Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0006613

Physical Location & Seq

Genomic Coordinates Reverse (-)

5715085 .. 5722415

Gene Structure 7331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g10030.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2709 bp

ATGTATGTATCAAATAACTCCCAGGGATCTGTAATTGTATCAAATCCTAAGGGATGTAAAAGGATTTTTGCTTCTAGAGCCCACGTCGATTCGTCTTCCCTCATTACAAGAGCAAGCTTTCTCTTGAGTGAGTGCAGAAGGATTTTGCGTAGCGAGGACCCTATAGCTTACATTAGGACACACTGTAGATATACTTTTGGCAATGGATTGATTATGGATAATGTGATTCGAGCTTCGAGTTGTGATATTGGTAGATCCGGAGTAAAGAGGAAAGGATCAACGCTTTGTGAAACCTCACAGATACCTTGCAATGTGAAGAGTAAAGTGCAGTCAACTTCAGTGATGCATCCATGTGAAAGAGTAGTTGCTTTAGAATTGAACAGTGACTTGGATGTTCTTTGTGTGCAAGGTGATGTGTTAGATCCGCAAGACAATGAACTCCAAGTTCCTTCTGACACTCGTGTCGCTGATGGAAATCTTGGGACTTCATCTTTCAATTTGAAGAGTATGGATAATGTTGCTTGTGTTGGTGATGCTGTTAACCATAAAACTTGCAGCAAGAGTGTTGGTCTACAACCTGGCAAGAACTTCTACCTGAATCGCCTTGCTTTTGAGGACCATAGCTCTTCAGGTCATGATTCTGTTATTTCCTTGCCAGAGCTTCTTCATCCTATTCAAAGTTTATCACAAATATTTATTGCAACATTCACAAGTGACATTTTATGGTTTTTGTCAACCTGTGAGATTCCCAGCCATCTGCCAGTAACAGTTGCTTGCCATAGTACAGAGAGATGTTGGAGTTCAAGCACTGAAAGTAGAACATCTGCGCCTTACCCAGAATTTCCAAACTTAATCGTAGTGTATCCCCCATTCCCTGAGGCCATAGCTTTTGGTGAAGACCTGAAAAGACATGGCATTGGTTGCCATCATCCAAAATTGTTTGTTTTACAGAGAGATGATAGTATTCGTGTTATCATTACCTCTGCCAATTTAGTGCCAACACAGTGGAATGCGGTAACCAATACCGTCTGGTGGCAAGATTTCCCTCGCAGAAGTGCTCCTGATTATTCATCACTTTTTACTCAATTTCCCGGCAGGGAAGTAAATCAAGACTCAAAATCGGATTTTGCTTCATATCTGGCTGGATTTCTAGCAACTCTACTGACCGATGTACCAAGTCAGGCCCAGTGGATTGTTGAGTTGGCAAAGTATGATTTTGGAGGAGCAATGGGACATTTGGTTGCTTCTATACCTGGAATCCATTCATATAAAACTCCCTATATAATAGAATCCAGAAACTCTGTGTGTGCTGATCGCGGTCCATCAGGGTCATCTGGTATGAAATTCCTTGGATCAGTTGAAACATCTGTGGTCGGCCTAAGCTACCTCTTTCACAATGCAACAGATGCAAATGGTGCAAAGCTGAAGAAACTGGCTTCATTTCTCAGGAAATCTTGTGAAGCAAAAGATTTATCAATTGTCTTAACAAGAAACACAAATATACCTGCTGATGCAAATGCAGTGAGCATTCATGTGTCAAATCCTAACAAGTTCTCTGAGAGAGATTGCGTTCAACTTGGGTTTTTGCCTAAAAACATTGCAAAATGGATCTCTCCACTCTGGGATATTGGGTTTTTTAGATTCTCAGGTTACGTATGTCCTAAAGAAGCCGTTGGAGCAGCTCTAGGAGGAAACAACAAGAAAGTATGGCTGAGACTGCATGTGTTACAGGGACCACAGTTTCAGGATATATCAAAGATGATGCAACCTCAACATGTTATTGCATTATGCTCTTTGGTTGCAGCAATTGAAAGGTGTACAGGCCTCTGGCGCTTGCAGGAGGTTTTAGGTCAATATAAATGGCCTGAATCGCTTGAGTCTGAGTTTGTTTATGGTGCATCTTCAATTGGGTCAATCAATGCAAAATTTTTAGCCGAATTTTCAGCAGCTGCAGGAAAGAAATCATTTCAGTTTGATTCTGAGGAGTCTGATCCAGAGGATCCATCCATTAGAATCATTTTTCCAACCATCGAAAGAGTGAAGAATGCACGTAGTGGAATTTTTCCTTCAAAACGTGTTCTTTGCTTCTCTGAGAAAACATGGCAAAGGCTGAGGACAGTAGATATACTTCATGATGCAATTCCTCATCCCTATGATAGAGTGGGATATCCAATGCATACCAAGGTGGCCCGAAGACGGTTCCAGTCTAGGACAGATGCATCTTCATGTGGTTGGGTTTACTGCGGGTCACATAACTTCAGTGCAGCTGCCTGGGGACGTTCAATTTCCACTCCATCTAGTTTAAAAACAAATGGAATAGGGAATGTCAATTCATCTCCGGATCATATGCTACATATTTGCAATTATGAACTCGGGATCATTTTCACCTTTCCCCAAACAGAGACAGACAGTAATGCCAATCAAAATAGCACAAACTTGGATGATGTTGTTTTGCCATTTGTGGTGCCTGCTCCAAAATACAAGCGAGGAGACAGGCCAGCAACGAGGCTGGCTATGTGGCAGGCATTAGCTGAACTTACTGAAAAAGAGAGAGAAAAACATAGAGAGGAAGAGATTCAGGCAGAAGTTATGGAAGAGATTCCAGATGAAGATGAAGATGTCGAGGCAACTGATTTTGTTGTTGAAGAGAAGGAAGATGAGAAGGCTTACGCTGAGATTCTTTGGAGCCAATCATCTGAGAGCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA HIRAN Tyr-DNA_phospho

Protein Analysis

903

Amino Acids

100.12

Weight (kDa)

6.17

Isoelectric Point (pI)

52.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tyr-DNA_phospho	PF06087	206 - 424	1.2e-23	Tyrosyl-DNA phosphodiesterase
HIRAN	PF08797	451 - 556	1.1e-09	HIRAN domain
Tyr-DNA_phospho	PF06087	606 - 828	5.7e-24	Tyrosyl-DNA phosphodiesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07400 AT5G07400 AT5G07400 AT5G07400 AT5G07400 AT5G07400 AT5G07400 AT5G07400
fragaria_vesca	FvH4_5g10030
malus_domestica	MD06G1128300.v1.1 MD09G1063600.v1.1
prunus_persica	Prupe.5G138100_v2.0.a1
pyrus_communis	pycom06g11850
rosa_chinensis	RchiOBHm_Chr7g0188231
rosa_laevigata	RLG00000002473 RLG00000004716
rosa_multiflora	Rmu_sc0008750.1_g000014
rosa_roxburghii	Rroxscaffold_3G00266590
rosa_rugosa	Rorug06G0489000 Rorug06G0489300
rosa_samantha	Rh7AG093600 Rh7BG095000 Rh7CG095400 Rh7DG095500 Rh7DG095600
rosa_wichuraiana	Rw7G008060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	461
Acc36I	ACCTGC	1 cut(s)	1513
AccB1I	GGYRCC	1 cut(s)	2464
AccI	GTMKAC	1 cut(s)	571
AccII	CGCG	1 cut(s)	1317
AccIII	TCCGGA	2 cut(s)	257, 2338
AciI	CCGC	4 cut(s)	425, 1013, 1317, 2244
