Tyrosyl-DNA phosphodiesterase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G07400 AT5G07400 AT5G07400 AT5G07400 AT5G07400 AT5G07400 AT5G07400 AT5G07400 |
| fragaria_vesca | FvH4_5g10030 |
| malus_domestica | MD06G1128300.v1.1 MD09G1063600.v1.1 |
| prunus_persica | Prupe.5G138100_v2.0.a1 |
| pyrus_communis | pycom06g11850 |
| rosa_chinensis | RchiOBHm_Chr7g0188231 |
| rosa_laevigata | RLG00000002473 RLG00000004716 |
| rosa_multiflora | Rmu_sc0008750.1_g000014 |
| rosa_roxburghii | Rroxscaffold_3G00266590 |
| rosa_rugosa | Rorug06G0489000 Rorug06G0489300 |
| rosa_samantha | Rh7AG093600 Rh7BG095000 Rh7CG095400 Rh7DG095500 Rh7DG095600 |
| rosa_wichuraiana | Rw7G008060 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 420, 1941 |
| AccB1I | GGYRCC | 1 cut(s) | 189 |
| AccI | GTMKAC | 1 cut(s) | 3390 |
| AclWI | GGATC | 8 cut(s) | 336, 705, 718, 934, 2026, 2648, 2923, 3080 |
| AcoI | YGGCCR | 1 cut(s) | 139 |
| AcsI | RAATTY | 5 cut(s) | 1020, 1660, 2009, 2588, 2633 |
| AcuI | CTGAAG | 5 cut(s) | 1017, 1050, 2281, 2483, 2664 |
| AcvI | CACGTG | 2 cut(s) | 256, 282 |
| AfaI | GTAC | 3 cut(s) | 238, 687, 1845 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 293, 775, 1768, 2475, 2571, 2663, 3200 |
| AflII | CTTAAG | 2 cut(s) | 817, 2090 |
| AflIII | ACRYGT | 1 cut(s) | 281 |
| AgeI | ACCGGT | 1 cut(s) | 293 |
| AjiI | CACGTC | 1 cut(s) | 271 |
| AjnI | CCWGG | 5 cut(s) | 1217, 1243, 1924, 1964, 2966 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2214, 2246 |
| Alw21I | GWGCWC | 3 cut(s) | 356, 678, 2483 |
| Alw44I | GTGCAC | 1 cut(s) | 2479 |
| AlwI | GGATC | 8 cut(s) | 336, 705, 718, 934, 2026, 2648, 2923, 3080 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2612 |
| Ama87I | CYCGRG | 4 cut(s) | 357, 768, 1328, 1547 |
| AoxI | GGCC | 8 cut(s) | 139, 1282, 1551, 1854, 2485, 2525, 2964, 3191 |
| ApaLI | GTGCAC | 1 cut(s) | 2479 |
| ApeKI | GCWGC | 7 cut(s) | 262, 2336, 2339, 2465, 2597, 2612, 2960 |
| ApoI | RAATTY | 5 cut(s) | 1020, 1660, 2009, 2588, 2633 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1652, 1684, 2531, 2563 |
| AsiGI | ACCGGT | 1 cut(s) | 293 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1495, 3294 |
| AspLEI | GCGC | 5 cut(s) | 458, 1730, 2561, 3113, 3128 |
| AspS9I | GGNCC | 7 cut(s) | 35, 250, 1282, 1615, 1855, 2396, 2485 |
| AsuC2I | CCSGG | 5 cut(s) | 326, 596, 769, 770, 933 |
| AsuHPI | GGTGA | 5 cut(s) | 191, 984, 1091, 2834, 3073 |
| AvaI | CYCGRG | 4 cut(s) | 357, 768, 1328, 1547 |
| AvaII | GGWCC | 4 cut(s) | 35, 250, 1615, 2396 |
| BaeGI | GKGCMC | 2 cut(s) | 194, 2483 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1827, 1860 |
| BamHI | GGATCC | 1 cut(s) | 710 |
