Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008750.1

Orthogroup ID

OG0006613

Physical Location & Seq

Genomic Coordinates Reverse (-)

61649 .. 67884

Gene Structure 6236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008750.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3312 bp

atgaaagattcatcgccttatagccatgactctaatcctagtattaagaataagagagtccgaacccatagctccctcattccttgtaagaagccgcgaaccccgagacctctcggcgaaccaaccacgacggcggcgctactcgaattgaagcatctcgacgtccctctcacgtcttcggcgaccgattctccggtcaatttcatccgcctccacccggatcggccttacaccatcggccggagcccccgccgctgcgatttcgtgttcgccgaccgccgcgtcgggagtcgacattgccaggttttttatgattttttgaatcggaaattgtgtgttgttgatggagcgttggtttcgatttctcaatttaggagtcggagtggtggtggtgtaggtagggcttcgttgaatggggtttttgtgaatgggattagggttaggggaggtgaggcggtggagttgagcgatggagaccaggtctcgtttgcttgttcaactggaaattgttgtagcaatccggttcggattggatttgtgattcataagattgtttttgaggaaatgtatgtatcagataactcccaaggatctgtaattgtatcaaatcctaagggatgtaaaaggatttttgcttctagggccgacggtgtgtcgtcttccctctttacaagagcgagctttctcttgagtgagtgcagacgaattttgcgtagtgatgaccctatatcctacattaggacacgttgtagatattcttttggcaatggattcagtatagataatgtgattcgagctccgagttctgatattagtagatccggagtaaagcggaaaggatcaatgctatgtgaaacctcacagatttgttgcaatgtgaaaagtaaagtgcagtcaacttcagtgatgcagcactgtgatagagtagtgtcttcagaatcaaacagtgacttagctgctgtctgtgtgcaaggtgatgatttagatatgcaagatgatgaagtccaagttccttctgacactcgtgttgctgatggaaattttgggacttcatctttcaatttgagaagtacggataatcttcctcatgttggcgattttgttaaggagaggacttgcagcaagaatgttggtctacaacctggcaagaacttctacctgaatcgccttgcgtttgaggaccagagctcttcaagtcgtcattctgttatttccttgccagagcttcttcatcctgttcaaagtatatcacaaatatttattgcaacgttcacaagtgacattttatggtttttgtcaacctgtgagattcctagccatctgccagtaacagttgcttgccataatacagagagatgttggagttcaagcactgaaaatagaacatctgcaccttacccagaatttccaaacttagttgtagtgcatcccccgttccctgaggccatagcttttggtgaagacctgaaaagacatggcattggttgccatcatccaaaactgtttgttttacagagagatgataatattcgtgttatcattacctccgcaaatttagtgccaacacagtggaatgcagtaaccaataccatctggtggcaagatttccctcgcagaagtgctcctgattattcatcactttttactcaattttccggcagggaagtaaatcaagactcaaaatcggattttgtttcttatttggctggatttatagcaactctactgaccgacgtaccaagtcaggcccaggggattgttgagttggcaaagtatgattttggaggggcaatgggacatttggttgcttctgtacctggaatccattcatataaaactccctatataatggaatccagacactatgcctgtgctgaacgtggtccatcagggtcatctggtatgaaattcctcggatcagttgaagcatctgtggttggtctaagctacctctttcacaatgcaacagatgcaaatggtgcaaagctgaagaaactggcttcatttctcaggaaatcttgtgaaaatgcgaaagatttatcaattatcttaacaagaaacacaaacatacccgcagatgcaaatgcagtgagcattcatgtgtcaaatcctattgagttctctgagggagtagatcgtgttcaacttgggtttttgcctagaaacattgcaaaatgggtctctccactctgggatattggaatgtttagattctctggttatgtctgtcctaaggaagcccttggagcagctttaggaggaaacaacaagaaagtacggctgatactacatgtgttagagggaccaaaatttcaagatatatcaaagatgatgcaacctcaacatgttattgcattatgctctttggttgcggcaattgaaaggtgtacaggcctctggcgcctgcaggaggttttaggtcaatataaatggcctgaatcgcttgactctgagtttgtttatggtgcatcttcaattgggtcaatcaatgcaaaatttttagccgaattttcagcagctgcaggaaagaaatcatttcagtttgattctgaggagtctgatcctgagtggggatgttggaatgctcgtcatgaatcaaaagatccatccattagaatcatttttccaaccattgaaagagtgaagaatgcacgttgtggaatctttccttcaaagcgtgttctttgcttctctgagaaaacatggcaaaggctgaggacagtagatatacttcatgatgcaattccttatccttgtgatagagtaggacatccaatgcataccaaggtggcaagaagacggttccagtctaggacagatgcatcttcatgtggttgggtttattgcgggtcacataacttcagtgcagctgcctggggacgttcaatttctactccatctggtttaaaaacgaatggaagagggaatgacaattcttctctggatcagatgcttcatatttgcaattatgaactcgggatcattttcacctttccccaaacagagacagacagtagtgcttatcaaaagagcacaaacttggatgatattgttttgccatttgtggtgcctgctccaaaatacaagcgaggagacaggccagcaacaaggctggctatgtggcaggcactatctgaactttctgaaaaagagagagaaaaacatagacaggaagagatggaggcggaagctatggaagagattctagatgaagatgaagttgttgagggaacggattatgttgatgaagagaaagaagatgagaaggcttacgctgagattctttggagccaatcatctcagagctgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA HIRAN Tyr-DNA_phospho

