Tyrosyl-DNA phosphodiesterase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G07400 AT5G07400 AT5G07400 AT5G07400 AT5G07400 AT5G07400 AT5G07400 AT5G07400 |
| fragaria_vesca | FvH4_5g10030 |
| malus_domestica | MD06G1128300.v1.1 MD09G1063600.v1.1 |
| prunus_persica | Prupe.5G138100_v2.0.a1 |
| pyrus_communis | pycom06g11850 |
| rosa_chinensis | RchiOBHm_Chr7g0188231 |
| rosa_laevigata | RLG00000002473 RLG00000004716 |
| rosa_multiflora | Rmu_sc0008750.1_g000014 |
| rosa_roxburghii | Rroxscaffold_3G00266590 |
| rosa_rugosa | Rorug06G0489000 Rorug06G0489300 |
| rosa_samantha | Rh7AG093600 Rh7BG095000 Rh7CG095400 Rh7DG095500 Rh7DG095600 |
| rosa_wichuraiana | Rw7G008060 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 281, 1001 |
| AatII | GACGTC | 1 cut(s) | 165 |
| AccB1I | GGYRCC | 2 cut(s) | 2397, 3064 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1596 |
| AccI | GTMKAC | 2 cut(s) | 292, 1135 |
| AccII | CGCG | 2 cut(s) | 97, 282 |
| AccIII | TCCGGA | 1 cut(s) | 821 |
| AclI | AACGTT | 1 cut(s) | 1268 |
| AclWI | GGATC | 9 cut(s) | 228, 598, 813, 847, 1924, 2552, 2594, 2949, 2984 |
| AcoI | YGGCCR | 1 cut(s) | 238 |
| AcsI | RAATTY | 8 cut(s) | 705, 1039, 1403, 1552, 1907, 2306, 2492, 2504 |
| AcuI | CTGAAG | 4 cut(s) | 885, 918, 2009, 2842 |
| AcyI | GRCGYC | 2 cut(s) | 162, 2398 |
| AdeI | CACNNNGTG | 1 cut(s) | 2654 |
| AfaI | GTAC | 4 cut(s) | 1072, 1815, 2274, 2386 |
| AfeI | AGCGCT | 1 cut(s) | 351 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 217, 240, 738, 1091, 1596, 2407, 2567 |
| AflIII | ACRYGT | 3 cut(s) | 743, 2287, 2341 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 652 |
| AjiI | CACGTC | 1 cut(s) | 174 |
| AjnI | CCWGG | 5 cut(s) | 300, 477, 1141, 1816, 2870 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2121, 2153 |
| Alw21I | GWGCWC | 4 cut(s) | 799, 1190, 1624, 3032 |
| Alw26I | GTCTC | 6 cut(s) | 100, 468, 487, 2182, 2996, 3084 |
| AlwI | GGATC | 9 cut(s) | 228, 598, 813, 847, 1924, 2552, 2594, 2949, 2984 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2516 |
| Ama87I | CYCGRG | 1 cut(s) | 103 |
| Aor13HI | TCCGGA | 1 cut(s) | 821 |
| Aor51HI | AGCGCT | 1 cut(s) | 351 |
| AoxI | GGCC | 8 cut(s) | 224, 238, 642, 1443, 1746, 2389, 2429, 3095 |
| ApeKI | GCWGC | 9 cut(s) | 255, 910, 956, 1119, 2246, 2513, 2516, 2864, 2867 |
| ApoI | RAATTY | 8 cut(s) | 705, 1039, 1403, 1552, 1907, 2306, 2492, 2504 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2435, 2467 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1825, 3198 |
| AspLEI | GCGC | 3 cut(s) | 139, 352, 2400 |
| AspS9I | GGNCC | 5 cut(s) | 642, 1180, 1747, 1883, 2300 |
| AsuC2I | CCSGG | 1 cut(s) | 218 |
| AsuHPI | GGTGA | 4 cut(s) | 461, 986, 1469, 2977 |