| BanI | GGYRCC | 1 cut(s) | 189 |
| BbrPI | CACGTG | 2 cut(s) | 256, 282 |
| BbsI | GAAGAC | 3 cut(s) | 15, 367, 1185 |
| Bbv12I | GWGCWC | 3 cut(s) | 356, 678, 2483 |
| BbvCI | CCTCAGC | 2 cut(s) | 774, 2807 |
| BbvI | GCAGC | 7 cut(s) | 274, 2348, 2351, 2452, 2584, 2599, 2972 |
| BccI | CCATC | 9 cut(s) | 581, 793, 1130, 1190, 1434, 1605, 1760, 2707, 3098 |
| BceAI | ACGGC | 4 cut(s) | 154, 255, 372, 469 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 447, 481 |
| BciT130I | CCWGG | 5 cut(s) | 1219, 1245, 1926, 1966, 2968 |
| BclI | TGATCA | 1 cut(s) | 1984 |
| BcnI | CCSGG | 5 cut(s) | 326, 596, 769, 770, 933 |
| BfaI | CTAG | 6 cut(s) | 1422, 1848, 2250, 2679, 3014, 3030 |
| BfmI | CTRYAG | 4 cut(s) | 2034, 2175, 2613, 2814 |
| BfoI | RGCGCY | 1 cut(s) | 3114 |
| BfrI | CTTAAG | 2 cut(s) | 817, 2090 |
| BisI | GCNGC | 8 cut(s) | 263, 2337, 2340, 2466, 2598, 2613, 2961, 2964 |
| BlpI | GCTNAGC | 1 cut(s) | 842 |
| BlsI | GCNGC | 8 cut(s) | 264, 2338, 2341, 2467, 2599, 2614, 2962, 2965 |
| Bme18I | GGWCC | 4 cut(s) | 35, 250, 1615, 2396 |
| BmeT110I | CYCGRG | 4 cut(s) | 357, 768, 1328, 1547 |
| BmgBI | CACGTC | 1 cut(s) | 271 |
| BmgT120I | GGNCC | 7 cut(s) | 35, 250, 1282, 1615, 1855, 2396, 2485 |
| BmiI | GGNNCC | 6 cut(s) | 191, 471, 712, 2397, 2944, 3383 |
| BmsI | GCATC | 7 cut(s) | 1543, 2039, 2170, 2570, 2731, 2821, 3033 |
| BpiI | GAAGAC | 3 cut(s) | 15, 367, 1185 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2210, 2242 |
| BpmI | CTGGAG | 2 cut(s) | 43, 1947 |
| Bpu10I | CCTNAGC | 2 cut(s) | 774, 2807 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 842 |
| BpuEI | CTTGAG | 2 cut(s) | 1092, 1166 |
| BpuMI | CCSGG | 5 cut(s) | 326, 596, 769, 770, 933 |
| Bsa29I | ATCGAT | 1 cut(s) | 487 |
| BsaAI | YACGTR | 2 cut(s) | 256, 282 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1140 |
| BsaI | GGTCTC | 5 cut(s) | 208, 585, 604, 941, 2275 |
| BsaJI | CCNNGG | 7 cut(s) | 114, 740, 768, 1548, 1718, 2014, 2967 |
| BsaWI | WCCGGW | 3 cut(s) | 293, 301, 713 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 293, 775, 1768, 2475, 2571, 2663, 3200 |
| Bse118I | RCCGGY | 1 cut(s) | 293 |
| Bse1I | ACTGG | 4 cut(s) | 1433, 1865, 1906, 2103 |
| Bse3DI | GCAATG | 4 cut(s) | 403, 853, 2068, 2755 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1140 |
| BseBI | CCWGG | 5 cut(s) | 1219, 1245, 1926, 1966, 2968 |
| BseCI | ATCGAT | 1 cut(s) | 487 |
| BseDI | CCNNGG | 7 cut(s) | 114, 740, 768, 1548, 1718, 2014, 2967 |
| BseJI | GATNNNNATC | 1 cut(s) | 1140 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 293, 775, 1768, 2475, 2571, 2663, 3200 |
| BseMI | GCAATG | 4 cut(s) | 403, 853, 2068, 2755 |