Protein Analysis

1103

Amino Acids

122.54

Weight (kDa)

7.49

Isoelectric Point (pI)

51.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07400 AT5G07400 AT5G07400 AT5G07400 AT5G07400 AT5G07400 AT5G07400 AT5G07400
fragaria_vesca	FvH4_5g10030
malus_domestica	MD06G1128300.v1.1 MD09G1063600.v1.1
prunus_persica	Prupe.5G138100_v2.0.a1
pyrus_communis	pycom06g11850
rosa_chinensis	RchiOBHm_Chr7g0188231
rosa_laevigata	RLG00000002473 RLG00000004716
rosa_multiflora	Rmu_sc0008750.1_g000014
rosa_roxburghii	Rroxscaffold_3G00266590
rosa_rugosa	Rorug06G0489000 Rorug06G0489300
rosa_samantha	Rh7AG093600 Rh7BG095000 Rh7CG095400 Rh7DG095500 Rh7DG095600
rosa_wichuraiana	Rw7G008060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	281
AatII	GACGTC	1 cut(s)	165
AccB1I	GGYRCC	2 cut(s)	2400, 3067
AccB7I	CCANNNNNTGG	1 cut(s)	1596
AccI	GTMKAC	2 cut(s)	292, 1135
AccII	CGCG	2 cut(s)	97, 282
AccIII	TCCGGA	1 cut(s)	821
AclI	AACGTT	1 cut(s)	1268
AclWI	GGATC	9 cut(s)	228, 598, 813, 847, 1924, 2555, 2597, 2952, 2987
AcoI	YGGCCR	1 cut(s)	238
AcsI	RAATTY	8 cut(s)	705, 1039, 1403, 1552, 1907, 2309, 2495, 2507
AcuI	CTGAAG	4 cut(s)	885, 918, 2009, 2845
AcyI	GRCGYC	2 cut(s)	162, 2401
AdeI	CACNNNGTG	1 cut(s)	2657
AfaI	GTAC	5 cut(s)	1072, 1737, 1815, 2277, 2389
AfiI	CCNNNNNNNGG	7 cut(s)	217, 240, 738, 1091, 1596, 2410, 2570
AflIII	ACRYGT	3 cut(s)	743, 2290, 2344
AhdI	GACNNNNNGTC	1 cut(s)	652
AjiI	CACGTC	1 cut(s)	174
AjnI	CCWGG	6 cut(s)	300, 477, 1141, 1749, 1816, 2873
Alw21I	GWGCWC	4 cut(s)	799, 1190, 1624, 3035
Alw26I	GTCTC	6 cut(s)	100, 468, 487, 2185, 2999, 3087
AlwI	GGATC	9 cut(s)	228, 598, 813, 847, 1924, 2555, 2597, 2952, 2987
AlwNI	CAGNNNCTG	1 cut(s)	2519
Ama87I	CYCGRG	2 cut(s)	103, 2975
Aor13HI	TCCGGA	1 cut(s)	821
AoxI	GGCC	8 cut(s)	224, 238, 642, 1443, 1746, 2392, 2432, 3098
ApeKI	GCWGC	9 cut(s)	255, 910, 956, 1119, 2249, 2516, 2519, 2867, 2870
ApoI	RAATTY	8 cut(s)	705, 1039, 1403, 1552, 1907, 2309, 2495, 2507
ArsI	GACNNNNNNTTYG	2 cut(s)	2438, 2470
Asp700I	GAANNNNTTC	2 cut(s)	1825, 3201
AspLEI	GCGC	2 cut(s)	139, 2403
AspS9I	GGNCC	5 cut(s)	642, 1180, 1747, 1883, 2303
AsuC2I	CCSGG	1 cut(s)	218
AsuHPI	GGTGA	4 cut(s)	461, 986, 1469, 2980