| AvaI | CYCGRG | 1 cut(s) | 103 |
| AvaII | GGWCC | 3 cut(s) | 1180, 1883, 2300 |
| AxyI | CCTNAGG | 3 cut(s) | 612, 1440, 2229 |
| BanI | GGYRCC | 2 cut(s) | 2397, 3064 |
| BanII | GRGCYC | 3 cut(s) | 248, 799, 1190 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2712, 2744 |
| BauI | CACGAG | 1 cut(s) | 1023 |
| BbsI | GAAGAC | 5 cut(s) | 168, 651, 924, 1467, 2800 |
| Bbv12I | GWGCWC | 4 cut(s) | 799, 1190, 1624, 3032 |
| BbvCI | CCTCAGC | 1 cut(s) | 2711 |
| BbvI | GCAGC | 9 cut(s) | 242, 922, 943, 1131, 2258, 2503, 2525, 2854, 2876 |
| BceAI | ACGGC | 2 cut(s) | 147, 2291 |
| BciT130I | CCWGG | 5 cut(s) | 302, 479, 1143, 1818, 2872 |
| BcnI | CCSGG | 1 cut(s) | 218 |
| BcoDI | GTCTC | 6 cut(s) | 100, 468, 487, 2182, 2996, 3084 |
| BfaI | CTAG | 7 cut(s) | 39, 639, 953, 1314, 2157, 2808, 3203 |
| BfmI | CTRYAG | 2 cut(s) | 2402, 2517 |
| BfoI | RGCGCY | 3 cut(s) | 140, 353, 2401 |
| Bme1390I | CCNGG | 6 cut(s) | 218, 302, 479, 1143, 1818, 2872 |
| Bme18I | GGWCC | 3 cut(s) | 1180, 1883, 2300 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 652 |
| BmeT110I | CYCGRG | 1 cut(s) | 103 |
| BmgBI | CACGTC | 1 cut(s) | 174 |
| BmgT120I | GGNCC | 5 cut(s) | 642, 1180, 1747, 1883, 2300 |
| BmiI | GGNNCC | 6 cut(s) | 245, 2301, 2399, 2801, 3066, 3287 |
| BmrFI | CCNGG | 6 cut(s) | 218, 302, 479, 1143, 1818, 2872 |
| BmrI | ACTGGG | 1 cut(s) | 1744 |
| BmuI | ACTGGG | 1 cut(s) | 1744 |
| BpiI | GAAGAC | 5 cut(s) | 168, 651, 924, 1467, 2800 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2711 |
| BpuEI | CTTGAG | 1 cut(s) | 709 |
| BpuMI | CCSGG | 1 cut(s) | 218 |
| BsaHI | GRCGYC | 2 cut(s) | 162, 2398 |
| BsaI | GGTCTC | 4 cut(s) | 100, 468, 487, 2182 |
| BsaJI | CCNNGG | 5 cut(s) | 586, 1912, 2239, 2781, 2871 |
| BsaWI | WCCGGW | 3 cut(s) | 193, 520, 821 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 217, 240, 738, 1091, 1596, 2407, 2567 |
| Bse1I | ACTGG | 5 cut(s) | 505, 1325, 1750, 2001, 2803 |
| Bse21I | CCTNAGG | 3 cut(s) | 612, 1440, 2229 |
| Bse3DI | GCAATG | 5 cut(s) | 295, 772, 880, 1797, 2163 |
| BseAI | TCCGGA | 1 cut(s) | 821 |
| BseBI | CCWGG | 5 cut(s) | 302, 479, 1143, 1818, 2872 |
| BseDI | CCNNGG | 5 cut(s) | 586, 1912, 2239, 2781, 2871 |
| BseGI | GGATG | 9 cut(s) | 204, 623, 1231, 1426, 1492, 2576, 2603, 2767, 3046 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 217, 240, 738, 1091, 1596, 2407, 2567 |
| BseMI | GCAATG | 5 cut(s) | 295, 772, 880, 1797, 2163 |
| BseMII | CTCAG | 9 cut(s) | 1431, 2023, 2115, 2439, 2538, 2553, 2682, 2702, 3264 |
| BseNI | ACTGG | 5 cut(s) | 505, 1325, 1750, 2001, 2803 |
| BseRI | GAGGAG | 2 cut(s) | 2564, 3102 |
| BseX3I | CGGCCG | 1 cut(s) | 238 |
