Tyrosyl-DNA phosphodiesterase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G07400 AT5G07400 AT5G07400 AT5G07400 AT5G07400 AT5G07400 AT5G07400 AT5G07400 |
| fragaria_vesca | FvH4_5g10030 |
| malus_domestica | MD06G1128300.v1.1 MD09G1063600.v1.1 |
| prunus_persica | Prupe.5G138100_v2.0.a1 |
| pyrus_communis | pycom06g11850 |
| rosa_chinensis | RchiOBHm_Chr7g0188231 |
| rosa_laevigata | RLG00000002473 RLG00000004716 |
| rosa_multiflora | Rmu_sc0008750.1_g000014 |
| rosa_roxburghii | Rroxscaffold_3G00266590 |
| rosa_rugosa | Rorug06G0489000 Rorug06G0489300 |
| rosa_samantha | Rh7AG093600 Rh7BG095000 Rh7CG095400 Rh7DG095500 Rh7DG095600 |
| rosa_wichuraiana | Rw7G008060 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 281 |
| AatII | GACGTC | 1 cut(s) | 165 |
| AccB1I | GGYRCC | 2 cut(s) | 2322, 2989 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1539 |
| AccI | GTMKAC | 1 cut(s) | 292 |
| AccII | CGCG | 2 cut(s) | 97, 282 |
| AccIII | TCCGGA | 1 cut(s) | 821 |
| AclI | AACGTT | 1 cut(s) | 1211 |
| AclWI | GGATC | 9 cut(s) | 228, 598, 813, 847, 1846, 2477, 2519, 2874, 2909 |
| AcoI | YGGCCR | 1 cut(s) | 238 |
| AcsI | RAATTY | 8 cut(s) | 705, 1039, 1346, 1495, 1829, 2231, 2417, 2429 |
| AcuI | CTGAAG | 4 cut(s) | 885, 918, 1931, 2767 |
| AcyI | GRCGYC | 2 cut(s) | 162, 2323 |
| AdeI | CACNNNGTG | 1 cut(s) | 2579 |
| AfaI | GTAC | 4 cut(s) | 1659, 1737, 2199, 2311 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 217, 240, 738, 1539, 2332, 2492 |
| AflIII | ACRYGT | 3 cut(s) | 743, 2212, 2266 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 652 |
| AjiI | CACGTC | 1 cut(s) | 174 |
| AjnI | CCWGG | 5 cut(s) | 300, 477, 1084, 1738, 2795 |
| Alw21I | GWGCWC | 4 cut(s) | 799, 1133, 1567, 2957 |
| Alw26I | GTCTC | 6 cut(s) | 100, 468, 487, 2107, 2921, 3009 |
| AlwI | GGATC | 9 cut(s) | 228, 598, 813, 847, 1846, 2477, 2519, 2874, 2909 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2441 |
| Ama87I | CYCGRG | 2 cut(s) | 103, 2897 |
| Aor13HI | TCCGGA | 1 cut(s) | 821 |
| AoxI | GGCC | 8 cut(s) | 224, 238, 642, 1386, 1668, 2314, 2354, 3020 |
| ApeKI | GCWGC | 8 cut(s) | 255, 910, 956, 2171, 2438, 2441, 2789, 2792 |
| ApoI | RAATTY | 8 cut(s) | 705, 1039, 1346, 1495, 1829, 2231, 2417, 2429 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2360, 2392 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1747, 3123 |
| AspLEI | GCGC | 2 cut(s) | 139, 2325 |