AvaI	CYCGRG	2 cut(s)	103, 2975
AvaII	GGWCC	3 cut(s)	1180, 1883, 2303
AxyI	CCTNAGG	3 cut(s)	612, 1440, 2232
BaeI	ACNNNNGTAYC	2 cut(s)	1719, 1752
BanI	GGYRCC	2 cut(s)	2400, 3067
BanII	GRGCYC	3 cut(s)	248, 799, 1190
BarI	GAAGNNNNNNTAC	2 cut(s)	2715, 2747
BauI	CACGAG	1 cut(s)	1023
BbsI	GAAGAC	5 cut(s)	168, 651, 924, 1467, 2803
Bbv12I	GWGCWC	4 cut(s)	799, 1190, 1624, 3035
BbvCI	CCTCAGC	1 cut(s)	2714
BbvI	GCAGC	9 cut(s)	242, 922, 943, 1131, 2261, 2506, 2528, 2857, 2879
BceAI	ACGGC	2 cut(s)	147, 2294
BciT130I	CCWGG	6 cut(s)	302, 479, 1143, 1751, 1818, 2875
BcnI	CCSGG	1 cut(s)	218
BcoDI	GTCTC	6 cut(s)	100, 468, 487, 2185, 2999, 3087
BfaI	CTAG	6 cut(s)	39, 639, 1314, 2160, 2811, 3206
BfmI	CTRYAG	2 cut(s)	2405, 2520
BfoI	RGCGCY	2 cut(s)	140, 2404
Bme1390I	CCNGG	7 cut(s)	218, 302, 479, 1143, 1751, 1818, 2875
Bme18I	GGWCC	3 cut(s)	1180, 1883, 2303
BmeRI	GACNNNNNGTC	1 cut(s)	652
BmeT110I	CYCGRG	2 cut(s)	103, 2975
BmgBI	CACGTC	1 cut(s)	174
BmgT120I	GGNCC	5 cut(s)	642, 1180, 1747, 1883, 2303
BmiI	GGNNCC	6 cut(s)	245, 2304, 2402, 2804, 3069, 3290
BmrFI	CCNGG	7 cut(s)	218, 302, 479, 1143, 1751, 1818, 2875
BpiI	GAAGAC	5 cut(s)	168, 651, 924, 1467, 2803
Bpu10I	CCTNAGC	1 cut(s)	2714
BpuEI	CTTGAG	1 cut(s)	709
BpuMI	CCSGG	1 cut(s)	218
BsaHI	GRCGYC	2 cut(s)	162, 2401
BsaI	GGTCTC	4 cut(s)	100, 468, 487, 2185
BsaJI	CCNNGG	7 cut(s)	586, 1749, 1750, 1912, 2242, 2784, 2874
BsaWI	WCCGGW	3 cut(s)	193, 520, 821
Bsc4I	CCNNNNNNNGG	7 cut(s)	217, 240, 738, 1091, 1596, 2410, 2570
Bse1I	ACTGG	4 cut(s)	505, 1325, 2001, 2806
Bse21I	CCTNAGG	3 cut(s)	612, 1440, 2232
Bse3DI	GCAATG	5 cut(s)	295, 772, 880, 1797, 2166
BseAI	TCCGGA	1 cut(s)	821
BseBI	CCWGG	6 cut(s)	302, 479, 1143, 1751, 1818, 2875
BseDI	CCNNGG	7 cut(s)	586, 1749, 1750, 1912, 2242, 2784, 2874
BseGI	GGATG	9 cut(s)	204, 623, 1231, 1426, 1492, 2579, 2606, 2770, 3049
BseLI	CCNNNNNNNGG	7 cut(s)	217, 240, 738, 1091, 1596, 2410, 2570
BseMI	GCAATG	5 cut(s)	295, 772, 880, 1797, 2166
BseMII	CTCAG	9 cut(s)	1431, 2023, 2115, 2442, 2541, 2556, 2685, 2705, 3267
BseNI	ACTGG	4 cut(s)	505, 1325, 2001, 2806
BseRI	GAGGAG	2 cut(s)	2567, 3105
BseX3I	CGGCCG	1 cut(s)	238
