Tyrosyl-DNA phosphodiesterase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G07400 AT5G07400 AT5G07400 AT5G07400 AT5G07400 AT5G07400 AT5G07400 AT5G07400 |
| fragaria_vesca | FvH4_5g10030 |
| malus_domestica | MD06G1128300.v1.1 MD09G1063600.v1.1 |
| prunus_persica | Prupe.5G138100_v2.0.a1 |
| pyrus_communis | pycom06g11850 |
| rosa_chinensis | RchiOBHm_Chr7g0188231 |
| rosa_laevigata | RLG00000002473 RLG00000004716 |
| rosa_multiflora | Rmu_sc0008750.1_g000014 |
| rosa_roxburghii | Rroxscaffold_3G00266590 |
| rosa_rugosa | Rorug06G0489000 Rorug06G0489300 |
| rosa_samantha | Rh7AG093600 Rh7BG095000 Rh7CG095400 Rh7DG095500 Rh7DG095600 |
| rosa_wichuraiana | Rw7G008060 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1773 |
| Acc36I | ACCTGC | 2 cut(s) | 1724, 2435 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 617, 3008 |
| AccBSI | CCGCTC | 1 cut(s) | 1878 |
| AccI | GTMKAC | 3 cut(s) | 682, 1111, 2379 |
| AciI | CCGC | 6 cut(s) | 432, 1408, 1656, 1876, 1930, 2778 |
| AclWI | GGATC | 4 cut(s) | 698, 1843, 2480, 2820 |
| AcoI | YGGCCR | 5 cut(s) | 113, 804, 887, 1588, 2575 |
| AcsI | RAATTY | 6 cut(s) | 325, 661, 898, 1826, 1945, 2129 |
| AcuI | CTGAAG | 4 cut(s) | 513, 1734, 2282, 3168 |
| AdeI | CACNNNGTG | 1 cut(s) | 1180 |
| AfaI | GTAC | 6 cut(s) | 119, 769, 970, 1715, 2308, 2994 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 617, 1010, 2495, 3008, 3032 |
| AflIII | ACRYGT | 1 cut(s) | 904 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 923 |
| AhlI | ACTAGT | 1 cut(s) | 2200 |
| AjiI | CACGTC | 1 cut(s) | 1522 |
| AjnI | CCWGG | 7 cut(s) | 1084, 1756, 2475, 2627, 2804, 2841, 3219 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1380, 1412 |
| Alw21I | GWGCWC | 4 cut(s) | 1639, 1903, 2282, 2904 |
| Alw26I | GTCTC | 6 cut(s) | 529, 931, 1865, 2106, 2635, 2716 |
| AlwI | GGATC | 4 cut(s) | 698, 1843, 2480, 2820 |
| AlwNI | CAGNNNCTG | 5 cut(s) | 617, 1568, 1757, 1796, 3252 |
| Ama87I | CYCGRG | 3 cut(s) | 540, 1938, 2903 |
| AoxI | GGCC | 9 cut(s) | 113, 804, 887, 1588, 1686, 2338, 2351, 2575, 3207 |
| ApeKI | GCWGC | 6 cut(s) | 962, 2168, 2206, 2441, 2798, 2801 |
| ApoI | RAATTY | 6 cut(s) | 325, 661, 898, 1826, 1945, 2129 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 2084, 2116, 2592, 2624 |
| AseI | ATTAAT | 1 cut(s) | 603 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 550, 1170, 1188, 1765, 1827 |
| AspS9I | GGNCC | 4 cut(s) | 1405, 1687, 2352, 2845 |