AcsI	RAATTY	5 cut(s)	839, 1343, 1925, 1937, 2058
AcuI	CTGAAG	4 cut(s)	321, 612, 1445, 2242
AdeI	CACNNNGTG	1 cut(s)	2054
AfaI	GTAC	3 cut(s)	784, 1173, 1819
AfiI	CCNNNNNNNGG	2 cut(s)	1032, 2196
AflIII	ACRYGT	2 cut(s)	1774, 2074
AjiI	CACGTC	1 cut(s)	85
AjnI	CCWGG	4 cut(s)	21, 577, 1252, 2270
AjuI	GAANNNNNNNTTGG	2 cut(s)	371, 403
Alw21I	GWGCWC	1 cut(s)	1060
Alw26I	GTCTC	3 cut(s)	1708, 2396, 2484
AlwNI	CAGNNNCTG	1 cut(s)	1949
Ama87I	CYCGRG	1 cut(s)	2372
Aor13HI	TCCGGA	2 cut(s)	257, 2338
AoxI	GGCC	7 cut(s)	879, 1182, 1375, 1822, 1862, 2187, 2495
ApeKI	GCWGC	7 cut(s)	555, 1679, 1802, 1946, 1949, 2264, 2267
ApoI	RAATTY	5 cut(s)	839, 1343, 1925, 1937, 2058
Asp700I	GAANNNNTTC	3 cut(s)	1261, 2574, 2598
AspLEI	GCGC	2 cut(s)	829, 1833
AspS9I	GGNCC	6 cut(s)	157, 616, 1183, 1319, 1733, 2188
AsuC2I	CCSGG	1 cut(s)	1092
AsuHPI	GGTGA	4 cut(s)	422, 542, 905, 2377
AvaI	CYCGRG	1 cut(s)	2372
AvaII	GGWCC	4 cut(s)	157, 616, 1319, 1733
AxyI	CCTNAGG	2 cut(s)	48, 876
BaeI	ACNNNNGTAYC	2 cut(s)	1155, 1188
BamHI	GGATCC	1 cut(s)	1999
BanI	GGYRCC	1 cut(s)	2464
BanII	GRGCYC	1 cut(s)	82
BarI	GAAGNNNNNNTAC	2 cut(s)	2112, 2144
BauI	CACGAG	1 cut(s)	459
BbsI	GAAGAC	3 cut(s)	87, 903, 2200
Bbv12I	GWGCWC	1 cut(s)	1060
BbvCI	CCTCAGC	1 cut(s)	2111
BbvI	GCAGC	7 cut(s)	567, 1691, 1814, 1936, 1958, 2254, 2276
BccI	CCATC	7 cut(s)	464, 762, 933, 1330, 2011, 2036, 2302
BceAI	ACGGC	1 cut(s)	1655
BciT130I	CCWGG	4 cut(s)	23, 579, 1254, 2272
BciVI	GTATCC	1 cut(s)	873
BcnI	CCSGG	1 cut(s)	1092
BcoDI	GTCTC	3 cut(s)	1708, 2396, 2484
BfaI	CTAG	5 cut(s)	75, 1151, 1685, 2208, 2298
BfmI	CTRYAG	3 cut(s)	162, 184, 1950
BfoI	RGCGCY	1 cut(s)	1834
BfuAI	ACCTGC	1 cut(s)	1513
BfuI	GTATCC	1 cut(s)	873
BisI	GCNGC	7 cut(s)	556, 1680, 1803, 1947, 1950, 2265, 2268
BlsI	GCNGC	7 cut(s)	557, 1681, 1804, 1948, 1951, 2266, 2269
Bme1390I	CCNGG	5 cut(s)	23, 579, 1092, 1254, 2272
Bme18I	GGWCC	4 cut(s)	157, 616, 1319, 1733
BmeT110I	CYCGRG	1 cut(s)	2372
BmgBI	CACGTC	1 cut(s)	85
BmgT120I	GGNCC	6 cut(s)	157, 616, 1183, 1319, 1733, 2188
BmiI	GGNNCC	6 cut(s)	159, 1734, 2001, 2201, 2466, 2687
BmrFI	CCNGG	5 cut(s)	23, 579, 1092, 1254, 2272
BmrI	ACTGGG	1 cut(s)	1180