BseXI	GCAGC	9 cut(s)	242, 922, 943, 1131, 2261, 2506, 2528, 2857, 2879
BsgI	GTGCAG	4 cut(s)	718, 911, 1374, 2886
Bsh1236I	CGCG	2 cut(s)	97, 282
Bsh1285I	CGRYCG	3 cut(s)	186, 241, 277
BshFI	GGCC	8 cut(s)	226, 240, 644, 1445, 1748, 2394, 2434, 3100
BshNI	GGYRCC	2 cut(s)	2400, 3067
BsiEI	CGRYCG	3 cut(s)	186, 241, 277
BsiHKAI	GWGCWC	4 cut(s)	799, 1190, 1624, 3035
BsiHKCI	CYCGRG	2 cut(s)	103, 2975
BsiSI	CCGG	6 cut(s)	194, 218, 241, 521, 822, 1656
BslFI	GGGAC	5 cut(s)	149, 1060, 1809, 2316, 2892
BslI	CCNNNNNNNGG	7 cut(s)	217, 240, 738, 1091, 1596, 2410, 2570
BsmAI	GTCTC	6 cut(s)	100, 468, 487, 2185, 2999, 3087
BsmFI	GGGAC	5 cut(s)	149, 1060, 1809, 2316, 2892
BsmI	GAATGC	4 cut(s)	1579, 2094, 2587, 2653
BsnI	GGCC	8 cut(s)	226, 240, 644, 1445, 1748, 2394, 2434, 3100
Bso31I	GGTCTC	4 cut(s)	100, 468, 487, 2185
BsoBI	CYCGRG	2 cut(s)	103, 2975
Bsp1286I	GDGCHC	5 cut(s)	248, 799, 1190, 1624, 3035
Bsp13I	TCCGGA	1 cut(s)	821
Bsp1407I	TGTACA	1 cut(s)	2387
BspANI	GGCC	8 cut(s)	226, 240, 644, 1445, 1748, 2394, 2434, 3100
BspCNI	CTCAG	9 cut(s)	1432, 2022, 2116, 2443, 2542, 2557, 2686, 2706, 3268
BspEI	TCCGGA	1 cut(s)	821
BspFNI	CGCG	2 cut(s)	97, 282
BspHI	TCATGA	2 cut(s)	2590, 2734
BspLI	GGNNCC	6 cut(s)	245, 2304, 2402, 2804, 3069, 3290
BspMAI	CTGCAG	2 cut(s)	2409, 2524
BspPI	GGATC	9 cut(s)	228, 598, 813, 847, 1924, 2555, 2597, 2952, 2987
BspQI	GCTCTTC	1 cut(s)	1195
BspT107I	GGYRCC	2 cut(s)	2400, 3067
BspTNI	GGTCTC	4 cut(s)	100, 468, 487, 2185
BsrDI	GCAATG	5 cut(s)	295, 772, 880, 1797, 2166
BsrGI	TGTACA	1 cut(s)	2387
BsrI	ACTGG	4 cut(s)	505, 1325, 2001, 2806
BssECI	CCNNGG	7 cut(s)	586, 1749, 1750, 1912, 2242, 2784, 2874
BssNI	GRCGYC	2 cut(s)	162, 2401
BssSI	CACGAG	1 cut(s)	1023
BssT1I	CCWWGG	3 cut(s)	586, 2242, 2784
Bst2BI	CACGAG	1 cut(s)	1023
Bst2UI	CCWGG	6 cut(s)	302, 479, 1143, 1751, 1818, 2875
Bst4CI	ACNGT	9 cut(s)	650, 917, 947, 1333, 1503, 1569, 2722, 2802, 3014
Bst6I	CTCTTC	5 cut(s)	1195, 2914, 3168, 3192, 3243
BstACI	GRCGYC	2 cut(s)	162, 2401
BstAPI	GCANNNNNTGC	3 cut(s)	1485, 1970, 1979
BstAUI	TGTACA	1 cut(s)	2387
BstC8I	GCNNGC	7 cut(s)	679, 1339, 2405, 3072, 3102, 3114, 3126
BstENI	CCTNNNNNAGG	2 cut(s)	736, 2408