| AsuC2I | CCSGG | 2 cut(s) | 1939, 1940 |
| AsuHPI | GGTGA | 3 cut(s) | 1166, 1427, 1730 |
| AvaI | CYCGRG | 3 cut(s) | 540, 1938, 2903 |
| AvaII | GGWCC | 2 cut(s) | 1405, 2845 |
| AxyI | CCTNAGG | 2 cut(s) | 719, 1383 |
| BalI | TGGCCA | 1 cut(s) | 2577 |
| BanII | GRGCYC | 1 cut(s) | 2904 |
| BauI | CACGAG | 1 cut(s) | 2737 |
| BbsI | GAAGAC | 3 cut(s) | 63, 922, 2586 |
| Bbv12I | GWGCWC | 4 cut(s) | 1639, 1903, 2282, 2904 |
| BbvCI | CCTCAGC | 2 cut(s) | 3204, 3245 |
| BbvI | GCAGC | 6 cut(s) | 949, 2155, 2193, 2428, 2788, 2810 |
| BccI | CCATC | 7 cut(s) | 137, 452, 583, 1004, 2586, 2870, 3006 |
| BceAI | ACGGC | 5 cut(s) | 100, 256, 902, 1762, 2325 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 944, 978, 2262, 2296 |
| BciT130I | CCWGG | 7 cut(s) | 1086, 1758, 2477, 2629, 2806, 2843, 3221 |
| BciVI | GTATCC | 2 cut(s) | 47, 1380 |
| BclI | TGATCA | 1 cut(s) | 166 |
| BcnI | CCSGG | 2 cut(s) | 1939, 1940 |
| BcoDI | GTCTC | 6 cut(s) | 529, 931, 1865, 2106, 2635, 2716 |
| BcuI | ACTAGT | 1 cut(s) | 2200 |
| BfaI | CTAG | 6 cut(s) | 920, 990, 1257, 2066, 2201, 2718 |
| BfmI | CTRYAG | 6 cut(s) | 405, 1112, 2380, 2412, 2442, 3030 |
| BfuAI | ACCTGC | 2 cut(s) | 1724, 2435 |
| BfuI | GTATCC | 2 cut(s) | 47, 1380 |
| BisI | GCNGC | 8 cut(s) | 963, 1656, 2169, 2207, 2442, 2779, 2799, 2802 |
| BlpI | GCTNAGC | 2 cut(s) | 1638, 2404 |
| BlsI | GCNGC | 8 cut(s) | 964, 1657, 2170, 2208, 2443, 2780, 2800, 2803 |
| Bme1390I | CCNGG | 9 cut(s) | 1086, 1758, 1939, 1940, 2477, 2629, 2806, 2843, 3221 |
| Bme18I | GGWCC | 2 cut(s) | 1405, 2845 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 923 |
| BmeT110I | CYCGRG | 3 cut(s) | 540, 1938, 2903 |
| BmgBI | CACGTC | 1 cut(s) | 1522 |
| BmgT120I | GGNCC | 4 cut(s) | 1405, 1687, 2352, 2845 |
| BmiI | GGNNCC | 3 cut(s) | 547, 3000, 3218 |
| BmrFI | CCNGG | 9 cut(s) | 1086, 1758, 1939, 1940, 2477, 2629, 2806, 2843, 3221 |
| BmsI | GCATC | 9 cut(s) | 496, 1053, 1309, 1667, 1856, 2396, 2489, 2653, 3133 |
| BpiI | GAAGAC | 3 cut(s) | 63, 922, 2586 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3218, 3250 |
| BpmI | CTGGAG | 3 cut(s) | 594, 2524, 2815 |
| Bpu10I | CCTNAGC | 2 cut(s) | 3204, 3245 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1638, 2404 |
| BpuEI | CTTGAG | 2 cut(s) | 1721, 2664 |
| BpuMI | CCSGG | 2 cut(s) | 1939, 1940 |
| BsaBI | GATNNNNATC | 1 cut(s) | 35 |
| BsaI | GGTCTC | 2 cut(s) | 529, 1865 |