| BseXI | GCAGC | 9 cut(s) | 242, 922, 943, 1131, 2258, 2503, 2525, 2854, 2876 |
| BsgI | GTGCAG | 4 cut(s) | 718, 911, 1374, 2883 |
| Bsh1236I | CGCG | 2 cut(s) | 97, 282 |
| Bsh1285I | CGRYCG | 3 cut(s) | 186, 241, 277 |
| BshFI | GGCC | 8 cut(s) | 226, 240, 644, 1445, 1748, 2391, 2431, 3097 |
| BshNI | GGYRCC | 2 cut(s) | 2397, 3064 |
| BsiEI | CGRYCG | 3 cut(s) | 186, 241, 277 |
| BsiHKAI | GWGCWC | 4 cut(s) | 799, 1190, 1624, 3032 |
| BsiHKCI | CYCGRG | 1 cut(s) | 103 |
| BsiSI | CCGG | 6 cut(s) | 194, 218, 241, 521, 822, 1656 |
| BslFI | GGGAC | 5 cut(s) | 149, 1060, 1809, 2313, 2889 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 217, 240, 738, 1091, 1596, 2407, 2567 |
| BsmAI | GTCTC | 6 cut(s) | 100, 468, 487, 2182, 2996, 3084 |
| BsmFI | GGGAC | 5 cut(s) | 149, 1060, 1809, 2313, 2889 |
| BsmI | GAATGC | 4 cut(s) | 1579, 2094, 2584, 2650 |
| BsnI | GGCC | 8 cut(s) | 226, 240, 644, 1445, 1748, 2391, 2431, 3097 |
| Bso31I | GGTCTC | 4 cut(s) | 100, 468, 487, 2182 |
| BsoBI | CYCGRG | 1 cut(s) | 103 |
| Bsp1286I | GDGCHC | 5 cut(s) | 248, 799, 1190, 1624, 3032 |
| Bsp13I | TCCGGA | 1 cut(s) | 821 |
| Bsp1407I | TGTACA | 1 cut(s) | 2384 |
| BspANI | GGCC | 8 cut(s) | 226, 240, 644, 1445, 1748, 2391, 2431, 3097 |
| BspCNI | CTCAG | 9 cut(s) | 1432, 2022, 2116, 2440, 2539, 2554, 2683, 2703, 3265 |
| BspEI | TCCGGA | 1 cut(s) | 821 |
| BspFNI | CGCG | 2 cut(s) | 97, 282 |
| BspHI | TCATGA | 2 cut(s) | 2587, 2731 |
| BspLI | GGNNCC | 6 cut(s) | 245, 2301, 2399, 2801, 3066, 3287 |
| BspMAI | CTGCAG | 2 cut(s) | 2406, 2521 |
| BspPI | GGATC | 9 cut(s) | 228, 598, 813, 847, 1924, 2552, 2594, 2949, 2984 |
| BspQI | GCTCTTC | 1 cut(s) | 1195 |
| BspT107I | GGYRCC | 2 cut(s) | 2397, 3064 |
| BspTNI | GGTCTC | 4 cut(s) | 100, 468, 487, 2182 |
| BsrDI | GCAATG | 5 cut(s) | 295, 772, 880, 1797, 2163 |
| BsrGI | TGTACA | 1 cut(s) | 2384 |
| BsrI | ACTGG | 5 cut(s) | 505, 1325, 1750, 2001, 2803 |
| BssECI | CCNNGG | 5 cut(s) | 586, 1912, 2239, 2781, 2871 |
| BssNI | GRCGYC | 2 cut(s) | 162, 2398 |
| BssSI | CACGAG | 1 cut(s) | 1023 |
| BssT1I | CCWWGG | 3 cut(s) | 586, 2239, 2781 |
| Bst2BI | CACGAG | 1 cut(s) | 1023 |
| Bst2UI | CCWGG | 5 cut(s) | 302, 479, 1143, 1818, 2872 |
| Bst4CI | ACNGT | 9 cut(s) | 650, 917, 947, 1333, 1503, 1569, 2719, 2799, 3011 |
| Bst6I | CTCTTC | 4 cut(s) | 1195, 2911, 3165, 3189 |
| BstACI | GRCGYC | 2 cut(s) | 162, 2398 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 1485, 1970, 1979 |
| BstAUI | TGTACA | 1 cut(s) | 2384 |
| BstC8I | GCNNGC | 7 cut(s) | 679, 1339, 2402, 3069, 3099, 3111, 3123 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 736, 2405 |
| BstF5I | GGATG | 9 cut(s) | 204, 623, 1231, 1426, 1492, 2576, 2603, 2767, 3046 |