| BseMII | CTCAG | 7 cut(s) | 609, 765, 1110, 1820, 2778, 2798, 3267 |
| BseNI | ACTGG | 4 cut(s) | 1433, 1865, 1906, 2103 |
| BseRI | GAGGAG | 3 cut(s) | 189, 3198, 3368 |
| BseSI | GKGCMC | 2 cut(s) | 194, 2483 |
| BseXI | GCAGC | 7 cut(s) | 274, 2348, 2351, 2452, 2584, 2599, 2972 |
| BsgI | GTGCAG | 4 cut(s) | 847, 1243, 1367, 2979 |
| Bsh1285I | CGRYCG | 4 cut(s) | 212, 306, 345, 385 |
| BshFI | GGCC | 8 cut(s) | 141, 1284, 1553, 1856, 2487, 2527, 2966, 3193 |
| BshNI | GGYRCC | 1 cut(s) | 189 |
| BshTI | ACCGGT | 1 cut(s) | 293 |
| BshVI | ATCGAT | 1 cut(s) | 487 |
| BsiEI | CGRYCG | 4 cut(s) | 212, 306, 345, 385 |
| BsiHKAI | GWGCWC | 3 cut(s) | 356, 678, 2483 |
| BsiHKCI | CYCGRG | 4 cut(s) | 357, 768, 1328, 1547 |
| BsiSI | CCGG | 8 cut(s) | 287, 294, 302, 326, 595, 714, 769, 932 |
| BslFI | GGGAC | 4 cut(s) | 759, 1729, 2409, 2985 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 293, 775, 1768, 2475, 2571, 2663, 3200 |
| BsmBI | CGTCTC | 2 cut(s) | 323, 2884 |
| BsmFI | GGGAC | 4 cut(s) | 759, 1729, 2409, 2985 |
| BsmI | GAATGC | 2 cut(s) | 1687, 2772 |
| BsnI | GGCC | 8 cut(s) | 141, 1284, 1553, 1856, 2487, 2527, 2966, 3193 |
| Bso31I | GGTCTC | 5 cut(s) | 208, 585, 604, 941, 2275 |
| BsoBI | CYCGRG | 4 cut(s) | 357, 768, 1328, 1547 |
| Bsp1286I | GDGCHC | 4 cut(s) | 194, 356, 678, 2483 |
| Bsp1407I | TGTACA | 1 cut(s) | 685 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 842 |
| Bsp19I | CCATGG | 1 cut(s) | 114 |
| BspANI | GGCC | 8 cut(s) | 141, 1284, 1553, 1856, 2487, 2527, 2966, 3193 |
| BspCNI | CTCAG | 7 cut(s) | 610, 766, 1111, 1819, 2779, 2799, 3268 |
| BspDI | ATCGAT | 1 cut(s) | 487 |
| BspHI | TCATGA | 1 cut(s) | 2827 |
| BspLI | GGNNCC | 6 cut(s) | 191, 471, 712, 2397, 2944, 3383 |
| BspMAI | CTGCAG | 2 cut(s) | 2179, 2617 |
| BspPI | GGATC | 8 cut(s) | 336, 705, 718, 934, 2026, 2648, 2923, 3080 |
| BspQI | GCTCTTC | 1 cut(s) | 796 |
| BspT107I | GGYRCC | 1 cut(s) | 189 |
| BspTI | CTTAAG | 2 cut(s) | 817, 2090 |
| BspTNI | GGTCTC | 5 cut(s) | 208, 585, 604, 941, 2275 |
| BsrDI | GCAATG | 4 cut(s) | 403, 853, 2068, 2755 |
| BsrFI | RCCGGY | 1 cut(s) | 293 |
| BsrGI | TGTACA | 1 cut(s) | 685 |
| BsrI | ACTGG | 4 cut(s) | 1433, 1865, 1906, 2103 |
| BssAI | RCCGGY | 1 cut(s) | 293 |
| BssECI | CCNNGG | 7 cut(s) | 114, 740, 768, 1548, 1718, 2014, 2967 |
| BssT1I | CCWWGG | 3 cut(s) | 114, 740, 2014 |
| Bst2UI | CCWGG | 5 cut(s) | 1219, 1245, 1926, 1966, 2968 |
| Bst4CI | ACNGT | 4 cut(s) | 189, 441, 1699, 2280 |
| Bst6I | CTCTTC | 8 cut(s) | 495, 796, 1297, 2300, 2640, 3285, 3336, 3345 |
| BstAFI | CTTAAG | 2 cut(s) | 817, 2090 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 838, 2778 |