| BsaJI | CCNNGG | 7 cut(s) | 1085, 1417, 1938, 2078, 2161, 2475, 2805 |
| BsaWI | WCCGGW | 1 cut(s) | 260 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 476, 506, 3150, 3180 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 617, 1010, 2495, 3008, 3032 |
| Bse118I | RCCGGY | 2 cut(s) | 2995, 3025 |
| Bse1I | ACTGG | 5 cut(s) | 611, 1141, 1920, 2314, 2848 |
| Bse21I | CCTNAGG | 2 cut(s) | 719, 1383 |
| Bse3DI | GCAATG | 3 cut(s) | 1422, 1591, 2656 |
| Bse8I | GATNNNNATC | 1 cut(s) | 35 |
| BseBI | CCWGG | 7 cut(s) | 1086, 1758, 2477, 2629, 2806, 2843, 3221 |
| BseDI | CCNNGG | 7 cut(s) | 1085, 1417, 1938, 2078, 2161, 2475, 2805 |
| BseGI | GGATG | 7 cut(s) | 770, 2158, 2387, 2504, 3017, 3230, 3236 |
| BseJI | GATNNNNATC | 1 cut(s) | 35 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 617, 1010, 2495, 3008, 3032 |
| BseMI | GCAATG | 3 cut(s) | 1422, 1591, 2656 |
| BseNI | ACTGG | 5 cut(s) | 611, 1141, 1920, 2314, 2848 |
| BseRI | GAGGAG | 3 cut(s) | 831, 3171, 3191 |
| BseX3I | CGGCCG | 1 cut(s) | 113 |
| BseXI | GCAGC | 6 cut(s) | 949, 2155, 2193, 2428, 2788, 2810 |
| BsgI | GTGCAG | 1 cut(s) | 2817 |
| Bsh1285I | CGRYCG | 1 cut(s) | 116 |
| BshFI | GGCC | 9 cut(s) | 115, 806, 889, 1590, 1688, 2340, 2353, 2577, 3209 |
| BsiEI | CGRYCG | 1 cut(s) | 116 |
| BsiHKAI | GWGCWC | 4 cut(s) | 1639, 1903, 2282, 2904 |
| BsiHKCI | CYCGRG | 3 cut(s) | 540, 1938, 2903 |
| BsiSI | CCGG | 4 cut(s) | 261, 1939, 2996, 3026 |
| BslFI | GGGAC | 1 cut(s) | 2823 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 617, 1010, 2495, 3008, 3032 |
| BsmAI | GTCTC | 6 cut(s) | 529, 931, 1865, 2106, 2635, 2716 |
| BsmFI | GGGAC | 1 cut(s) | 2823 |
| BsmI | GAATGC | 3 cut(s) | 1188, 1470, 2011 |
| BsnI | GGCC | 9 cut(s) | 115, 806, 889, 1590, 1688, 2340, 2353, 2577, 3209 |
| Bso31I | GGTCTC | 2 cut(s) | 529, 1865 |
| BsoBI | CYCGRG | 3 cut(s) | 540, 1938, 2903 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1639, 1903, 2282, 2904 |
| Bsp1407I | TGTACA | 1 cut(s) | 767 |
| Bsp143I | GATC | 8 cut(s) | 109, 166, 703, 1570, 1835, 2485, 2750, 2825 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1638, 2404 |
| BspACI | CCGC | 6 cut(s) | 432, 1408, 1656, 1876, 1930, 2778 |
| BspANI | GGCC | 9 cut(s) | 115, 806, 889, 1590, 1688, 2340, 2353, 2577, 3209 |
| BspHI | TCATGA | 2 cut(s) | 841, 2932 |
| BspLI | GGNNCC | 3 cut(s) | 547, 3000, 3218 |
| BspMAI | CTGCAG | 1 cut(s) | 2446 |
| BspMI | ACCTGC | 2 cut(s) | 1724, 2435 |