| AspS9I | GGNCC | 5 cut(s) | 642, 1123, 1669, 1805, 2225 |
| AsuC2I | CCSGG | 1 cut(s) | 218 |
| AsuHPI | GGTGA | 4 cut(s) | 461, 986, 1412, 2902 |
| AvaI | CYCGRG | 2 cut(s) | 103, 2897 |
| AvaII | GGWCC | 3 cut(s) | 1123, 1805, 2225 |
| AxyI | CCTNAGG | 3 cut(s) | 612, 1383, 2154 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1641, 1674 |
| BanI | GGYRCC | 2 cut(s) | 2322, 2989 |
| BanII | GRGCYC | 3 cut(s) | 248, 799, 1133 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2637, 2669 |
| BauI | CACGAG | 1 cut(s) | 1023 |
| BbsI | GAAGAC | 6 cut(s) | 168, 651, 924, 1410, 2385, 2725 |
| Bbv12I | GWGCWC | 4 cut(s) | 799, 1133, 1567, 2957 |
| BbvCI | CCTCAGC | 1 cut(s) | 2636 |
| BbvI | GCAGC | 8 cut(s) | 242, 922, 943, 2183, 2428, 2450, 2779, 2801 |
| BceAI | ACGGC | 2 cut(s) | 147, 2216 |
| BciT130I | CCWGG | 5 cut(s) | 302, 479, 1086, 1740, 2797 |
| BciVI | GTATCC | 1 cut(s) | 1380 |
| BcnI | CCSGG | 1 cut(s) | 218 |
| BcoDI | GTCTC | 6 cut(s) | 100, 468, 487, 2107, 2921, 3009 |
| BfaI | CTAG | 6 cut(s) | 39, 639, 1257, 2082, 2733, 3128 |
| BfmI | CTRYAG | 2 cut(s) | 2327, 2442 |
| BfoI | RGCGCY | 2 cut(s) | 140, 2326 |
| BfuI | GTATCC | 1 cut(s) | 1380 |
| Bme1390I | CCNGG | 6 cut(s) | 218, 302, 479, 1086, 1740, 2797 |
| Bme18I | GGWCC | 3 cut(s) | 1123, 1805, 2225 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 652 |
| BmeT110I | CYCGRG | 2 cut(s) | 103, 2897 |
| BmgBI | CACGTC | 1 cut(s) | 174 |
| BmgT120I | GGNCC | 5 cut(s) | 642, 1123, 1669, 1805, 2225 |
| BmiI | GGNNCC | 6 cut(s) | 245, 2226, 2324, 2726, 2991, 3212 |
| BmrFI | CCNGG | 6 cut(s) | 218, 302, 479, 1086, 1740, 2797 |
| BmrI | ACTGGG | 1 cut(s) | 1666 |
| BmuI | ACTGGG | 1 cut(s) | 1666 |
| BpiI | GAAGAC | 6 cut(s) | 168, 651, 924, 1410, 2385, 2725 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2636 |
| BpuEI | CTTGAG | 1 cut(s) | 709 |
| BpuMI | CCSGG | 1 cut(s) | 218 |
| BsaHI | GRCGYC | 2 cut(s) | 162, 2323 |
| BsaI | GGTCTC | 4 cut(s) | 100, 468, 487, 2107 |
| BsaJI | CCNNGG | 5 cut(s) | 586, 1834, 2164, 2706, 2796 |
| BsaWI | WCCGGW | 3 cut(s) | 193, 520, 821 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 175, 205, 339, 367, 369, 397, 465, 495 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 217, 240, 738, 1539, 2332, 2492 |
| Bse1I | ACTGG | 5 cut(s) | 505, 1268, 1672, 1923, 2728 |
| Bse21I | CCTNAGG | 3 cut(s) | 612, 1383, 2154 |
| Bse3DI | GCAATG | 5 cut(s) | 295, 772, 880, 1719, 2088 |