| BstFNI | CGCG | 2 cut(s) | 97, 282 |
| BstH2I | RGCGCY | 3 cut(s) | 140, 353, 2401 |
| BstHHI | GCGC | 3 cut(s) | 139, 352, 2400 |
| BstMAI | GTCTC | 6 cut(s) | 100, 468, 487, 2182, 2996, 3084 |
| BstMCI | CGRYCG | 3 cut(s) | 186, 241, 277 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 252, 641, 650, 1485, 1970, 1979, 2243, 2397, 2437 |
| BstNI | CCWGG | 5 cut(s) | 302, 479, 1143, 1818, 2872 |
| BstNSI | RCATGY | 2 cut(s) | 2291, 2345 |
| BstSCI | CCNGG | 6 cut(s) | 216, 300, 477, 1141, 1816, 2870 |
| BstSFI | CTRYAG | 2 cut(s) | 2402, 2517 |
| BstUI | CGCG | 2 cut(s) | 97, 282 |
| BstV1I | GCAGC | 9 cut(s) | 242, 922, 943, 1131, 2258, 2503, 2525, 2854, 2876 |
| BstV2I | GAAGAC | 5 cut(s) | 168, 651, 924, 1467, 2800 |
| BstX2I | RGATCY | 3 cut(s) | 590, 818, 2599 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1569 |
| BstYI | RGATCY | 3 cut(s) | 590, 818, 2599 |
| BstZI | CGGCCG | 1 cut(s) | 238 |
| Bsu36I | CCTNAGG | 3 cut(s) | 612, 1440, 2229 |
| BsuRI | GGCC | 8 cut(s) | 226, 240, 644, 1445, 1748, 2391, 2431, 3097 |
| BtgZI | GCGATG | 1 cut(s) | 483 |
| BtrI | CACGTC | 1 cut(s) | 174 |
| BtsCI | GGATG | 9 cut(s) | 204, 623, 1231, 1426, 1492, 2576, 2603, 2767, 3046 |
| BtsI | GCAGTG | 1 cut(s) | 2094 |
| BtsIMutI | CAGTG | 8 cut(s) | 909, 913, 952, 1371, 1574, 1757, 2094, 2866 |
| Cac8I | GCNNGC | 7 cut(s) | 679, 1339, 2402, 3069, 3099, 3111, 3123 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2516 |
| CciI | TCATGA | 2 cut(s) | 2587, 2731 |
| CfoI | GCGC | 3 cut(s) | 139, 352, 2400 |
| Cfr13I | GGNCC | 5 cut(s) | 642, 1180, 1747, 1883, 2300 |
| CseI | GACGC | 2 cut(s) | 271, 642 |
| CsiI | ACCWGGT | 1 cut(s) | 477 |
| Csp6I | GTAC | 4 cut(s) | 1071, 1814, 2273, 2385 |
| CviQI | GTAC | 4 cut(s) | 1071, 1814, 2273, 2385 |
| DinI | GGCGCC | 1 cut(s) | 2399 |
| DraI | TTTAAA | 1 cut(s) | 2904 |
| DraIII | CACNNNGTG | 1 cut(s) | 2654 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 281, 1001 |
| DriI | GACNNNNNGTC | 1 cut(s) | 652 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 281, 1001 |
| EaeI | YGGCCR | 1 cut(s) | 238 |
| EagI | CGGCCG | 1 cut(s) | 238 |
| Eam1104I | CTCTTC | 4 cut(s) | 1195, 2911, 3165, 3189 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 652 |
| EarI | CTCTTC | 4 cut(s) | 1195, 2911, 3165, 3189 |
| EciI | GGCGGA | 2 cut(s) | 197, 3197 |
| Ecl136II | GAGCTC | 2 cut(s) | 797, 1188 |
| EclXI | CGGCCG | 1 cut(s) | 238 |
| Eco130I | CCWWGG | 3 cut(s) | 586, 2239, 2781 |
| Eco147I | AGGCCT | 1 cut(s) | 2391 |
| Eco24I | GRGCYC | 3 cut(s) | 248, 799, 1190 |
| Eco31I | GGTCTC | 4 cut(s) | 100, 468, 487, 2182 |
| Eco47I | GGWCC | 3 cut(s) | 1180, 1883, 2300 |
| Eco47III | AGCGCT | 1 cut(s) | 351 |
