGWI	ACGGA	5 cut(s)	1094, 1400, 1764, 2348, 2541
TspRI	CASTG	9 cut(s)	139, 859, 948, 1494, 1720, 1726, 1885, 2453, 2602
Van91I	CCANNNNNTGG	2 cut(s)	1854, 2732
VneI	GTGCAC	1 cut(s)	1961
VpaK11BI	GGWCC	2 cut(s)	1276, 2723
VspI	ATTAAT	1 cut(s)	783
XapI	RAATTY	9 cut(s)	270, 1071, 1286, 1292, 1861, 2149, 2221, 2305, 2857
XceI	RCATGY	3 cut(s)	163, 2018, 2209
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2210
XmiI	GTMKAC	2 cut(s)	485, 2353
XmnI	GAANNNNTTC	1 cut(s)	270
XspI	CTAG	4 cut(s)	1022, 1053, 1386, 1736
Zsp2I	ATGCAT	1 cut(s)	2103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.