BstF5I	GGATG	9 cut(s)	204, 623, 1231, 1426, 1492, 2579, 2606, 2770, 3049
BstFNI	CGCG	2 cut(s)	97, 282
BstH2I	RGCGCY	2 cut(s)	140, 2404
BstHHI	GCGC	2 cut(s)	139, 2403
BstMAI	GTCTC	6 cut(s)	100, 468, 487, 2185, 2999, 3087
BstMCI	CGRYCG	3 cut(s)	186, 241, 277
BstMWI	GCNNNNNNNGC	8 cut(s)	252, 641, 1485, 1970, 1979, 2246, 2400, 2440
BstNI	CCWGG	6 cut(s)	302, 479, 1143, 1751, 1818, 2875
BstNSI	RCATGY	2 cut(s)	2294, 2348
BstSCI	CCNGG	7 cut(s)	216, 300, 477, 1141, 1749, 1816, 2873
BstSFI	CTRYAG	2 cut(s)	2405, 2520
BstUI	CGCG	2 cut(s)	97, 282
BstV1I	GCAGC	9 cut(s)	242, 922, 943, 1131, 2261, 2506, 2528, 2857, 2879
BstV2I	GAAGAC	5 cut(s)	168, 651, 924, 1467, 2803
BstX2I	RGATCY	3 cut(s)	590, 818, 2602
BstXI	CCANNNNNNTGG	1 cut(s)	1569
BstYI	RGATCY	3 cut(s)	590, 818, 2602
BstZI	CGGCCG	1 cut(s)	238
Bsu36I	CCTNAGG	3 cut(s)	612, 1440, 2232
BsuRI	GGCC	8 cut(s)	226, 240, 644, 1445, 1748, 2394, 2434, 3100
BtgZI	GCGATG	1 cut(s)	483
BtrI	CACGTC	1 cut(s)	174
BtsCI	GGATG	9 cut(s)	204, 623, 1231, 1426, 1492, 2579, 2606, 2770, 3049
BtsI	GCAGTG	1 cut(s)	2094
BtsIMutI	CAGTG	7 cut(s)	909, 913, 952, 1371, 1574, 2094, 2869
Cac8I	GCNNGC	7 cut(s)	679, 1339, 2405, 3072, 3102, 3114, 3126
CaiI	CAGNNNCTG	1 cut(s)	2519
CciI	TCATGA	2 cut(s)	2590, 2734
CfoI	GCGC	2 cut(s)	139, 2403
Cfr13I	GGNCC	5 cut(s)	642, 1180, 1747, 1883, 2303
CseI	GACGC	1 cut(s)	271
CsiI	ACCWGGT	1 cut(s)	477
Csp6I	GTAC	5 cut(s)	1071, 1736, 1814, 2276, 2388
CviQI	GTAC	5 cut(s)	1071, 1736, 1814, 2276, 2388
DinI	GGCGCC	1 cut(s)	2402
DraI	TTTAAA	1 cut(s)	2907
DraIII	CACNNNGTG	1 cut(s)	2657
DrdI	GACNNNNNNGTC	1 cut(s)	281
DriI	GACNNNNNGTC	1 cut(s)	652
DseDI	GACNNNNNNGTC	1 cut(s)	281
EaeI	YGGCCR	1 cut(s)	238
EagI	CGGCCG	1 cut(s)	238
Eam1104I	CTCTTC	5 cut(s)	1195, 2914, 3168, 3192, 3243
Eam1105I	GACNNNNNGTC	1 cut(s)	652
EarI	CTCTTC	5 cut(s)	1195, 2914, 3168, 3192, 3243
EciI	GGCGGA	2 cut(s)	197, 3200
Ecl136II	GAGCTC	2 cut(s)	797, 1188
EclXI	CGGCCG	1 cut(s)	238
Eco130I	CCWWGG	3 cut(s)	586, 2242, 2784
Eco147I	AGGCCT	1 cut(s)	2394
Eco24I	GRGCYC	3 cut(s)	248, 799, 1190
Eco31I	GGTCTC	4 cut(s)	100, 468, 487, 2185
Eco47I	GGWCC	3 cut(s)	1180, 1883, 2303
Eco52I	CGGCCG	1 cut(s)	238