| BstAUI | TGTACA | 1 cut(s) | 685 |
| BstBAI | YACGTR | 2 cut(s) | 256, 282 |
| BstC8I | GCNNGC | 8 cut(s) | 206, 830, 1594, 1812, 1980, 2746, 3165, 3195 |
| BstDEI | CTNAG | 9 cut(s) | 618, 774, 842, 1119, 1806, 2045, 2787, 2807, 3276 |
| BstDSI | CCRYGG | 1 cut(s) | 114 |
| BstH2I | RGCGCY | 1 cut(s) | 3114 |
| BstHHI | GCGC | 5 cut(s) | 458, 1730, 2561, 3113, 3128 |
| BstMCI | CGRYCG | 4 cut(s) | 212, 306, 345, 385 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 239, 271, 770, 838, 1975, 2336, 2778 |
| BstNI | CCWGG | 5 cut(s) | 1219, 1245, 1926, 1966, 2968 |
| BstNSI | RCATGY | 3 cut(s) | 2132, 2387, 2748 |
| BstSFI | CTRYAG | 4 cut(s) | 2034, 2175, 2613, 2814 |
| BstSLI | GKGCMC | 2 cut(s) | 194, 2483 |
| BstV1I | GCAGC | 7 cut(s) | 274, 2348, 2351, 2452, 2584, 2599, 2972 |
| BstV2I | GAAGAC | 3 cut(s) | 15, 367, 1185 |
| BstX2I | RGATCY | 4 cut(s) | 710, 926, 2018, 2915 |
| BstYI | RGATCY | 4 cut(s) | 710, 926, 2018, 2915 |
| Bsu15I | ATCGAT | 1 cut(s) | 487 |
| BsuRI | GGCC | 8 cut(s) | 141, 1284, 1553, 1856, 2487, 2527, 2966, 3193 |
| BsuTUI | ATCGAT | 1 cut(s) | 487 |
| BtgI | CCRYGG | 1 cut(s) | 114 |
| BtrI | CACGTC | 1 cut(s) | 271 |
| BtsI | GCAGTG | 4 cut(s) | 1012, 1682, 1692, 2196 |
| BtsIMutI | CAGTG | 7 cut(s) | 1012, 1682, 1692, 1858, 2196, 2276, 2962 |
| Cac8I | GCNNGC | 8 cut(s) | 206, 830, 1594, 1812, 1980, 2746, 3165, 3195 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2612 |
| CciI | TCATGA | 1 cut(s) | 2827 |
| CfoI | GCGC | 5 cut(s) | 458, 1730, 2561, 3113, 3128 |
| Cfr10I | RCCGGY | 1 cut(s) | 293 |
| Cfr13I | GGNCC | 7 cut(s) | 35, 250, 1282, 1615, 1855, 2396, 2485 |
| Cfr9I | CCCGGG | 1 cut(s) | 768 |
| ClaI | ATCGAT | 1 cut(s) | 487 |
| CseI | GACGC | 2 cut(s) | 1983, 2901 |
| CsiI | ACCWGGT | 1 cut(s) | 1217 |
| Csp6I | GTAC | 3 cut(s) | 237, 686, 1844 |
| CspAI | ACCGGT | 1 cut(s) | 293 |
| CviQI | GTAC | 3 cut(s) | 237, 686, 1844 |
| DdeI | CTNAG | 9 cut(s) | 618, 774, 842, 1119, 1806, 2045, 2787, 2807, 3276 |
| DraI | TTTAAA | 1 cut(s) | 3000 |
| EaeI | YGGCCR | 1 cut(s) | 139 |
| Eam1104I | CTCTTC | 8 cut(s) | 495, 796, 1297, 2300, 2640, 3285, 3336, 3345 |
| EarI | CTCTTC | 8 cut(s) | 495, 796, 1297, 2300, 2640, 3285, 3336, 3345 |
| EciI | GGCGGA | 3 cut(s) | 20, 364, 3338 |
| Eco130I | CCWWGG | 3 cut(s) | 114, 740, 2014 |
| Eco31I | GGTCTC | 5 cut(s) | 208, 585, 604, 941, 2275 |
| Eco32I | GATATC | 1 cut(s) | 2287 |
| Eco47I | GGWCC | 4 cut(s) | 35, 250, 1615, 2396 |
| Eco57I | CTGAAG | 5 cut(s) | 1017, 1050, 2281, 2483, 2664 |
| Eco72I | CACGTG | 2 cut(s) | 256, 282 |
| Eco88I | CYCGRG | 4 cut(s) | 357, 768, 1328, 1547 |
| EcoRI | GAATTC | 1 cut(s) | 2633 |