| BspPI | GGATC | 4 cut(s) | 698, 1843, 2480, 2820 |
| BspQI | GCTCTTC | 1 cut(s) | 1552 |
| BspTNI | GGTCTC | 2 cut(s) | 529, 1865 |
| BsrBI | CCGCTC | 1 cut(s) | 1878 |
| BsrDI | GCAATG | 3 cut(s) | 1422, 1591, 2656 |
| BsrFI | RCCGGY | 2 cut(s) | 2995, 3025 |
| BsrGI | TGTACA | 1 cut(s) | 767 |
| BsrI | ACTGG | 5 cut(s) | 611, 1141, 1920, 2314, 2848 |
| BssAI | RCCGGY | 2 cut(s) | 2995, 3025 |
| BssECI | CCNNGG | 7 cut(s) | 1085, 1417, 1938, 2078, 2161, 2475, 2805 |
| BssMI | GATC | 8 cut(s) | 109, 166, 703, 1570, 1835, 2485, 2750, 2825 |
| BssSI | CACGAG | 1 cut(s) | 2737 |
| BssT1I | CCWWGG | 1 cut(s) | 2161 |
| Bst2BI | CACGAG | 1 cut(s) | 2737 |
| Bst2UI | CCWGG | 7 cut(s) | 1086, 1758, 2477, 2629, 2806, 2843, 3221 |
| Bst4CI | ACNGT | 7 cut(s) | 15, 194, 1116, 1418, 1512, 1534, 2384 |
| Bst6I | CTCTTC | 9 cut(s) | 496, 532, 557, 689, 1552, 3120, 3148, 3168, 3186 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1328, 2203 |
| BstAUI | TGTACA | 1 cut(s) | 767 |
| BstC8I | GCNNGC | 2 cut(s) | 1644, 1995 |
| BstDSI | CCRYGG | 2 cut(s) | 1417, 2078 |
| BstEII | GGTNACC | 1 cut(s) | 1736 |
| BstF5I | GGATG | 7 cut(s) | 770, 2158, 2387, 2504, 3017, 3230, 3236 |
| BstKTI | GATC | 8 cut(s) | 112, 169, 706, 1573, 1838, 2488, 2753, 2828 |
| BstMAI | GTCTC | 6 cut(s) | 529, 931, 1865, 2106, 2635, 2716 |
| BstMBI | GATC | 8 cut(s) | 109, 166, 703, 1570, 1835, 2485, 2750, 2825 |
| BstMCI | CGRYCG | 1 cut(s) | 116 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 1328, 1643, 1652, 2203, 2867 |
| BstNI | CCWGG | 7 cut(s) | 1086, 1758, 2477, 2629, 2806, 2843, 3221 |
| BstNSI | RCATGY | 3 cut(s) | 908, 1284, 2213 |
| BstPI | GGTNACC | 1 cut(s) | 1736 |
| BstSCI | CCNGG | 9 cut(s) | 1084, 1756, 1937, 1938, 2475, 2627, 2804, 2841, 3219 |
| BstSFI | CTRYAG | 6 cut(s) | 405, 1112, 2380, 2412, 2442, 3030 |
| BstV1I | GCAGC | 6 cut(s) | 949, 2155, 2193, 2428, 2788, 2810 |
| BstV2I | GAAGAC | 3 cut(s) | 63, 922, 2586 |
| BstX2I | RGATCY | 2 cut(s) | 1835, 2825 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 47, 1085 |
| BstYI | RGATCY | 2 cut(s) | 1835, 2825 |
| BstZI | CGGCCG | 1 cut(s) | 113 |
| Bsu36I | CCTNAGG | 2 cut(s) | 719, 1383 |
| BsuI | GTATCC | 2 cut(s) | 47, 1380 |
| BsuRI | GGCC | 9 cut(s) | 115, 806, 889, 1590, 1688, 2340, 2353, 2577, 3209 |
| BtgI | CCRYGG | 2 cut(s) | 1417, 2078 |
| BtrI | CACGTC | 1 cut(s) | 1522 |
| BtsCI | GGATG | 7 cut(s) | 770, 2158, 2387, 2504, 3017, 3230, 3236 |