Eco53kI	GAGCTC	2 cut(s)	797, 1188
Eco57I	CTGAAG	4 cut(s)	885, 918, 2009, 2845
Eco81I	CCTNAGG	3 cut(s)	612, 1440, 2232
Eco88I	CYCGRG	2 cut(s)	103, 2975
EcoICRI	GAGCTC	2 cut(s)	797, 1188
EcoNI	CCTNNNNNAGG	2 cut(s)	736, 2408
EcoRII	CCWGG	6 cut(s)	300, 477, 1141, 1749, 1816, 2873
EcoT14I	CCWWGG	3 cut(s)	586, 2242, 2784
EcoT22I	ATGCAT	2 cut(s)	2781, 2824
EcoT38I	GRGCYC	3 cut(s)	248, 799, 1190
EgeI	GGCGCC	1 cut(s)	2402
EheI	GGCGCC	1 cut(s)	2402
ErhI	CCWWGG	3 cut(s)	586, 2242, 2784
FaqI	GGGAC	5 cut(s)	149, 1060, 1809, 2316, 2892
FauI	CCCGC	3 cut(s)	257, 2080, 2840
FblI	GTMKAC	2 cut(s)	292, 1135
FokI	GGATG	9 cut(s)	191, 630, 1218, 1413, 1479, 2586, 2593, 2757, 3056
FriOI	GRGCYC	3 cut(s)	248, 799, 1190
FspBI	CTAG	6 cut(s)	39, 639, 1314, 2160, 2811, 3206
GlaI	GCGC	2 cut(s)	138, 2402
HaeII	RGCGCY	2 cut(s)	140, 2404
HaeIII	GGCC	8 cut(s)	226, 240, 644, 1445, 1748, 2394, 2434, 3100
HapII	CCGG	6 cut(s)	194, 218, 241, 521, 822, 1656
HgaI	GACGC	1 cut(s)	271
HhaI	GCGC	2 cut(s)	139, 2403
Hin1I	GRCGYC	2 cut(s)	162, 2401
Hin6I	GCGC	2 cut(s)	137, 2401
HinP1I	GCGC	2 cut(s)	137, 2401
HincII	GTYRAC	3 cut(s)	293, 897, 1299
HindII	GTYRAC	3 cut(s)	293, 897, 1299
HpaII	CCGG	6 cut(s)	194, 218, 241, 521, 822, 1656
HphI	GGTGA	4 cut(s)	461, 986, 1469, 2980
Hpy166II	GTNNAC	6 cut(s)	293, 897, 1136, 1272, 1299, 2388
Hpy8I	GTNNAC	6 cut(s)	293, 897, 1136, 1272, 1299, 2388
Hpy99I	CGWCG	5 cut(s)	133, 164, 287, 650, 1736
HpyAV	CCTTC	3 cut(s)	1023, 2679, 3259
HpyCH4III	ACNGT	9 cut(s)	650, 917, 947, 1333, 1503, 1569, 2722, 2802, 3014
HpyCH4IV	ACGT	8 cut(s)	162, 173, 745, 1268, 1734, 1879, 2653, 2881
HpyF10VI	GCNNNNNNNGC	8 cut(s)	252, 641, 1485, 1970, 1979, 2246, 2400, 2440
HpySE526I	ACGT	8 cut(s)	162, 173, 745, 1268, 1734, 1879, 2653, 2881
Hsp92I	GRCGYC	2 cut(s)	162, 2401
HspAI	GCGC	2 cut(s)	137, 2401
KasI	GGCGCC	1 cut(s)	2400
Kpn2I	TCCGGA	1 cut(s)	821
LguI	GCTCTTC	1 cut(s)	1195
LmnI	GCTCC	8 cut(s)	77, 243, 347, 802, 1627, 2246, 3079, 3288
Lsp1109I	GCAGC	9 cut(s)	242, 922, 943, 1131, 2261, 2506, 2528, 2857, 2879
MabI	ACCWGGT	1 cut(s)	477
MaeI	CTAG	6 cut(s)	39, 639, 1314, 2160, 2811, 3206
MaeII	ACGT	8 cut(s)	162, 173, 745, 1268, 1734, 1879, 2653, 2881