BmuI	ACTGGG	1 cut(s)	1180
BpiI	GAAGAC	3 cut(s)	87, 903, 2200
Bpu10I	CCTNAGC	2 cut(s)	1379, 2111
BpuEI	CTTGAG	2 cut(s)	145, 1895
BpuMI	CCSGG	1 cut(s)	1092
BsaAI	YACGTR	2 cut(s)	1654, 2051
BsaBI	GATNNNNATC	1 cut(s)	474
BsaJI	CCNNGG	5 cut(s)	21, 22, 1348, 2181, 2271
BsaWI	WCCGGW	2 cut(s)	257, 2338
Bsc4I	CCNNNNNNNGG	2 cut(s)	1032, 2196
Bse1I	ACTGG	4 cut(s)	761, 1186, 1437, 2203
Bse21I	CCTNAGG	2 cut(s)	48, 876
Bse3DI	GCAATG	4 cut(s)	208, 316, 1233, 1596
Bse8I	GATNNNNATC	1 cut(s)	474
BseAI	TCCGGA	2 cut(s)	257, 2338
BseBI	CCWGG	4 cut(s)	23, 579, 1254, 2272
BseDI	CCNNGG	5 cut(s)	21, 22, 1348, 2181, 2271
BseGI	GGATG	8 cut(s)	59, 346, 397, 667, 928, 2003, 2146, 2446
BseJI	GATNNNNATC	1 cut(s)	474
BseLI	CCNNNNNNNGG	2 cut(s)	1032, 2196
BseMI	GCAATG	4 cut(s)	208, 316, 1233, 1596
BseNI	ACTGG	4 cut(s)	761, 1186, 1437, 2203
BseRI	GAGGAG	3 cut(s)	1236, 1997, 2502
BseXI	GCAGC	7 cut(s)	567, 1691, 1814, 1936, 1958, 2254, 2276
BseYI	CCCAGC	1 cut(s)	749
BsgI	GTGCAG	3 cut(s)	154, 347, 2283
Bsh1236I	CGCG	1 cut(s)	1317
BshFI	GGCC	7 cut(s)	881, 1184, 1377, 1824, 1864, 2189, 2497
BshNI	GGYRCC	1 cut(s)	2464
BsiHKAI	GWGCWC	1 cut(s)	1060
BsiHKCI	CYCGRG	1 cut(s)	2372
BsiSI	CCGG	3 cut(s)	258, 1092, 2339
BslFI	GGGAC	4 cut(s)	496, 1245, 1746, 2289
BslI	CCNNNNNNNGG	2 cut(s)	1032, 2196
BsmAI	GTCTC	3 cut(s)	1708, 2396, 2484
BsmFI	GGGAC	4 cut(s)	496, 1245, 1746, 2289
BsmI	GAATGC	3 cut(s)	1015, 1527, 2050
BsnI	GGCC	7 cut(s)	881, 1184, 1377, 1824, 1864, 2189, 2497
BsoBI	CYCGRG	1 cut(s)	2372
Bsp1286I	GDGCHC	2 cut(s)	82, 1060
Bsp13I	TCCGGA	2 cut(s)	257, 2338
Bsp1407I	TGTACA	1 cut(s)	1817
BspACI	CCGC	4 cut(s)	425, 1013, 1317, 2244
BspANI	GGCC	7 cut(s)	881, 1184, 1377, 1824, 1864, 2189, 2497
BspEI	TCCGGA	2 cut(s)	257, 2338
BspFNI	CGCG	1 cut(s)	1317
BspHI	TCATGA	2 cut(s)	634, 2131
BspLI	GGNNCC	6 cut(s)	159, 1734, 2001, 2201, 2466, 2687
BspMAI	CTGCAG	1 cut(s)	1954
BspMI	ACCTGC	1 cut(s)	1513
BspQI	GCTCTTC	1 cut(s)	631
BspT107I	GGYRCC	1 cut(s)	2464
BsrDI	GCAATG	4 cut(s)	208, 316, 1233, 1596
BsrGI	TGTACA	1 cut(s)	1817
BsrI	ACTGG	4 cut(s)	761, 1186, 1437, 2203
BssECI	CCNNGG	5 cut(s)	21, 22, 1348, 2181, 2271