| BseAI | TCCGGA | 1 cut(s) | 821 |
| BseBI | CCWGG | 5 cut(s) | 302, 479, 1086, 1740, 2797 |
| BseDI | CCNNGG | 5 cut(s) | 586, 1834, 2164, 2706, 2796 |
| BseGI | GGATG | 9 cut(s) | 623, 1174, 1435, 2122, 2501, 2528, 2692, 2971, 3218 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 217, 240, 738, 1539, 2332, 2492 |
| BseMI | GCAATG | 5 cut(s) | 295, 772, 880, 1719, 2088 |
| BseMII | CTCAG | 9 cut(s) | 1374, 1945, 2037, 2364, 2463, 2478, 2607, 2627, 3189 |
| BseNI | ACTGG | 5 cut(s) | 505, 1268, 1672, 1923, 2728 |
| BseRI | GAGGAG | 2 cut(s) | 2489, 3027 |
| BseX3I | CGGCCG | 1 cut(s) | 238 |
| BseXI | GCAGC | 8 cut(s) | 242, 922, 943, 2183, 2428, 2450, 2779, 2801 |
| BsgI | GTGCAG | 4 cut(s) | 718, 911, 1317, 2808 |
| Bsh1236I | CGCG | 2 cut(s) | 97, 282 |
| Bsh1285I | CGRYCG | 3 cut(s) | 186, 241, 277 |
| BshFI | GGCC | 8 cut(s) | 226, 240, 644, 1388, 1670, 2316, 2356, 3022 |
| BshNI | GGYRCC | 2 cut(s) | 2322, 2989 |
| BsiEI | CGRYCG | 3 cut(s) | 186, 241, 277 |
| BsiHKAI | GWGCWC | 4 cut(s) | 799, 1133, 1567, 2957 |
| BsiHKCI | CYCGRG | 2 cut(s) | 103, 2897 |
| BsiSI | CCGG | 5 cut(s) | 194, 218, 241, 521, 822 |
| BslFI | GGGAC | 5 cut(s) | 149, 1060, 1731, 2238, 2814 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 217, 240, 738, 1539, 2332, 2492 |
| BsmAI | GTCTC | 6 cut(s) | 100, 468, 487, 2107, 2921, 3009 |
| BsmFI | GGGAC | 5 cut(s) | 149, 1060, 1731, 2238, 2814 |
| BsmI | GAATGC | 4 cut(s) | 1522, 2016, 2509, 2575 |
| BsnI | GGCC | 8 cut(s) | 226, 240, 644, 1388, 1670, 2316, 2356, 3022 |
| Bso31I | GGTCTC | 4 cut(s) | 100, 468, 487, 2107 |
| BsoBI | CYCGRG | 2 cut(s) | 103, 2897 |
| Bsp1286I | GDGCHC | 5 cut(s) | 248, 799, 1133, 1567, 2957 |
| Bsp13I | TCCGGA | 1 cut(s) | 821 |
| Bsp1407I | TGTACA | 1 cut(s) | 2309 |
| BspANI | GGCC | 8 cut(s) | 226, 240, 644, 1388, 1670, 2316, 2356, 3022 |
| BspCNI | CTCAG | 9 cut(s) | 1375, 1944, 2038, 2365, 2464, 2479, 2608, 2628, 3190 |
| BspEI | TCCGGA | 1 cut(s) | 821 |
| BspFNI | CGCG | 2 cut(s) | 97, 282 |
| BspHI | TCATGA | 2 cut(s) | 2512, 2656 |
| BspLI | GGNNCC | 6 cut(s) | 245, 2226, 2324, 2726, 2991, 3212 |
| BspMAI | CTGCAG | 2 cut(s) | 2331, 2446 |
| BspPI | GGATC | 9 cut(s) | 228, 598, 813, 847, 1846, 2477, 2519, 2874, 2909 |
| BspQI | GCTCTTC | 1 cut(s) | 1138 |
| BspT107I | GGYRCC | 2 cut(s) | 2322, 2989 |
| BspTNI | GGTCTC | 4 cut(s) | 100, 468, 487, 2107 |
| BsrDI | GCAATG | 5 cut(s) | 295, 772, 880, 1719, 2088 |