| BtsIMutI | CAGTG | 8 cut(s) | 20, 190, 985, 1517, 1758, 1825, 2389, 2800 |
| BveI | ACCTGC | 2 cut(s) | 1724, 2435 |
| Cac8I | GCNNGC | 2 cut(s) | 1644, 1995 |
| CaiI | CAGNNNCTG | 5 cut(s) | 617, 1568, 1757, 1796, 3252 |
| CciI | TCATGA | 2 cut(s) | 841, 2932 |
| Cfr10I | RCCGGY | 2 cut(s) | 2995, 3025 |
| Cfr13I | GGNCC | 4 cut(s) | 1405, 1687, 2352, 2845 |
| Cfr9I | CCCGGG | 1 cut(s) | 1938 |
| Csp6I | GTAC | 6 cut(s) | 118, 768, 969, 1714, 2307, 2993 |
| CviQI | GTAC | 6 cut(s) | 118, 768, 969, 1714, 2307, 2993 |
| DpnI | GATC | 8 cut(s) | 111, 168, 705, 1572, 1837, 2487, 2752, 2827 |
| DpnII | GATC | 8 cut(s) | 109, 166, 703, 1570, 1835, 2485, 2750, 2825 |
| DraI | TTTAAA | 2 cut(s) | 1620, 2128 |
| DraIII | CACNNNGTG | 1 cut(s) | 1180 |
| DriI | GACNNNNNGTC | 1 cut(s) | 923 |
| EaeI | YGGCCR | 5 cut(s) | 113, 804, 887, 1588, 2575 |
| EagI | CGGCCG | 1 cut(s) | 113 |
| Eam1104I | CTCTTC | 9 cut(s) | 496, 532, 557, 689, 1552, 3120, 3148, 3168, 3186 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 923 |
| EarI | CTCTTC | 9 cut(s) | 496, 532, 557, 689, 1552, 3120, 3148, 3168, 3186 |
| Ecl136II | GAGCTC | 1 cut(s) | 2902 |
| EclXI | CGGCCG | 1 cut(s) | 113 |
| Eco130I | CCWWGG | 1 cut(s) | 2161 |
| Eco147I | AGGCCT | 1 cut(s) | 3209 |
| Eco24I | GRGCYC | 1 cut(s) | 2904 |
| Eco31I | GGTCTC | 2 cut(s) | 529, 1865 |
| Eco47I | GGWCC | 2 cut(s) | 1405, 2845 |
| Eco52I | CGGCCG | 1 cut(s) | 113 |
| Eco53kI | GAGCTC | 1 cut(s) | 2902 |
| Eco57I | CTGAAG | 4 cut(s) | 513, 1734, 2282, 3168 |
| Eco81I | CCTNAGG | 2 cut(s) | 719, 1383 |
| Eco88I | CYCGRG | 3 cut(s) | 540, 1938, 2903 |
| Eco91I | GGTNACC | 1 cut(s) | 1736 |
| EcoICRI | GAGCTC | 1 cut(s) | 2902 |
| EcoO65I | GGTNACC | 1 cut(s) | 1736 |
| EcoRI | GAATTC | 1 cut(s) | 661 |
| EcoRII | CCWGG | 7 cut(s) | 1084, 1756, 2475, 2627, 2804, 2841, 3219 |
| EcoT14I | CCWWGG | 1 cut(s) | 2161 |
| EcoT22I | ATGCAT | 1 cut(s) | 2706 |
| EcoT38I | GRGCYC | 1 cut(s) | 2904 |
| ErhI | CCWWGG | 1 cut(s) | 2161 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 493, 525, 1613, 1645, 1703, 1735 |
| FaqI | GGGAC | 1 cut(s) | 2823 |
| FauI | CCCGC | 1 cut(s) | 425 |
| FbaI | TGATCA | 1 cut(s) | 166 |
| FblI | GTMKAC | 3 cut(s) | 682, 1111, 2379 |
| Fnu4HI | GCNGC | 8 cut(s) | 963, 1656, 2169, 2207, 2442, 2779, 2799, 2802 |
| FokI | GGATG | 7 cut(s) | 757, 2165, 2374, 2511, 3024, 3217, 3223 |
| FriOI | GRGCYC | 1 cut(s) | 2904 |
| Fsp4HI | GCNGC | 8 cut(s) | 963, 1656, 2169, 2207, 2442, 2779, 2799, 2802 |