BssSI	CACGAG	1 cut(s)	459
BssT1I	CCWWGG	2 cut(s)	1348, 2181
Bst2BI	CACGAG	1 cut(s)	459
Bst2UI	CCWGG	4 cut(s)	23, 579, 1254, 2272
Bst4CI	ACNGT	9 cut(s)	185, 383, 769, 1005, 1027, 1740, 2119, 2199, 2411
Bst6I	CTCTTC	6 cut(s)	311, 497, 631, 2565, 2589, 2640
BstAPI	GCANNNNNTGC	3 cut(s)	921, 1406, 1415
BstAUI	TGTACA	1 cut(s)	1817
BstBAI	YACGTR	2 cut(s)	1654, 2051
BstC8I	GCNNGC	7 cut(s)	115, 775, 1835, 2469, 2499, 2511, 2523
BstEII	GGTNACC	1 cut(s)	1015
BstF5I	GGATG	8 cut(s)	59, 346, 397, 667, 928, 2003, 2146, 2446
BstFNI	CGCG	1 cut(s)	1317
BstH2I	RGCGCY	1 cut(s)	1834
BstHHI	GCGC	2 cut(s)	829, 1833
BstMAI	GTCTC	3 cut(s)	1708, 2396, 2484
BstMWI	GCNNNNNNNGC	8 cut(s)	77, 921, 1406, 1415, 1676, 1717, 1830, 1870
BstNI	CCWGG	4 cut(s)	23, 579, 1254, 2272
BstNSI	RCATGY	2 cut(s)	1724, 1778
BstPI	GGTNACC	1 cut(s)	1015
BstSCI	CCNGG	5 cut(s)	21, 577, 1090, 1252, 2270
BstSFI	CTRYAG	3 cut(s)	162, 184, 1950
BstSNI	TACGTA	1 cut(s)	1654
BstUI	CGCG	1 cut(s)	1317
BstV1I	GCAGC	7 cut(s)	567, 1691, 1814, 1936, 1958, 2254, 2276
BstV2I	GAAGAC	3 cut(s)	87, 903, 2200
BstX2I	RGATCY	5 cut(s)	26, 254, 421, 1608, 1999
BstXI	CCANNNNNNTGG	1 cut(s)	1005
BstYI	RGATCY	5 cut(s)	26, 254, 421, 1608, 1999
Bsu36I	CCTNAGG	2 cut(s)	48, 876
BsuI	GTATCC	1 cut(s)	873
BsuRI	GGCC	7 cut(s)	881, 1184, 1377, 1824, 1864, 2189, 2497
BtrI	CACGTC	1 cut(s)	85
BtsCI	GGATG	8 cut(s)	59, 346, 397, 667, 928, 2003, 2146, 2446
BtsI	GCAGTG	1 cut(s)	1527
BtsIMutI	CAGTG	8 cut(s)	181, 345, 388, 807, 1010, 1193, 1527, 2266
BveI	ACCTGC	1 cut(s)	1513
Cac8I	GCNNGC	7 cut(s)	115, 775, 1835, 2469, 2499, 2511, 2523
CaiI	CAGNNNCTG	1 cut(s)	1949
CciI	TCATGA	2 cut(s)	634, 2131
CfoI	GCGC	2 cut(s)	829, 1833
Cfr13I	GGNCC	6 cut(s)	157, 616, 1183, 1319, 1733, 2188
Csp6I	GTAC	3 cut(s)	783, 1172, 1818
CviAII	CATG	9 cut(s)	351, 635, 911, 1532, 1721, 1775, 2100, 2132, 2226
CviQI	GTAC	3 cut(s)	783, 1172, 1818
DraI	TTTAAA	1 cut(s)	2304
DraIII	CACNNNGTG	1 cut(s)	2054
DrdI	GACNNNNNNGTC	1 cut(s)	461
DseDI	GACNNNNNNGTC	1 cut(s)	461
Eam1104I	CTCTTC	6 cut(s)	311, 497, 631, 2565, 2589, 2640
EarI	CTCTTC	6 cut(s)	311, 497, 631, 2565, 2589, 2640
Eco105I	TACGTA	1 cut(s)	1654