| BsrGI | TGTACA | 1 cut(s) | 2309 |
| BsrI | ACTGG | 5 cut(s) | 505, 1268, 1672, 1923, 2728 |
| BssECI | CCNNGG | 5 cut(s) | 586, 1834, 2164, 2706, 2796 |
| BssNI | GRCGYC | 2 cut(s) | 162, 2323 |
| BssSI | CACGAG | 1 cut(s) | 1023 |
| BssT1I | CCWWGG | 3 cut(s) | 586, 2164, 2706 |
| Bst2BI | CACGAG | 1 cut(s) | 1023 |
| Bst2UI | CCWGG | 5 cut(s) | 302, 479, 1086, 1740, 2797 |
| Bst4CI | ACNGT | 9 cut(s) | 650, 917, 947, 1276, 1446, 1512, 2644, 2724, 2936 |
| Bst6I | CTCTTC | 4 cut(s) | 1138, 2836, 3090, 3114 |
| BstACI | GRCGYC | 2 cut(s) | 162, 2323 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 1428, 1892, 1901 |
| BstAUI | TGTACA | 1 cut(s) | 2309 |
| BstC8I | GCNNGC | 7 cut(s) | 679, 1282, 2327, 2994, 3024, 3036, 3048 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 736, 2330 |
| BstF5I | GGATG | 9 cut(s) | 623, 1174, 1435, 2122, 2501, 2528, 2692, 2971, 3218 |
| BstFNI | CGCG | 2 cut(s) | 97, 282 |
| BstH2I | RGCGCY | 2 cut(s) | 140, 2326 |
| BstHHI | GCGC | 2 cut(s) | 139, 2325 |
| BstMAI | GTCTC | 6 cut(s) | 100, 468, 487, 2107, 2921, 3009 |
| BstMCI | CGRYCG | 3 cut(s) | 186, 241, 277 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 252, 641, 650, 1428, 1892, 1901, 2168, 2322, 2362 |
| BstNI | CCWGG | 5 cut(s) | 302, 479, 1086, 1740, 2797 |
| BstNSI | RCATGY | 2 cut(s) | 2216, 2270 |
| BstSCI | CCNGG | 6 cut(s) | 216, 300, 477, 1084, 1738, 2795 |
| BstSFI | CTRYAG | 2 cut(s) | 2327, 2442 |
| BstUI | CGCG | 2 cut(s) | 97, 282 |
| BstV1I | GCAGC | 8 cut(s) | 242, 922, 943, 2183, 2428, 2450, 2779, 2801 |
| BstV2I | GAAGAC | 6 cut(s) | 168, 651, 924, 1410, 2385, 2725 |
| BstX2I | RGATCY | 3 cut(s) | 590, 818, 2524 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1512 |
| BstYI | RGATCY | 3 cut(s) | 590, 818, 2524 |
| BstZI | CGGCCG | 1 cut(s) | 238 |
| Bsu36I | CCTNAGG | 3 cut(s) | 612, 1383, 2154 |
| BsuI | GTATCC | 1 cut(s) | 1380 |
| BsuRI | GGCC | 8 cut(s) | 226, 240, 644, 1388, 1670, 2316, 2356, 3022 |
| BtgZI | GCGATG | 1 cut(s) | 483 |
| BtrI | CACGTC | 1 cut(s) | 174 |
| BtsCI | GGATG | 9 cut(s) | 623, 1174, 1435, 2122, 2501, 2528, 2692, 2971, 3218 |
| BtsI | GCAGTG | 1 cut(s) | 2016 |
| BtsIMutI | CAGTG | 8 cut(s) | 909, 913, 952, 1314, 1517, 1679, 2016, 2791 |
| Cac8I | GCNNGC | 7 cut(s) | 679, 1282, 2327, 2994, 3024, 3036, 3048 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2441 |
| CciI | TCATGA | 2 cut(s) | 2512, 2656 |