| EcoRII | CCWGG | 5 cut(s) | 1217, 1243, 1924, 1964, 2966 |
| EcoRV | GATATC | 1 cut(s) | 2287 |
| EcoT14I | CCWWGG | 3 cut(s) | 114, 740, 2014 |
| EcoT22I | ATGCAT | 1 cut(s) | 2746 |
| ErhI | CCWWGG | 3 cut(s) | 114, 740, 2014 |
| Esp3I | CGTCTC | 2 cut(s) | 323, 2884 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1480, 1512, 2316, 2348 |
| FaqI | GGGAC | 4 cut(s) | 759, 1729, 2409, 2985 |
| FbaI | TGATCA | 1 cut(s) | 1984 |
| FblI | GTMKAC | 1 cut(s) | 3390 |
| Fnu4HI | GCNGC | 8 cut(s) | 263, 2337, 2340, 2466, 2598, 2613, 2961, 2964 |
| Fsp4HI | GCNGC | 8 cut(s) | 263, 2337, 2340, 2466, 2598, 2613, 2961, 2964 |
| FspBI | CTAG | 6 cut(s) | 1422, 1848, 2250, 2679, 3014, 3030 |
| GlaI | GCGC | 5 cut(s) | 457, 1729, 2560, 3112, 3127 |
| GluI | GCNGC | 8 cut(s) | 263, 2337, 2340, 2466, 2598, 2613, 2961, 2964 |
| GsuI | CTGGAG | 2 cut(s) | 43, 1947 |
| HaeII | RGCGCY | 1 cut(s) | 3114 |
| HaeIII | GGCC | 8 cut(s) | 141, 1284, 1553, 1856, 2487, 2527, 2966, 3193 |
| HapII | CCGG | 8 cut(s) | 287, 294, 302, 326, 595, 714, 769, 932 |
| HgaI | GACGC | 2 cut(s) | 1983, 2901 |
| HhaI | GCGC | 5 cut(s) | 458, 1730, 2561, 3113, 3128 |
| Hin6I | GCGC | 5 cut(s) | 456, 1728, 2559, 3111, 3126 |
| HinP1I | GCGC | 5 cut(s) | 456, 1728, 2559, 3111, 3126 |
| HincII | GTYRAC | 1 cut(s) | 1671 |
| HindII | GTYRAC | 1 cut(s) | 1671 |
| HindIII | AAGCTT | 1 cut(s) | 2087 |
| HpaII | CCGG | 8 cut(s) | 287, 294, 302, 326, 595, 714, 769, 932 |
| HphI | GGTGA | 5 cut(s) | 191, 984, 1091, 2834, 3073 |
| Hpy166II | GTNNAC | 8 cut(s) | 253, 719, 1029, 1167, 1671, 2126, 2481, 3391 |
| Hpy8I | GTNNAC | 8 cut(s) | 253, 719, 1029, 1167, 1671, 2126, 2481, 3391 |
| Hpy99I | CGWCG | 3 cut(s) | 173, 272, 455 |
| HpyAV | CCTTC | 5 cut(s) | 557, 2731, 2772, 3340, 3352 |
| HpyCH4III | ACNGT | 4 cut(s) | 189, 441, 1699, 2280 |
| HpyCH4IV | ACGT | 5 cut(s) | 255, 270, 281, 748, 1742 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 239, 271, 770, 838, 1975, 2336, 2778 |
| HpyF3I | CTNAG | 9 cut(s) | 618, 774, 842, 1119, 1806, 2045, 2787, 2807, 3276 |
| HpySE526I | ACGT | 5 cut(s) | 255, 270, 281, 748, 1742 |
| HspAI | GCGC | 5 cut(s) | 456, 1728, 2559, 3111, 3126 |
| Ksp22I | TGATCA | 1 cut(s) | 1984 |
| LguI | GCTCTTC | 1 cut(s) | 796 |
| LmnI | GCTCC | 3 cut(s) | 351, 3172, 3381 |
| Lsp1109I | GCAGC | 7 cut(s) | 274, 2348, 2351, 2452, 2584, 2599, 2972 |
| LweI | GCATC | 7 cut(s) | 1543, 2039, 2170, 2570, 2731, 2821, 3033 |
| MabI | ACCWGGT | 1 cut(s) | 1217 |
| MaeI | CTAG | 6 cut(s) | 1422, 1848, 2250, 2679, 3014, 3030 |
| MaeII | ACGT | 5 cut(s) | 255, 270, 281, 748, 1742 |
| MaeIII | GTNAC | 4 cut(s) | 1385, 1435, 1687, 2388 |