MaeIII	GTNAC	5 cut(s)	947, 1277, 1327, 1579, 2850
MfeI	CAATTG	2 cut(s)	2376, 2475
MflI	RGATCY	3 cut(s)	590, 818, 2602
MhlI	GDGCHC	5 cut(s)	248, 799, 1190, 1624, 3035
Mly113I	GGCGCC	1 cut(s)	2401
MlyI	GAGTC	7 cut(s)	23, 66, 298, 385, 1670, 2441, 2564
MmeI	TCCRAC	4 cut(s)	359, 1340, 2558, 2651
Mph1103I	ATGCAT	2 cut(s)	2781, 2824
MroI	TCCGGA	1 cut(s)	821
MroXI	GAANNNNTTC	2 cut(s)	1825, 3201
MseI	TTAA	4 cut(s)	45, 1104, 2051, 2906
MslI	CAYNNNNRTG	2 cut(s)	2099, 2827
MspA1I	CMGCKG	3 cut(s)	255, 2519, 2870
MspI	CCGG	6 cut(s)	194, 218, 241, 521, 822, 1656
MspR9I	CCNGG	7 cut(s)	218, 302, 479, 1143, 1751, 1818, 2875
MunI	CAATTG	2 cut(s)	2376, 2475
Mva1269I	GAATGC	4 cut(s)	1579, 2094, 2587, 2653
MvaI	CCWGG	6 cut(s)	302, 479, 1143, 1751, 1818, 2875
MvnI	CGCG	2 cut(s)	97, 282
MwoI	GCNNNNNNNGC	8 cut(s)	252, 641, 1485, 1970, 1979, 2246, 2400, 2440
NarI	GGCGCC	1 cut(s)	2401
NciI	CCSGG	1 cut(s)	218
NlaIV	GGNNCC	6 cut(s)	245, 2304, 2402, 2804, 3069, 3290
NmeAIII	GCCGAG	1 cut(s)	93
NmuCI	GTSAC	3 cut(s)	947, 1277, 2850
NsiI	ATGCAT	2 cut(s)	2781, 2824
NspI	RCATGY	2 cut(s)	2294, 2348
PagI	TCATGA	2 cut(s)	2590, 2734
PasI	CCCWGGG	1 cut(s)	1750
PceI	AGGCCT	1 cut(s)	2394
PciI	ACATGT	2 cut(s)	2290, 2344
PciSI	GCTCTTC	1 cut(s)	1195
PcsI	WCGNNNNNNNCGW	3 cut(s)	179, 270, 709
PctI	GAATGC	4 cut(s)	1579, 2094, 2587, 2653
PdmI	GAANNNNTTC	2 cut(s)	1825, 3201
PflFI	GACNNNGTC	1 cut(s)	479
PflMI	CCANNNNNTGG	1 cut(s)	1596
PleI	GAGTC	7 cut(s)	23, 65, 297, 384, 1670, 2441, 2563
PluTI	GGCGCC	1 cut(s)	2404
PpsI	GAGTC	7 cut(s)	23, 65, 297, 384, 1670, 2441, 2563
PscI	ACATGT	2 cut(s)	2290, 2344
Psp124BI	GAGCTC	2 cut(s)	799, 1190
Psp1406I	AACGTT	1 cut(s)	1268
Psp6I	CCWGG	6 cut(s)	300, 477, 1141, 1749, 1816, 2873
PspGI	CCWGG	6 cut(s)	300, 477, 1141, 1749, 1816, 2873
PspN4I	GGNNCC	6 cut(s)	245, 2304, 2402, 2804, 3069, 3290
PspPI	GGNCC	5 cut(s)	642, 1180, 1747, 1883, 2303
PsrI	GAACNNNNNNTAC	2 cut(s)	2124, 2156
PstI	CTGCAG	2 cut(s)	2409, 2524
PstNI	CAGNNNCTG	1 cut(s)	2519
PsuI	RGATCY	3 cut(s)	590, 818, 2602
PsyI	GACNNNGTC	1 cut(s)	479
PvuII	CAGCTG	2 cut(s)	2519, 2870
RsaI	GTAC	5 cut(s)	1072, 1737, 1815, 2277, 2389
RsaNI	GTAC	5 cut(s)	1071, 1736, 1814, 2276, 2388