Eco130I	CCWWGG	2 cut(s)	1348, 2181
Eco147I	AGGCCT	1 cut(s)	1824
Eco24I	GRGCYC	1 cut(s)	82
Eco32I	GATATC	1 cut(s)	2168
Eco47I	GGWCC	4 cut(s)	157, 616, 1319, 1733
Eco57I	CTGAAG	4 cut(s)	321, 612, 1445, 2242
Eco81I	CCTNAGG	2 cut(s)	48, 876
Eco88I	CYCGRG	1 cut(s)	2372
Eco91I	GGTNACC	1 cut(s)	1015
EcoO109I	RGGNCCY	1 cut(s)	157
EcoO65I	GGTNACC	1 cut(s)	1015
EcoRII	CCWGG	4 cut(s)	21, 577, 1252, 2270
EcoRV	GATATC	1 cut(s)	2168
EcoT14I	CCWWGG	2 cut(s)	1348, 2181
EcoT22I	ATGCAT	3 cut(s)	348, 2178, 2221
EcoT38I	GRGCYC	1 cut(s)	82
ErhI	CCWWGG	2 cut(s)	1348, 2181
FaeI	CATG	9 cut(s)	354, 638, 914, 1535, 1724, 1778, 2103, 2135, 2229
FaqI	GGGAC	4 cut(s)	496, 1245, 1746, 2289
FatI	CATG	9 cut(s)	350, 634, 910, 1531, 1720, 1774, 2099, 2131, 2225
FauI	CCCGC	1 cut(s)	2237
FauNDI	CATATG	1 cut(s)	2346
FblI	GTMKAC	1 cut(s)	571
Fnu4HI	GCNGC	7 cut(s)	556, 1680, 1803, 1947, 1950, 2265, 2268
FokI	GGATG	8 cut(s)	66, 333, 404, 654, 915, 1990, 2133, 2453
FriOI	GRGCYC	1 cut(s)	82
Fsp4HI	GCNGC	7 cut(s)	556, 1680, 1803, 1947, 1950, 2265, 2268
FspBI	CTAG	5 cut(s)	75, 1151, 1685, 2208, 2298
GlaI	GCGC	2 cut(s)	828, 1832
GluI	GCNGC	7 cut(s)	556, 1680, 1803, 1947, 1950, 2265, 2268
GsaI	CCCAGC	1 cut(s)	753
HaeII	RGCGCY	1 cut(s)	1834
HaeIII	GGCC	7 cut(s)	881, 1184, 1377, 1824, 1864, 2189, 2497
HapII	CCGG	3 cut(s)	258, 1092, 2339
HhaI	GCGC	2 cut(s)	829, 1833
Hin1II	CATG	9 cut(s)	354, 638, 914, 1535, 1724, 1778, 2103, 2135, 2229
Hin6I	GCGC	2 cut(s)	827, 1831
HinP1I	GCGC	2 cut(s)	827, 1831
HincII	GTYRAC	3 cut(s)	333, 541, 735
HindII	GTYRAC	3 cut(s)	333, 541, 735
HindIII	AAGCTT	1 cut(s)	115
HpaI	GTTAAC	1 cut(s)	541
HpaII	CCGG	3 cut(s)	258, 1092, 2339
HphI	GGTGA	4 cut(s)	422, 542, 905, 2377
Hpy166II	GTNNAC	6 cut(s)	333, 541, 572, 735, 1818, 2239
Hpy188I	TCNGA	8 cut(s)	454, 1123, 1558, 1882, 1981, 1990, 2092, 2698
Hpy8I	GTNNAC	6 cut(s)	333, 541, 572, 735, 1818, 2239
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	5 cut(s)	132, 459, 2076, 2644, 2656
HpyCH4III	ACNGT	9 cut(s)	185, 383, 769, 1005, 1027, 1740, 2119, 2199, 2411
HpyCH4IV	ACGT	5 cut(s)	84, 1653, 2050, 2074, 2278