| MfeI | CAATTG | 3 cut(s) | 1440, 2145, 2568 |
| MflI | RGATCY | 4 cut(s) | 710, 926, 2018, 2915 |
| MhlI | GDGCHC | 4 cut(s) | 194, 356, 678, 2483 |
| MlyI | GAGTC | 9 cut(s) | 1778, 2066, 2204, 2219, 2286, 2534, 2648, 2657, 3386 |
| MmeI | TCCRAC | 6 cut(s) | 564, 778, 1448, 1938, 2651, 2744 |
| Mph1103I | ATGCAT | 1 cut(s) | 2746 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1495, 3294 |
| MseI | TTAA | 7 cut(s) | 657, 818, 960, 2091, 2153, 2706, 2999 |
| MslI | CAYNNNNRTG | 3 cut(s) | 979, 1047, 2110 |
| MspA1I | CMGCKG | 2 cut(s) | 1810, 2963 |
| MspCI | CTTAAG | 2 cut(s) | 817, 2090 |
| MspI | CCGG | 8 cut(s) | 287, 294, 302, 326, 595, 714, 769, 932 |
| MssI | GTTTAAAC | 1 cut(s) | 3000 |
| MunI | CAATTG | 3 cut(s) | 1440, 2145, 2568 |
| Mva1269I | GAATGC | 2 cut(s) | 1687, 2772 |
| MvaI | CCWGG | 5 cut(s) | 1219, 1245, 1926, 1966, 2968 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 239, 271, 770, 838, 1975, 2336, 2778 |
| NciI | CCSGG | 5 cut(s) | 326, 596, 769, 770, 933 |
| NcoI | CCATGG | 1 cut(s) | 114 |
| NlaIV | GGNNCC | 6 cut(s) | 191, 471, 712, 2397, 2944, 3383 |
| NmeAIII | GCCGAG | 1 cut(s) | 246 |
| NmuCI | GTSAC | 3 cut(s) | 1385, 1687, 2388 |
| NsiI | ATGCAT | 1 cut(s) | 2746 |
| NspI | RCATGY | 3 cut(s) | 2132, 2387, 2748 |
| PaeI | GCATGC | 1 cut(s) | 2748 |
| PagI | TCATGA | 1 cut(s) | 2827 |
| PciSI | GCTCTTC | 1 cut(s) | 796 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 378 |
| PctI | GAATGC | 2 cut(s) | 1687, 2772 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1495, 3294 |
| PflFI | GACNNNGTC | 1 cut(s) | 596 |
| PfoI | TCCNGGA | 1 cut(s) | 1924 |
| PinAI | ACCGGT | 1 cut(s) | 293 |
| PkrI | GCNGC | 8 cut(s) | 264, 2338, 2341, 2467, 2599, 2614, 2962, 2965 |
| Ple19I | CGATCG | 2 cut(s) | 345, 385 |
| PleI | GAGTC | 9 cut(s) | 1778, 2066, 2204, 2219, 2286, 2534, 2647, 2656, 3386 |
| PmaCI | CACGTG | 2 cut(s) | 256, 282 |
| PmeI | GTTTAAAC | 1 cut(s) | 3000 |
| PmlI | CACGTG | 2 cut(s) | 256, 282 |
| PpsI | GAGTC | 9 cut(s) | 1778, 2066, 2204, 2219, 2286, 2534, 2647, 2656, 3386 |
| Ppu21I | YACGTR | 2 cut(s) | 256, 282 |
| PsiI | TTATAA | 2 cut(s) | 420, 1941 |
| Psp6I | CCWGG | 5 cut(s) | 1217, 1243, 1924, 1964, 2966 |
| PspCI | CACGTG | 2 cut(s) | 256, 282 |
| PspGI | CCWGG | 5 cut(s) | 1217, 1243, 1924, 1964, 2966 |
| PspN4I | GGNNCC | 6 cut(s) | 191, 471, 712, 2397, 2944, 3383 |
| PspPI | GGNCC | 7 cut(s) | 35, 250, 1282, 1615, 1855, 2396, 2485 |
| PstI | CTGCAG | 2 cut(s) | 2179, 2617 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2612 |
| PsuI | RGATCY | 4 cut(s) | 710, 926, 2018, 2915 |
| PsyI | GACNNNGTC | 1 cut(s) | 596 |
| PvuI | CGATCG | 2 cut(s) | 345, 385 |