| CfoI | GCGC | 2 cut(s) | 139, 2325 |
| Cfr13I | GGNCC | 5 cut(s) | 642, 1123, 1669, 1805, 2225 |
| CseI | GACGC | 3 cut(s) | 271, 642, 2379 |
| CsiI | ACCWGGT | 1 cut(s) | 477 |
| Csp6I | GTAC | 4 cut(s) | 1658, 1736, 2198, 2310 |
| CviAII | CATG | 9 cut(s) | 26, 1418, 2021, 2213, 2267, 2513, 2625, 2657, 2751 |
| CviQI | GTAC | 4 cut(s) | 1658, 1736, 2198, 2310 |
| DinI | GGCGCC | 1 cut(s) | 2324 |
| DraI | TTTAAA | 1 cut(s) | 2829 |
| DraIII | CACNNNGTG | 1 cut(s) | 2579 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 281 |
| DriI | GACNNNNNGTC | 1 cut(s) | 652 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 281 |
| EaeI | YGGCCR | 1 cut(s) | 238 |
| EagI | CGGCCG | 1 cut(s) | 238 |
| Eam1104I | CTCTTC | 4 cut(s) | 1138, 2836, 3090, 3114 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 652 |
| EarI | CTCTTC | 4 cut(s) | 1138, 2836, 3090, 3114 |
| EciI | GGCGGA | 1 cut(s) | 3122 |
| Ecl136II | GAGCTC | 2 cut(s) | 797, 1131 |
| EclXI | CGGCCG | 1 cut(s) | 238 |
| Eco130I | CCWWGG | 3 cut(s) | 586, 2164, 2706 |
| Eco147I | AGGCCT | 1 cut(s) | 2316 |
| Eco24I | GRGCYC | 3 cut(s) | 248, 799, 1133 |
| Eco31I | GGTCTC | 4 cut(s) | 100, 468, 487, 2107 |
| Eco47I | GGWCC | 3 cut(s) | 1123, 1805, 2225 |
| Eco52I | CGGCCG | 1 cut(s) | 238 |
| Eco53kI | GAGCTC | 2 cut(s) | 797, 1131 |
| Eco57I | CTGAAG | 4 cut(s) | 885, 918, 1931, 2767 |
| Eco81I | CCTNAGG | 3 cut(s) | 612, 1383, 2154 |
| Eco88I | CYCGRG | 2 cut(s) | 103, 2897 |
| EcoICRI | GAGCTC | 2 cut(s) | 797, 1131 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 736, 2330 |
| EcoRII | CCWGG | 5 cut(s) | 300, 477, 1084, 1738, 2795 |
| EcoT14I | CCWWGG | 3 cut(s) | 586, 2164, 2706 |
| EcoT22I | ATGCAT | 2 cut(s) | 2703, 2746 |
| EcoT38I | GRGCYC | 3 cut(s) | 248, 799, 1133 |
| EgeI | GGCGCC | 1 cut(s) | 2324 |
| EheI | GGCGCC | 1 cut(s) | 2324 |
| ErhI | CCWWGG | 3 cut(s) | 586, 2164, 2706 |
| FaeI | CATG | 9 cut(s) | 29, 1421, 2024, 2216, 2270, 2516, 2628, 2660, 2754 |
| FaqI | GGGAC | 5 cut(s) | 149, 1060, 1731, 2238, 2814 |
| FatI | CATG | 9 cut(s) | 25, 1417, 2020, 2212, 2266, 2512, 2624, 2656, 2750 |
| FauI | CCCGC | 3 cut(s) | 257, 2002, 2762 |
| FblI | GTMKAC | 1 cut(s) | 292 |
| FokI | GGATG | 9 cut(s) | 630, 1161, 1422, 2129, 2508, 2515, 2679, 2978, 3205 |
| FriOI | GRGCYC | 3 cut(s) | 248, 799, 1133 |
| FspBI | CTAG | 6 cut(s) | 39, 639, 1257, 2082, 2733, 3128 |
| GlaI | GCGC | 2 cut(s) | 138, 2324 |
| HaeII | RGCGCY | 2 cut(s) | 140, 2326 |