RseI	CAYNNNNRTG	2 cut(s)	2099, 2827
SacI	GAGCTC	2 cut(s)	799, 1190
SalI	GTCGAC	1 cut(s)	291
SapI	GCTCTTC	1 cut(s)	1195
SaqAI	TTAA	4 cut(s)	45, 1104, 2051, 2906
Sau96I	GGNCC	5 cut(s)	642, 1180, 1747, 1883, 2303
SbfI	CCTGCAGG	1 cut(s)	2409
SchI	GAGTC	7 cut(s)	23, 66, 298, 385, 1670, 2441, 2564
ScrFI	CCNGG	7 cut(s)	218, 302, 479, 1143, 1751, 1818, 2875
SdaI	CCTGCAGG	1 cut(s)	2409
SduI	GDGCHC	5 cut(s)	248, 799, 1190, 1624, 3035
SexAI	ACCWGGT	1 cut(s)	477
SfcI	CTRYAG	2 cut(s)	2405, 2520
SfoI	GGCGCC	1 cut(s)	2402
SinI	GGWCC	3 cut(s)	1180, 1883, 2303
SmiMI	CAYNNNNRTG	2 cut(s)	2099, 2827
SmlI	CTYRAG	1 cut(s)	688
SmoI	CTYRAG	1 cut(s)	688
Sse8387I	CCTGCAGG	1 cut(s)	2409
SseBI	AGGCCT	1 cut(s)	2394
SspDI	GGCGCC	1 cut(s)	2400
SspI	AATATT	2 cut(s)	1257, 1528
SspMI	CTAG	6 cut(s)	39, 639, 1314, 2160, 2811, 3206
SstI	GAGCTC	2 cut(s)	799, 1190
StuI	AGGCCT	1 cut(s)	2394
StyD4I	CCNGG	7 cut(s)	216, 300, 477, 1141, 1749, 1816, 2873
StyI	CCWWGG	3 cut(s)	586, 2242, 2784
TaaI	ACNGT	9 cut(s)	650, 917, 947, 1333, 1503, 1569, 2722, 2802, 3014
TaiI	ACGT	8 cut(s)	165, 176, 748, 1271, 1737, 1882, 2656, 2884
TaqI	TCGA	5 cut(s)	144, 159, 292, 359, 793
TaqII	GACCGA	2 cut(s)	200, 1745
TatI	WGTACW	1 cut(s)	2387
TauI	GCSGC	5 cut(s)	97, 137, 255, 282, 2375
Tru1I	TTAA	4 cut(s)	45, 1104, 2051, 2906
Tru9I	TTAA	4 cut(s)	45, 1104, 2051, 2906
TscAI	CASTG	7 cut(s)	909, 920, 952, 1378, 1574, 2094, 2869
TseFI	GTSAC	3 cut(s)	947, 1277, 2850
TseI	GCWGC	9 cut(s)	255, 910, 956, 1119, 2249, 2516, 2519, 2867, 2870
Tsp45I	GTSAC	3 cut(s)	947, 1277, 2850
TspGWI	ACGGA	2 cut(s)	1088, 3248
TspRI	CASTG	7 cut(s)	909, 920, 952, 1378, 1574, 2094, 2869
Tth111I	GACNNNGTC	1 cut(s)	479
Van91I	CCANNNNNTGG	1 cut(s)	1596
VpaK11BI	GGWCC	3 cut(s)	1180, 1883, 2303
XagI	CCTNNNNNAGG	2 cut(s)	736, 2408
XapI	RAATTY	8 cut(s)	705, 1039, 1403, 1552, 1907, 2309, 2495, 2507
XbaI	TCTAGA	1 cut(s)	3205
XceI	RCATGY	2 cut(s)	2294, 2348
XmiI	GTMKAC	2 cut(s)	292, 1135
XmnI	GAANNNNTTC	2 cut(s)	1825, 3201
XspI	CTAG	6 cut(s)	39, 639, 1314, 2160, 2811, 3206
ZraI	GACGTC	1 cut(s)	163
Zsp2I	ATGCAT	2 cut(s)	2781, 2824

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.