| Eco52I | CGGCCG | 1 cut(s) | 238 |
| Eco53kI | GAGCTC | 2 cut(s) | 797, 1188 |
| Eco57I | CTGAAG | 4 cut(s) | 885, 918, 2009, 2842 |
| Eco81I | CCTNAGG | 3 cut(s) | 612, 1440, 2229 |
| Eco88I | CYCGRG | 1 cut(s) | 103 |
| EcoICRI | GAGCTC | 2 cut(s) | 797, 1188 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 736, 2405 |
| EcoRII | CCWGG | 5 cut(s) | 300, 477, 1141, 1816, 2870 |
| EcoT14I | CCWWGG | 3 cut(s) | 586, 2239, 2781 |
| EcoT22I | ATGCAT | 2 cut(s) | 2778, 2821 |
| EcoT38I | GRGCYC | 3 cut(s) | 248, 799, 1190 |
| EgeI | GGCGCC | 1 cut(s) | 2399 |
| EheI | GGCGCC | 1 cut(s) | 2399 |
| ErhI | CCWWGG | 3 cut(s) | 586, 2239, 2781 |
| FaqI | GGGAC | 5 cut(s) | 149, 1060, 1809, 2313, 2889 |
| FauI | CCCGC | 3 cut(s) | 257, 2080, 2837 |
| FblI | GTMKAC | 2 cut(s) | 292, 1135 |
| FokI | GGATG | 9 cut(s) | 191, 630, 1218, 1413, 1479, 2583, 2590, 2754, 3053 |
| FriOI | GRGCYC | 3 cut(s) | 248, 799, 1190 |
| FspBI | CTAG | 7 cut(s) | 39, 639, 953, 1314, 2157, 2808, 3203 |
| GlaI | GCGC | 3 cut(s) | 138, 351, 2399 |
| HaeII | RGCGCY | 3 cut(s) | 140, 353, 2401 |
| HaeIII | GGCC | 8 cut(s) | 226, 240, 644, 1445, 1748, 2391, 2431, 3097 |
| HapII | CCGG | 6 cut(s) | 194, 218, 241, 521, 822, 1656 |
| HgaI | GACGC | 2 cut(s) | 271, 642 |
| HhaI | GCGC | 3 cut(s) | 139, 352, 2400 |
| Hin1I | GRCGYC | 2 cut(s) | 162, 2398 |
| Hin6I | GCGC | 3 cut(s) | 137, 350, 2398 |
| HinP1I | GCGC | 3 cut(s) | 137, 350, 2398 |
| HincII | GTYRAC | 3 cut(s) | 293, 897, 1299 |
| HindII | GTYRAC | 3 cut(s) | 293, 897, 1299 |
| HpaII | CCGG | 6 cut(s) | 194, 218, 241, 521, 822, 1656 |
| HphI | GGTGA | 4 cut(s) | 461, 986, 1469, 2977 |
| Hpy166II | GTNNAC | 6 cut(s) | 293, 897, 1136, 1272, 1299, 2385 |
| Hpy8I | GTNNAC | 6 cut(s) | 293, 897, 1136, 1272, 1299, 2385 |
| Hpy99I | CGWCG | 5 cut(s) | 133, 164, 287, 650, 658 |
| HpyAV | CCTTC | 3 cut(s) | 1023, 2676, 3256 |
| HpyCH4III | ACNGT | 9 cut(s) | 650, 917, 947, 1333, 1503, 1569, 2719, 2799, 3011 |
| HpyCH4IV | ACGT | 7 cut(s) | 162, 173, 745, 1268, 1879, 2650, 2878 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 252, 641, 650, 1485, 1970, 1979, 2243, 2397, 2437 |
| HpySE526I | ACGT | 7 cut(s) | 162, 173, 745, 1268, 1879, 2650, 2878 |
| Hsp92I | GRCGYC | 2 cut(s) | 162, 2398 |
| HspAI | GCGC | 3 cut(s) | 137, 350, 2398 |
| KasI | GGCGCC | 1 cut(s) | 2397 |
| Kpn2I | TCCGGA | 1 cut(s) | 821 |
| LguI | GCTCTTC | 1 cut(s) | 1195 |
| LmnI | GCTCC | 8 cut(s) | 77, 243, 347, 802, 1627, 2243, 3076, 3285 |
| Lsp1109I | GCAGC | 9 cut(s) | 242, 922, 943, 1131, 2258, 2503, 2525, 2854, 2876 |
| MabI | ACCWGGT | 1 cut(s) | 477 |
| MaeI | CTAG | 7 cut(s) | 39, 639, 953, 1314, 2157, 2808, 3203 |
| MaeII | ACGT | 7 cut(s) | 162, 173, 745, 1268, 1879, 2650, 2878 |