| HaeIII | GGCC | 8 cut(s) | 226, 240, 644, 1388, 1670, 2316, 2356, 3022 |
| HapII | CCGG | 5 cut(s) | 194, 218, 241, 521, 822 |
| HgaI | GACGC | 3 cut(s) | 271, 642, 2379 |
| HhaI | GCGC | 2 cut(s) | 139, 2325 |
| Hin1I | GRCGYC | 2 cut(s) | 162, 2323 |
| Hin1II | CATG | 9 cut(s) | 29, 1421, 2024, 2216, 2270, 2516, 2628, 2660, 2754 |
| Hin6I | GCGC | 2 cut(s) | 137, 2323 |
| HinP1I | GCGC | 2 cut(s) | 137, 2323 |
| HincII | GTYRAC | 3 cut(s) | 293, 897, 1242 |
| HindII | GTYRAC | 3 cut(s) | 293, 897, 1242 |
| HpaII | CCGG | 5 cut(s) | 194, 218, 241, 521, 822 |
| HphI | GGTGA | 4 cut(s) | 461, 986, 1412, 2902 |
| Hpy166II | GTNNAC | 5 cut(s) | 293, 897, 1215, 1242, 2310 |
| Hpy8I | GTNNAC | 5 cut(s) | 293, 897, 1215, 1242, 2310 |
| Hpy99I | CGWCG | 5 cut(s) | 133, 164, 287, 658, 1658 |
| HpyAV | CCTTC | 3 cut(s) | 1023, 2601, 3181 |
| HpyCH4III | ACNGT | 9 cut(s) | 650, 917, 947, 1276, 1446, 1512, 2644, 2724, 2936 |
| HpyCH4IV | ACGT | 8 cut(s) | 162, 173, 745, 1211, 1656, 1801, 2575, 2803 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 252, 641, 650, 1428, 1892, 1901, 2168, 2322, 2362 |
| HpySE526I | ACGT | 8 cut(s) | 162, 173, 745, 1211, 1656, 1801, 2575, 2803 |
| Hsp92I | GRCGYC | 2 cut(s) | 162, 2323 |
| Hsp92II | CATG | 9 cut(s) | 29, 1421, 2024, 2216, 2270, 2516, 2628, 2660, 2754 |
| HspAI | GCGC | 2 cut(s) | 137, 2323 |
| KasI | GGCGCC | 1 cut(s) | 2322 |
| Kpn2I | TCCGGA | 1 cut(s) | 821 |
| LguI | GCTCTTC | 1 cut(s) | 1138 |
| LmnI | GCTCC | 8 cut(s) | 77, 243, 347, 802, 1570, 2168, 3001, 3210 |
| Lsp1109I | GCAGC | 8 cut(s) | 242, 922, 943, 2183, 2428, 2450, 2779, 2801 |
| MabI | ACCWGGT | 1 cut(s) | 477 |
| MaeI | CTAG | 6 cut(s) | 39, 639, 1257, 2082, 2733, 3128 |
| MaeII | ACGT | 8 cut(s) | 162, 173, 745, 1211, 1656, 1801, 2575, 2803 |
| MaeIII | GTNAC | 5 cut(s) | 947, 1220, 1270, 1522, 2772 |
| MfeI | CAATTG | 2 cut(s) | 2298, 2397 |
| MflI | RGATCY | 3 cut(s) | 590, 818, 2524 |
| MhlI | GDGCHC | 5 cut(s) | 248, 799, 1133, 1567, 2957 |
| Mly113I | GGCGCC | 1 cut(s) | 2323 |
| MlyI | GAGTC | 7 cut(s) | 23, 66, 298, 385, 1592, 2363, 2486 |
| MmeI | TCCRAC | 5 cut(s) | 359, 1283, 2101, 2480, 2573 |
| Mph1103I | ATGCAT | 2 cut(s) | 2703, 2746 |
| MroI | TCCGGA | 1 cut(s) | 821 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1747, 3123 |
| MseI | TTAA | 3 cut(s) | 45, 1973, 2828 |
| MslI | CAYNNNNRTG | 2 cut(s) | 2021, 2749 |