| FspBI | CTAG | 6 cut(s) | 920, 990, 1257, 2066, 2201, 2718 |
| GluI | GCNGC | 8 cut(s) | 963, 1656, 2169, 2207, 2442, 2779, 2799, 2802 |
| GsuI | CTGGAG | 3 cut(s) | 594, 2524, 2815 |
| HaeIII | GGCC | 9 cut(s) | 115, 806, 889, 1590, 1688, 2340, 2353, 2577, 3209 |
| HapII | CCGG | 4 cut(s) | 261, 1939, 2996, 3026 |
| HincII | GTYRAC | 1 cut(s) | 1145 |
| HindII | GTYRAC | 1 cut(s) | 1145 |
| HindIII | AAGCTT | 1 cut(s) | 3051 |
| HpaII | CCGG | 4 cut(s) | 261, 1939, 2996, 3026 |
| HphI | GGTGA | 3 cut(s) | 1166, 1427, 1730 |
| Hpy166II | GTNNAC | 8 cut(s) | 120, 683, 1112, 1145, 1707, 2380, 2747, 2773 |
| Hpy8I | GTNNAC | 8 cut(s) | 120, 683, 1112, 1145, 1707, 2380, 2747, 2773 |
| HpyCH4III | ACNGT | 7 cut(s) | 15, 194, 1116, 1418, 1512, 1534, 2384 |
| HpyCH4IV | ACGT | 2 cut(s) | 1521, 2602 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 1328, 1643, 1652, 2203, 2867 |
| HpySE526I | ACGT | 2 cut(s) | 1521, 2602 |
| Ksp22I | TGATCA | 1 cut(s) | 166 |
| Kzo9I | GATC | 8 cut(s) | 109, 166, 703, 1570, 1835, 2485, 2750, 2825 |
| LguI | GCTCTTC | 1 cut(s) | 1552 |
| LmnI | GCTCC | 8 cut(s) | 589, 1898, 2165, 2181, 2533, 3004, 3216, 3254 |
| Lsp1109I | GCAGC | 6 cut(s) | 949, 2155, 2193, 2428, 2788, 2810 |
| LweI | GCATC | 9 cut(s) | 496, 1053, 1309, 1667, 1856, 2396, 2489, 2653, 3133 |
| MaeI | CTAG | 6 cut(s) | 920, 990, 1257, 2066, 2201, 2718 |
| MaeII | ACGT | 2 cut(s) | 1521, 2602 |
| MalI | GATC | 8 cut(s) | 111, 168, 705, 1572, 1837, 2487, 2752, 2827 |
| MbiI | CCGCTC | 1 cut(s) | 1878 |
| MboI | GATC | 8 cut(s) | 109, 166, 703, 1570, 1835, 2485, 2750, 2825 |
| MflI | RGATCY | 2 cut(s) | 1835, 2825 |
| MhlI | GDGCHC | 4 cut(s) | 1639, 1903, 2282, 2904 |
| MlsI | TGGCCA | 1 cut(s) | 2577 |
| MluNI | TGGCCA | 1 cut(s) | 2577 |
| MlyI | GAGTC | 8 cut(s) | 1802, 2025, 2465, 2489, 2574, 2718, 2939, 3236 |
| MmeI | TCCRAC | 3 cut(s) | 1283, 2086, 2671 |
| Mox20I | TGGCCA | 1 cut(s) | 2577 |
| Mph1103I | ATGCAT | 1 cut(s) | 2706 |
| MroXI | GAANNNNTTC | 5 cut(s) | 550, 1170, 1188, 1765, 1827 |
| MscI | TGGCCA | 1 cut(s) | 2577 |
| MseI | TTAA | 7 cut(s) | 603, 822, 1023, 1619, 2127, 2538, 2874 |
| MslI | CAYNNNNRTG | 2 cut(s) | 2583, 2649 |
| Msp20I | TGGCCA | 1 cut(s) | 2577 |
| MspA1I | CMGCKG | 4 cut(s) | 1642, 2441, 2778, 2801 |
| MspI | CCGG | 4 cut(s) | 261, 1939, 2996, 3026 |
| MspR9I | CCNGG | 9 cut(s) | 1086, 1758, 1939, 1940, 2477, 2629, 2806, 2843, 3221 |