| MaeIII | GTNAC | 5 cut(s) | 947, 1277, 1327, 1579, 2847 |
| MfeI | CAATTG | 2 cut(s) | 2373, 2472 |
| MflI | RGATCY | 3 cut(s) | 590, 818, 2599 |
| MhlI | GDGCHC | 5 cut(s) | 248, 799, 1190, 1624, 3032 |
| Mly113I | GGCGCC | 1 cut(s) | 2398 |
| MlyI | GAGTC | 7 cut(s) | 23, 66, 298, 385, 1670, 2438, 2561 |
| MmeI | TCCRAC | 4 cut(s) | 359, 1340, 2555, 2648 |
| Mph1103I | ATGCAT | 2 cut(s) | 2778, 2821 |
| MroI | TCCGGA | 1 cut(s) | 821 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1825, 3198 |
| MseI | TTAA | 5 cut(s) | 45, 372, 1104, 2051, 2903 |
| MslI | CAYNNNNRTG | 2 cut(s) | 2099, 2824 |
| MspA1I | CMGCKG | 3 cut(s) | 255, 2516, 2867 |
| MspI | CCGG | 6 cut(s) | 194, 218, 241, 521, 822, 1656 |
| MspR9I | CCNGG | 6 cut(s) | 218, 302, 479, 1143, 1818, 2872 |
| MunI | CAATTG | 2 cut(s) | 2373, 2472 |
| Mva1269I | GAATGC | 4 cut(s) | 1579, 2094, 2584, 2650 |
| MvaI | CCWGG | 5 cut(s) | 302, 479, 1143, 1818, 2872 |
| MvnI | CGCG | 2 cut(s) | 97, 282 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 252, 641, 650, 1485, 1970, 1979, 2243, 2397, 2437 |
| NarI | GGCGCC | 1 cut(s) | 2398 |
| NciI | CCSGG | 1 cut(s) | 218 |
| NlaIV | GGNNCC | 6 cut(s) | 245, 2301, 2399, 2801, 3066, 3287 |
| NmeAIII | GCCGAG | 1 cut(s) | 93 |
| NmuCI | GTSAC | 3 cut(s) | 947, 1277, 2847 |
| NsiI | ATGCAT | 2 cut(s) | 2778, 2821 |
| NspI | RCATGY | 2 cut(s) | 2291, 2345 |
| PagI | TCATGA | 2 cut(s) | 2587, 2731 |
| PceI | AGGCCT | 1 cut(s) | 2391 |
| PciI | ACATGT | 2 cut(s) | 2287, 2341 |
| PciSI | GCTCTTC | 1 cut(s) | 1195 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 179, 270, 709 |
| PctI | GAATGC | 4 cut(s) | 1579, 2094, 2584, 2650 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1825, 3198 |
| PflFI | GACNNNGTC | 1 cut(s) | 479 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1596 |
| PleI | GAGTC | 7 cut(s) | 23, 65, 297, 384, 1670, 2438, 2560 |
| PluTI | GGCGCC | 1 cut(s) | 2401 |
| PpsI | GAGTC | 7 cut(s) | 23, 65, 297, 384, 1670, 2438, 2560 |
| PscI | ACATGT | 2 cut(s) | 2287, 2341 |
| Psp124BI | GAGCTC | 2 cut(s) | 799, 1190 |
| Psp1406I | AACGTT | 1 cut(s) | 1268 |
| Psp6I | CCWGG | 5 cut(s) | 300, 477, 1141, 1816, 2870 |
| PspGI | CCWGG | 5 cut(s) | 300, 477, 1141, 1816, 2870 |
| PspN4I | GGNNCC | 6 cut(s) | 245, 2301, 2399, 2801, 3066, 3287 |
| PspPI | GGNCC | 5 cut(s) | 642, 1180, 1747, 1883, 2300 |
| PstI | CTGCAG | 2 cut(s) | 2406, 2521 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2516 |
| PsuI | RGATCY | 3 cut(s) | 590, 818, 2599 |
| PsyI | GACNNNGTC | 1 cut(s) | 479 |
| PvuII | CAGCTG | 2 cut(s) | 2516, 2867 |
| RsaI | GTAC | 4 cut(s) | 1072, 1815, 2274, 2386 |
| RsaNI | GTAC | 4 cut(s) | 1071, 1814, 2273, 2385 |