| MspA1I | CMGCKG | 3 cut(s) | 255, 2441, 2792 |
| MspI | CCGG | 5 cut(s) | 194, 218, 241, 521, 822 |
| MspR9I | CCNGG | 6 cut(s) | 218, 302, 479, 1086, 1740, 2797 |
| MunI | CAATTG | 2 cut(s) | 2298, 2397 |
| Mva1269I | GAATGC | 4 cut(s) | 1522, 2016, 2509, 2575 |
| MvaI | CCWGG | 5 cut(s) | 302, 479, 1086, 1740, 2797 |
| MvnI | CGCG | 2 cut(s) | 97, 282 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 252, 641, 650, 1428, 1892, 1901, 2168, 2322, 2362 |
| NarI | GGCGCC | 1 cut(s) | 2323 |
| NciI | CCSGG | 1 cut(s) | 218 |
| NlaIII | CATG | 9 cut(s) | 29, 1421, 2024, 2216, 2270, 2516, 2628, 2660, 2754 |
| NlaIV | GGNNCC | 6 cut(s) | 245, 2226, 2324, 2726, 2991, 3212 |
| NmeAIII | GCCGAG | 1 cut(s) | 93 |
| NmuCI | GTSAC | 3 cut(s) | 947, 1220, 2772 |
| NsiI | ATGCAT | 2 cut(s) | 2703, 2746 |
| NspI | RCATGY | 2 cut(s) | 2216, 2270 |
| PagI | TCATGA | 2 cut(s) | 2512, 2656 |
| PceI | AGGCCT | 1 cut(s) | 2316 |
| PciI | ACATGT | 2 cut(s) | 2212, 2266 |
| PciSI | GCTCTTC | 1 cut(s) | 1138 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 179, 270, 709 |
| PctI | GAATGC | 4 cut(s) | 1522, 2016, 2509, 2575 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1747, 3123 |
| PflFI | GACNNNGTC | 1 cut(s) | 479 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1539 |
| PleI | GAGTC | 7 cut(s) | 23, 65, 297, 384, 1592, 2363, 2485 |
| PluTI | GGCGCC | 1 cut(s) | 2326 |
| PpsI | GAGTC | 7 cut(s) | 23, 65, 297, 384, 1592, 2363, 2485 |
| PscI | ACATGT | 2 cut(s) | 2212, 2266 |
| Psp124BI | GAGCTC | 2 cut(s) | 799, 1133 |
| Psp1406I | AACGTT | 1 cut(s) | 1211 |
| Psp6I | CCWGG | 5 cut(s) | 300, 477, 1084, 1738, 2795 |
| PspGI | CCWGG | 5 cut(s) | 300, 477, 1084, 1738, 2795 |
| PspN4I | GGNNCC | 6 cut(s) | 245, 2226, 2324, 2726, 2991, 3212 |
| PspPI | GGNCC | 5 cut(s) | 642, 1123, 1669, 1805, 2225 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 1361, 1393, 2046, 2078 |
| PstI | CTGCAG | 2 cut(s) | 2331, 2446 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2441 |
| PsuI | RGATCY | 3 cut(s) | 590, 818, 2524 |
| PsyI | GACNNNGTC | 1 cut(s) | 479 |
| PvuII | CAGCTG | 2 cut(s) | 2441, 2792 |
| RsaI | GTAC | 4 cut(s) | 1659, 1737, 2199, 2311 |
| RsaNI | GTAC | 4 cut(s) | 1658, 1736, 2198, 2310 |
| RseI | CAYNNNNRTG | 2 cut(s) | 2021, 2749 |
| SacI | GAGCTC | 2 cut(s) | 799, 1133 |
| SalI | GTCGAC | 1 cut(s) | 291 |
| SapI | GCTCTTC | 1 cut(s) | 1138 |
| SaqAI | TTAA | 3 cut(s) | 45, 1973, 2828 |