HpyF10VI	GCNNNNNNNGC	8 cut(s)	77, 921, 1406, 1415, 1676, 1717, 1830, 1870
HpySE526I	ACGT	5 cut(s)	84, 1653, 2050, 2074, 2278
Hsp92II	CATG	9 cut(s)	354, 638, 914, 1535, 1724, 1778, 2103, 2135, 2229
HspAI	GCGC	2 cut(s)	827, 1831
Kpn2I	TCCGGA	2 cut(s)	257, 2338
KspAI	GTTAAC	1 cut(s)	541
LguI	GCTCTTC	1 cut(s)	631
LmnI	GCTCC	5 cut(s)	1063, 1223, 1676, 2476, 2685
Lsp1109I	GCAGC	7 cut(s)	567, 1691, 1814, 1936, 1958, 2254, 2276
MaeI	CTAG	5 cut(s)	75, 1151, 1685, 2208, 2298
MaeII	ACGT	5 cut(s)	84, 1653, 2050, 2074, 2278
MaeIII	GTNAC	7 cut(s)	383, 713, 763, 1015, 1649, 1725, 2247
MfeI	CAATTG	3 cut(s)	1476, 1806, 1905
MflI	RGATCY	5 cut(s)	26, 254, 421, 1608, 1999
MhlI	GDGCHC	2 cut(s)	82, 1060
MlyI	GAGTC	3 cut(s)	1106, 1886, 1994
MmeI	TCCRAC	3 cut(s)	776, 1654, 2048
Mph1103I	ATGCAT	3 cut(s)	348, 2178, 2221
MroI	TCCGGA	2 cut(s)	257, 2338
MroXI	GAANNNNTTC	3 cut(s)	1261, 2574, 2598
MseI	TTAA	4 cut(s)	540, 851, 1484, 2303
MslI	CAYNNNNRTG	4 cut(s)	351, 1532, 2151, 2224
MspA1I	CMGCKG	2 cut(s)	1949, 2267
MspI	CCGG	3 cut(s)	258, 1092, 2339
MspR9I	CCNGG	5 cut(s)	23, 579, 1092, 1254, 2272
MunI	CAATTG	3 cut(s)	1476, 1806, 1905
Mva1269I	GAATGC	3 cut(s)	1015, 1527, 2050
MvaI	CCWGG	4 cut(s)	23, 579, 1254, 2272
MvnI	CGCG	1 cut(s)	1317
MwoI	GCNNNNNNNGC	8 cut(s)	77, 921, 1406, 1415, 1676, 1717, 1830, 1870
NciI	CCSGG	1 cut(s)	1092
NdeI	CATATG	1 cut(s)	2346
NlaIII	CATG	9 cut(s)	354, 638, 914, 1535, 1724, 1778, 2103, 2135, 2229
NlaIV	GGNNCC	6 cut(s)	159, 1734, 2001, 2201, 2466, 2687
NmuCI	GTSAC	3 cut(s)	383, 713, 2247
NsiI	ATGCAT	3 cut(s)	348, 2178, 2221
NspI	RCATGY	2 cut(s)	1724, 1778
PagI	TCATGA	2 cut(s)	634, 2131
PasI	CCCWGGG	1 cut(s)	22
PceI	AGGCCT	1 cut(s)	1824
PciI	ACATGT	1 cut(s)	1774
PciSI	GCTCTTC	1 cut(s)	631
PctI	GAATGC	3 cut(s)	1015, 1527, 2050
PdmI	GAANNNNTTC	3 cut(s)	1261, 2574, 2598
PkrI	GCNGC	7 cut(s)	557, 1681, 1804, 1948, 1951, 2266, 2269
PleI	GAGTC	3 cut(s)	1106, 1885, 1993
PpsI	GAGTC	3 cut(s)	1106, 1885, 1993
Ppu21I	YACGTR	2 cut(s)	1654, 2051
PpuMI	RGGWCCY	1 cut(s)	157
PscI	ACATGT	1 cut(s)	1774
Psp5II	RGGWCCY	1 cut(s)	157
Psp6I	CCWGG	4 cut(s)	21, 577, 1252, 2270
PspEI	GGTNACC	1 cut(s)	1015
PspFI	CCCAGC	1 cut(s)	749