| RseI | CAYNNNNRTG | 2 cut(s) | 2099, 2824 |
| SacI | GAGCTC | 2 cut(s) | 799, 1190 |
| SalI | GTCGAC | 1 cut(s) | 291 |
| SapI | GCTCTTC | 1 cut(s) | 1195 |
| SaqAI | TTAA | 5 cut(s) | 45, 372, 1104, 2051, 2903 |
| Sau96I | GGNCC | 5 cut(s) | 642, 1180, 1747, 1883, 2300 |
| SbfI | CCTGCAGG | 1 cut(s) | 2406 |
| SchI | GAGTC | 7 cut(s) | 23, 66, 298, 385, 1670, 2438, 2561 |
| ScrFI | CCNGG | 6 cut(s) | 218, 302, 479, 1143, 1818, 2872 |
| SdaI | CCTGCAGG | 1 cut(s) | 2406 |
| SduI | GDGCHC | 5 cut(s) | 248, 799, 1190, 1624, 3032 |
| SexAI | ACCWGGT | 1 cut(s) | 477 |
| SfcI | CTRYAG | 2 cut(s) | 2402, 2517 |
| SfoI | GGCGCC | 1 cut(s) | 2399 |
| SinI | GGWCC | 3 cut(s) | 1180, 1883, 2300 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 2099, 2824 |
| SmlI | CTYRAG | 1 cut(s) | 688 |
| SmoI | CTYRAG | 1 cut(s) | 688 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 2406 |
| SseBI | AGGCCT | 1 cut(s) | 2391 |
| SspDI | GGCGCC | 1 cut(s) | 2397 |
| SspI | AATATT | 2 cut(s) | 1257, 1528 |
| SspMI | CTAG | 7 cut(s) | 39, 639, 953, 1314, 2157, 2808, 3203 |
| SstI | GAGCTC | 2 cut(s) | 799, 1190 |
| StuI | AGGCCT | 1 cut(s) | 2391 |
| StyD4I | CCNGG | 6 cut(s) | 216, 300, 477, 1141, 1816, 2870 |
| StyI | CCWWGG | 3 cut(s) | 586, 2239, 2781 |
| TaaI | ACNGT | 9 cut(s) | 650, 917, 947, 1333, 1503, 1569, 2719, 2799, 3011 |
| TaiI | ACGT | 7 cut(s) | 165, 176, 748, 1271, 1882, 2653, 2881 |
| TaqI | TCGA | 5 cut(s) | 144, 159, 292, 359, 793 |
| TaqII | GACCGA | 2 cut(s) | 200, 1745 |
| TatI | WGTACW | 1 cut(s) | 2384 |
| TauI | GCSGC | 5 cut(s) | 97, 137, 255, 282, 2372 |
| Tru1I | TTAA | 5 cut(s) | 45, 372, 1104, 2051, 2903 |
| Tru9I | TTAA | 5 cut(s) | 45, 372, 1104, 2051, 2903 |
| TscAI | CASTG | 8 cut(s) | 909, 920, 952, 1378, 1574, 1757, 2094, 2866 |
| TseFI | GTSAC | 3 cut(s) | 947, 1277, 2847 |
| TseI | GCWGC | 9 cut(s) | 255, 910, 956, 1119, 2246, 2513, 2516, 2864, 2867 |
| Tsp45I | GTSAC | 3 cut(s) | 947, 1277, 2847 |
| TspGWI | ACGGA | 2 cut(s) | 1088, 3245 |
| TspRI | CASTG | 8 cut(s) | 909, 920, 952, 1378, 1574, 1757, 2094, 2866 |
| Tth111I | GACNNNGTC | 1 cut(s) | 479 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1596 |
| VpaK11BI | GGWCC | 3 cut(s) | 1180, 1883, 2300 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 736, 2405 |
| XapI | RAATTY | 8 cut(s) | 705, 1039, 1403, 1552, 1907, 2306, 2492, 2504 |
| XbaI | TCTAGA | 1 cut(s) | 3202 |
| XceI | RCATGY | 2 cut(s) | 2291, 2345 |
| XmiI | GTMKAC | 2 cut(s) | 292, 1135 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1825, 3198 |
| XspI | CTAG | 7 cut(s) | 39, 639, 953, 1314, 2157, 2808, 3203 |
| ZraI | GACGTC | 1 cut(s) | 163 |
| Zsp2I | ATGCAT | 2 cut(s) | 2778, 2821 |