| Sau96I | GGNCC | 5 cut(s) | 642, 1123, 1669, 1805, 2225 |
| SbfI | CCTGCAGG | 1 cut(s) | 2331 |
| SchI | GAGTC | 7 cut(s) | 23, 66, 298, 385, 1592, 2363, 2486 |
| ScrFI | CCNGG | 6 cut(s) | 218, 302, 479, 1086, 1740, 2797 |
| SdaI | CCTGCAGG | 1 cut(s) | 2331 |
| SduI | GDGCHC | 5 cut(s) | 248, 799, 1133, 1567, 2957 |
| SexAI | ACCWGGT | 1 cut(s) | 477 |
| SfcI | CTRYAG | 2 cut(s) | 2327, 2442 |
| SfoI | GGCGCC | 1 cut(s) | 2324 |
| SinI | GGWCC | 3 cut(s) | 1123, 1805, 2225 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 2021, 2749 |
| SmlI | CTYRAG | 1 cut(s) | 688 |
| SmoI | CTYRAG | 1 cut(s) | 688 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 2331 |
| SseBI | AGGCCT | 1 cut(s) | 2316 |
| SspDI | GGCGCC | 1 cut(s) | 2322 |
| SspI | AATATT | 2 cut(s) | 1200, 1471 |
| SspMI | CTAG | 6 cut(s) | 39, 639, 1257, 2082, 2733, 3128 |
| SstI | GAGCTC | 2 cut(s) | 799, 1133 |
| StuI | AGGCCT | 1 cut(s) | 2316 |
| StyD4I | CCNGG | 6 cut(s) | 216, 300, 477, 1084, 1738, 2795 |
| StyI | CCWWGG | 3 cut(s) | 586, 2164, 2706 |
| TaaI | ACNGT | 9 cut(s) | 650, 917, 947, 1276, 1446, 1512, 2644, 2724, 2936 |
| TaiI | ACGT | 8 cut(s) | 165, 176, 748, 1214, 1659, 1804, 2578, 2806 |
| TaqI | TCGA | 5 cut(s) | 144, 159, 292, 359, 793 |
| TaqII | GACCGA | 2 cut(s) | 200, 1667 |
| TatI | WGTACW | 1 cut(s) | 2309 |
| TauI | GCSGC | 5 cut(s) | 97, 137, 255, 282, 2297 |
| Tru1I | TTAA | 3 cut(s) | 45, 1973, 2828 |
| Tru9I | TTAA | 3 cut(s) | 45, 1973, 2828 |
| TscAI | CASTG | 8 cut(s) | 909, 920, 952, 1321, 1517, 1679, 2016, 2791 |
| TseFI | GTSAC | 3 cut(s) | 947, 1220, 2772 |
| TseI | GCWGC | 8 cut(s) | 255, 910, 956, 2171, 2438, 2441, 2789, 2792 |
| Tsp45I | GTSAC | 3 cut(s) | 947, 1220, 2772 |
| TspGWI | ACGGA | 1 cut(s) | 3170 |
| TspRI | CASTG | 8 cut(s) | 909, 920, 952, 1321, 1517, 1679, 2016, 2791 |
| Tth111I | GACNNNGTC | 1 cut(s) | 479 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1539 |
| VpaK11BI | GGWCC | 3 cut(s) | 1123, 1805, 2225 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 736, 2330 |
| XapI | RAATTY | 8 cut(s) | 705, 1039, 1346, 1495, 1829, 2231, 2417, 2429 |
| XbaI | TCTAGA | 1 cut(s) | 3127 |
| XceI | RCATGY | 2 cut(s) | 2216, 2270 |
| XmiI | GTMKAC | 1 cut(s) | 292 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1747, 3123 |
| XspI | CTAG | 6 cut(s) | 39, 639, 1257, 2082, 2733, 3128 |
| ZraI | GACGTC | 1 cut(s) | 163 |
| Zsp2I | ATGCAT | 2 cut(s) | 2703, 2746 |