| Mva1269I | GAATGC | 3 cut(s) | 1188, 1470, 2011 |
| MvaI | CCWGG | 7 cut(s) | 1086, 1758, 2477, 2629, 2806, 2843, 3221 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 1328, 1643, 1652, 2203, 2867 |
| NciI | CCSGG | 2 cut(s) | 1939, 1940 |
| NdeII | GATC | 8 cut(s) | 109, 166, 703, 1570, 1835, 2485, 2750, 2825 |
| NlaIV | GGNNCC | 3 cut(s) | 547, 3000, 3218 |
| NmeAIII | GCCGAG | 1 cut(s) | 856 |
| NmuCI | GTSAC | 6 cut(s) | 218, 1270, 1283, 1357, 1522, 1736 |
| NsiI | ATGCAT | 1 cut(s) | 2706 |
| NspI | RCATGY | 3 cut(s) | 908, 1284, 2213 |
| PaeR7I | CTCGAG | 1 cut(s) | 540 |
| PagI | TCATGA | 2 cut(s) | 841, 2932 |
| PceI | AGGCCT | 1 cut(s) | 3209 |
| PciI | ACATGT | 1 cut(s) | 904 |
| PciSI | GCTCTTC | 1 cut(s) | 1552 |
| PctI | GAATGC | 3 cut(s) | 1188, 1470, 2011 |
| PdmI | GAANNNNTTC | 5 cut(s) | 550, 1170, 1188, 1765, 1827 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 617, 3008 |
| PkrI | GCNGC | 8 cut(s) | 964, 1657, 2170, 2208, 2443, 2780, 2800, 2803 |
| PleI | GAGTC | 8 cut(s) | 1801, 2024, 2465, 2488, 2573, 2718, 2939, 3235 |
| PpsI | GAGTC | 8 cut(s) | 1801, 2024, 2465, 2488, 2573, 2718, 2939, 3235 |
| PscI | ACATGT | 1 cut(s) | 904 |
| PshBI | ATTAAT | 1 cut(s) | 603 |
| PsiI | TTATAA | 1 cut(s) | 1773 |
| Psp124BI | GAGCTC | 1 cut(s) | 2904 |
| Psp6I | CCWGG | 7 cut(s) | 1084, 1756, 2475, 2627, 2804, 2841, 3219 |
| PspEI | GGTNACC | 1 cut(s) | 1736 |
| PspGI | CCWGG | 7 cut(s) | 1084, 1756, 2475, 2627, 2804, 2841, 3219 |
| PspN4I | GGNNCC | 3 cut(s) | 547, 3000, 3218 |
| PspPI | GGNCC | 4 cut(s) | 1405, 1687, 2352, 2845 |
| PstI | CTGCAG | 1 cut(s) | 2446 |
| PstNI | CAGNNNCTG | 5 cut(s) | 617, 1568, 1757, 1796, 3252 |
| PsuI | RGATCY | 2 cut(s) | 1835, 2825 |
| PvuII | CAGCTG | 3 cut(s) | 1642, 2441, 2801 |
| RsaI | GTAC | 6 cut(s) | 119, 769, 970, 1715, 2308, 2994 |
| RsaNI | GTAC | 6 cut(s) | 118, 768, 969, 1714, 2307, 2993 |
| RseI | CAYNNNNRTG | 2 cut(s) | 2583, 2649 |
| SacI | GAGCTC | 1 cut(s) | 2904 |
| SapI | GCTCTTC | 1 cut(s) | 1552 |
| SaqAI | TTAA | 7 cut(s) | 603, 822, 1023, 1619, 2127, 2538, 2874 |
| SatI | GCNGC | 8 cut(s) | 963, 1656, 2169, 2207, 2442, 2779, 2799, 2802 |
| Sau3AI | GATC | 8 cut(s) | 109, 166, 703, 1570, 1835, 2485, 2750, 2825 |
| Sau96I | GGNCC | 4 cut(s) | 1405, 1687, 2352, 2845 |
| SchI | GAGTC | 8 cut(s) | 1802, 2025, 2465, 2489, 2574, 2718, 2939, 3236 |
| ScrFI | CCNGG | 9 cut(s) | 1086, 1758, 1939, 1940, 2477, 2629, 2806, 2843, 3221 |