| PvuII | CAGCTG | 1 cut(s) | 1810 |
| RsaI | GTAC | 3 cut(s) | 238, 687, 1845 |
| RsaNI | GTAC | 3 cut(s) | 237, 686, 1844 |
| RseI | CAYNNNNRTG | 3 cut(s) | 979, 1047, 2110 |
| SapI | GCTCTTC | 1 cut(s) | 796 |
| SaqAI | TTAA | 7 cut(s) | 657, 818, 960, 2091, 2153, 2706, 2999 |
| SatI | GCNGC | 8 cut(s) | 263, 2337, 2340, 2466, 2598, 2613, 2961, 2964 |
| Sau96I | GGNCC | 7 cut(s) | 35, 250, 1282, 1615, 1855, 2396, 2485 |
| SchI | GAGTC | 9 cut(s) | 1778, 2066, 2204, 2219, 2286, 2534, 2648, 2657, 3386 |
| SduI | GDGCHC | 4 cut(s) | 194, 356, 678, 2483 |
| SexAI | ACCWGGT | 1 cut(s) | 1217 |
| SfaNI | GCATC | 7 cut(s) | 1543, 2039, 2170, 2570, 2731, 2821, 3033 |
| SfcI | CTRYAG | 4 cut(s) | 2034, 2175, 2613, 2814 |
| SinI | GGWCC | 4 cut(s) | 35, 250, 1615, 2396 |
| SmaI | CCCGGG | 1 cut(s) | 770 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 979, 1047, 2110 |
| SmlI | CTYRAG | 4 cut(s) | 817, 1107, 1145, 2090 |
| SmoI | CTYRAG | 4 cut(s) | 817, 1107, 1145, 2090 |
| SphI | GCATGC | 1 cut(s) | 2748 |
| SspI | AATATT | 2 cut(s) | 2197, 3142 |
| SspMI | CTAG | 6 cut(s) | 1422, 1848, 2250, 2679, 3014, 3030 |
| StyI | CCWWGG | 3 cut(s) | 114, 740, 2014 |
| TaaI | ACNGT | 4 cut(s) | 189, 441, 1699, 2280 |
| TaiI | ACGT | 5 cut(s) | 258, 273, 284, 751, 1745 |
| TaqI | TCGA | 7 cut(s) | 267, 306, 450, 487, 939, 1780, 2637 |
| TaqII | GACCGA | 3 cut(s) | 226, 238, 2030 |
| TatI | WGTACW | 1 cut(s) | 685 |
| TauI | GCSGC | 1 cut(s) | 2966 |
| Tru1I | TTAA | 7 cut(s) | 657, 818, 960, 2091, 2153, 2706, 2999 |
| Tru9I | TTAA | 7 cut(s) | 657, 818, 960, 2091, 2153, 2706, 2999 |
| TscAI | CASTG | 7 cut(s) | 1012, 1682, 1692, 1865, 2196, 2283, 2962 |
| TseFI | GTSAC | 3 cut(s) | 1385, 1687, 2388 |
| TseI | GCWGC | 7 cut(s) | 262, 2336, 2339, 2465, 2597, 2612, 2960 |
| Tsp45I | GTSAC | 3 cut(s) | 1385, 1687, 2388 |
| TspDTI | ATGAA | 9 cut(s) | 1488, 1922, 2094, 2816, 2910, 3020, 3038, 3078, 3324 |
| TspGWI | ACGGA | 5 cut(s) | 186, 1303, 2902, 2928, 3110 |
| TspMI | CCCGGG | 1 cut(s) | 768 |
| TspRI | CASTG | 7 cut(s) | 1012, 1682, 1692, 1865, 2196, 2283, 2962 |
| Tth111I | GACNNNGTC | 1 cut(s) | 596 |
| Vha464I | CTTAAG | 2 cut(s) | 817, 2090 |
| VneI | GTGCAC | 1 cut(s) | 2479 |
| VpaK11BI | GGWCC | 4 cut(s) | 35, 250, 1615, 2396 |
| XapI | RAATTY | 5 cut(s) | 1020, 1660, 2009, 2588, 2633 |
| XceI | RCATGY | 3 cut(s) | 2132, 2387, 2748 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3031 |
| XmaI | CCCGGG | 1 cut(s) | 768 |
| XmiI | GTMKAC | 1 cut(s) | 3390 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1495, 3294 |
| XspI | CTAG | 6 cut(s) | 1422, 1848, 2250, 2679, 3014, 3030 |
| Zsp2I | ATGCAT | 1 cut(s) | 2746 |