PspGI	CCWGG	4 cut(s)	21, 577, 1252, 2270
PspN4I	GGNNCC	6 cut(s)	159, 1734, 2001, 2201, 2466, 2687
PspPI	GGNCC	6 cut(s)	157, 616, 1183, 1319, 1733, 2188
PspPPI	RGGWCCY	1 cut(s)	157
PstI	CTGCAG	1 cut(s)	1954
PstNI	CAGNNNCTG	1 cut(s)	1949
PsuI	RGATCY	5 cut(s)	26, 254, 421, 1608, 1999
PvuII	CAGCTG	2 cut(s)	1949, 2267
RsaI	GTAC	3 cut(s)	784, 1173, 1819
RsaNI	GTAC	3 cut(s)	783, 1172, 1818
RseI	CAYNNNNRTG	4 cut(s)	351, 1532, 2151, 2224
SapI	GCTCTTC	1 cut(s)	631
SaqAI	TTAA	4 cut(s)	540, 851, 1484, 2303
SatI	GCNGC	7 cut(s)	556, 1680, 1803, 1947, 1950, 2265, 2268
Sau96I	GGNCC	6 cut(s)	157, 616, 1183, 1319, 1733, 2188
SchI	GAGTC	3 cut(s)	1106, 1886, 1994
ScrFI	CCNGG	5 cut(s)	23, 579, 1092, 1254, 2272
SduI	GDGCHC	2 cut(s)	82, 1060
SfcI	CTRYAG	3 cut(s)	162, 184, 1950
SinI	GGWCC	4 cut(s)	157, 616, 1319, 1733
SmiMI	CAYNNNNRTG	4 cut(s)	351, 1532, 2151, 2224
SmlI	CTYRAG	2 cut(s)	124, 1874
SmoI	CTYRAG	2 cut(s)	124, 1874
SnaBI	TACGTA	1 cut(s)	1654
SseBI	AGGCCT	1 cut(s)	1824
SsiI	CCGC	4 cut(s)	425, 1013, 1317, 2244
SspI	AATATT	1 cut(s)	693
SspMI	CTAG	5 cut(s)	75, 1151, 1685, 2208, 2298
StuI	AGGCCT	1 cut(s)	1824
StyD4I	CCNGG	5 cut(s)	21, 577, 1090, 1252, 2270
StyI	CCWWGG	2 cut(s)	1348, 2181
TaaI	ACNGT	9 cut(s)	185, 383, 769, 1005, 1027, 1740, 2119, 2199, 2411
TaiI	ACGT	5 cut(s)	87, 1656, 2053, 2077, 2281
TaqI	TCGA	5 cut(s)	87, 229, 236, 2031, 2622
TaqII	GACCGA	1 cut(s)	1181
TatI	WGTACW	2 cut(s)	782, 1817
Tru1I	TTAA	4 cut(s)	540, 851, 1484, 2303
Tru9I	TTAA	4 cut(s)	540, 851, 1484, 2303
TscAI	CASTG	8 cut(s)	188, 345, 388, 814, 1010, 1193, 1527, 2266
TseFI	GTSAC	3 cut(s)	383, 713, 2247
TseI	GCWGC	7 cut(s)	555, 1679, 1802, 1946, 1949, 2264, 2267
Tsp45I	GTSAC	3 cut(s)	383, 713, 2247
TspRI	CASTG	8 cut(s)	188, 345, 388, 814, 1010, 1193, 1527, 2266
VpaK11BI	GGWCC	4 cut(s)	157, 616, 1319, 1733
XapI	RAATTY	5 cut(s)	839, 1343, 1925, 1937, 2058
XbaI	TCTAGA	1 cut(s)	74
XceI	RCATGY	2 cut(s)	1724, 1778
XmiI	GTMKAC	1 cut(s)	571
XmnI	GAANNNNTTC	3 cut(s)	1261, 2574, 2598
XspI	CTAG	5 cut(s)	75, 1151, 1685, 2208, 2298
Zsp2I	ATGCAT	3 cut(s)	348, 2178, 2221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.