| SduI | GDGCHC | 4 cut(s) | 1639, 1903, 2282, 2904 |
| SfaNI | GCATC | 9 cut(s) | 496, 1053, 1309, 1667, 1856, 2396, 2489, 2653, 3133 |
| SfcI | CTRYAG | 6 cut(s) | 405, 1112, 2380, 2412, 2442, 3030 |
| Sfr274I | CTCGAG | 1 cut(s) | 540 |
| SinI | GGWCC | 2 cut(s) | 1405, 2845 |
| SlaI | CTCGAG | 1 cut(s) | 540 |
| SmaI | CCCGGG | 1 cut(s) | 1940 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 2583, 2649 |
| SmlI | CTYRAG | 3 cut(s) | 540, 1700, 2679 |
| SmoI | CTYRAG | 3 cut(s) | 540, 1700, 2679 |
| SpeI | ACTAGT | 1 cut(s) | 2200 |
| SseBI | AGGCCT | 1 cut(s) | 3209 |
| SsiI | CCGC | 6 cut(s) | 432, 1408, 1656, 1876, 1930, 2778 |
| SspI | AATATT | 1 cut(s) | 46 |
| SspMI | CTAG | 6 cut(s) | 920, 990, 1257, 2066, 2201, 2718 |
| SstI | GAGCTC | 1 cut(s) | 2904 |
| StuI | AGGCCT | 1 cut(s) | 3209 |
| StyD4I | CCNGG | 9 cut(s) | 1084, 1756, 1937, 1938, 2475, 2627, 2804, 2841, 3219 |
| StyI | CCWWGG | 1 cut(s) | 2161 |
| TaaI | ACNGT | 7 cut(s) | 15, 194, 1116, 1418, 1512, 1534, 2384 |
| TaiI | ACGT | 2 cut(s) | 1524, 2605 |
| TaqI | TCGA | 5 cut(s) | 130, 463, 512, 541, 2393 |
| TaqII | GACCGA | 1 cut(s) | 511 |
| TatI | WGTACW | 4 cut(s) | 767, 968, 1713, 2306 |
| TauI | GCSGC | 2 cut(s) | 1658, 2781 |
| Tru1I | TTAA | 7 cut(s) | 603, 822, 1023, 1619, 2127, 2538, 2874 |
| Tru9I | TTAA | 7 cut(s) | 603, 822, 1023, 1619, 2127, 2538, 2874 |
| TscAI | CASTG | 8 cut(s) | 20, 197, 985, 1517, 1758, 1825, 2389, 2800 |
| TseFI | GTSAC | 6 cut(s) | 218, 1270, 1283, 1357, 1522, 1736 |
| TseI | GCWGC | 6 cut(s) | 962, 2168, 2206, 2441, 2798, 2801 |
| Tsp45I | GTSAC | 6 cut(s) | 218, 1270, 1283, 1357, 1522, 1736 |
| TspDTI | ATGAA | 5 cut(s) | 17, 1911, 2169, 2424, 2949 |
| TspGWI | ACGGA | 1 cut(s) | 2095 |
| TspMI | CCCGGG | 1 cut(s) | 1938 |
| TspRI | CASTG | 8 cut(s) | 20, 197, 985, 1517, 1758, 1825, 2389, 2800 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 617, 3008 |
| VpaK11BI | GGWCC | 2 cut(s) | 1405, 2845 |
| VspI | ATTAAT | 1 cut(s) | 603 |
| XapI | RAATTY | 6 cut(s) | 325, 661, 898, 1826, 1945, 2129 |
| XceI | RCATGY | 3 cut(s) | 908, 1284, 2213 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3009 |
| XhoI | CTCGAG | 1 cut(s) | 540 |
| XmaI | CCCGGG | 1 cut(s) | 1938 |
| XmiI | GTMKAC | 3 cut(s) | 682, 1111, 2379 |
| XmnI | GAANNNNTTC | 5 cut(s) | 550, 1170, 1188, 1765, 1827 |
| XspI | CTAG | 6 cut(s) | 920, 990, 1257, 2066, 2201, 2718 |
| Zsp2I | ATGCAT | 1 cut(s) | 2706 |