Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0006613

Physical Location & Seq

Genomic Coordinates Forward (+)

4353986 .. 4356938

Gene Structure 2953 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1063600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGCAGTTGACTTCTCAGCTGGCTGGATTTATGGCAATGCTACTGACTGATGTACCTAGTCAGGCCCAGTGGATTGTTGAATTGACAAAATATGATTTTGGAGGTGCAACTGGACATTTAGTCGCTTCTGTTCCTGGAGTTCATTCTTATAAAACTCCCTTTATGTTGGATTCCAGGCACTTCGGGCTTGTAAGTGCTTTCATTTGTGATGTCTACCTCTTTTGCAATGCCAAAGACTCAAATGGTGCAAAGCTTAAGAAATTGGCTTCATTCCTGAGGAAATCATGTGAACATGCAAAACCTTTATCAATTGTTTTAACAAGAAACACAAATGTTCCTGCAGAAGCAAATGCAGTGAATATTCTTGTTCCTGACTCCAATGAGGGAGCTGACTCTGTTCAACTTGGCTTCTTGCCAAGAAATGTTGCAAAATGGGTCACTCCACTGTGGGATATCGGACTCGTCAGCTTCTCTGGTTATATCTGTCCTAAAGAAGCTCTTGCAGCAGCTTTAGGAGGAGGAAACAACAAGAAAGTGCAATTGATACTGCATGTGTCACAGGGACCCAAGTTTGAGGATATATCAAAGATCATGGAATCTCAACATATTTTTGCATTATGCTCTCTGATTGGTGCCGTTCAAAGGTGTACAGGCCTCTGGCGACTGCAGGAGGTCAGTATAAATGGCCCGAATCACTTGACTCTGATTTTGTTTATGAAAACATGGCAAAGGCTGAGGACTATAGACATACTTCATGATGCACTTCCTCACCCCTACGATAGAGTAGGACATCCAATGCACAGCAAGGTGGCACGGAGACGCTTCCACTCAAAGACAGACGGATCTTCATTTGGTTGGGTTTATTGTGGTTCCCATAATTTCAGTGCAGCGGCCTGGGGACGACCAATCAATAGTCCATTTGGTTTAAACATGAACGGACTAGGGAAGGCCAACTCTACTTTGGGTCAGATGCTTCGTATTTGCAACTATGAACTTGGGATCATTTTCACCTTTCCCCCAACAGACACAGATGGTAGCGCCAACAAAAATAGCGCAAAATTGGATAATATTGTTTTGCCATTCGTTGTGCCTGCTCCAAAATACAGGCGAGGAGACAGGCCAGCAACAGGGAAGGCTATGAGGGAGGCATTAGCCGAACTTACTGAACAAGAGAGACAAAGACTTTTAGAAGAAGCTACAACCGAGGAAATTATGGAAGAGACTCCAGACGAAGATGAAGTAGTTGAGGCGGATGATTATGTTGCAGAAGAGAAGGAGGAGGAGAAGGCTTACGCCGAGATACTTTGGAGCCAAGTAGATTCATCCGAGAGCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA HIRAN Tyr-DNA_phospho

Protein Analysis

446

Amino Acids

49.2

Weight (kDa)

6.03

Isoelectric Point (pI)

45.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HIRAN	PF08797	104 - 164	3.3e-08	HIRAN domain
Tyr-DNA_phospho	PF06087	259 - 368	2.6e-12	Tyrosyl-DNA phosphodiesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07400 AT5G07400 AT5G07400 AT5G07400 AT5G07400 AT5G07400 AT5G07400 AT5G07400
fragaria_vesca	FvH4_5g10030
malus_domestica	MD06G1128300.v1.1 MD09G1063600.v1.1
prunus_persica	Prupe.5G138100_v2.0.a1
pyrus_communis	pycom06g11850
rosa_chinensis	RchiOBHm_Chr7g0188231
rosa_laevigata	RLG00000002473 RLG00000004716
rosa_multiflora	Rmu_sc0008750.1_g000014
rosa_roxburghii	Rroxscaffold_3G00266590
rosa_rugosa	Rorug06G0489000 Rorug06G0489300
rosa_samantha	Rh7AG093600 Rh7BG095000 Rh7CG095400 Rh7DG095500 Rh7DG095600
rosa_wichuraiana	Rw7G008060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	150
AccB1I	GGYRCC	1 cut(s)	632
AccI	GTMKAC	1 cut(s)	213
AciI	CCGC	2 cut(s)	890, 1250
AclWI	GGATC	2 cut(s)	850, 1007
AfaI	GTAC	2 cut(s)	54, 649
AfiI	CCNNNNNNNGG	2 cut(s)	642, 1127
AflII	CTTAAG	1 cut(s)	254
AgsI	TTSAA	3 cut(s)	80, 401, 641
AhdI	GACNNNNNGTC	1 cut(s)	119
AjnI	CCWGG	3 cut(s)	133, 173, 893
AluBI	AGCT	7 cut(s)	19, 253, 389, 468, 497, 509, 1196
AluI	AGCT	7 cut(s)	19, 253, 389, 468, 497, 509, 1196
Alw26I	GTCTC	4 cut(s)	811, 1107, 1168, 1214
AlwI	GGATC	2 cut(s)	850, 1007
AoxI	GGCC	6 cut(s)	63, 652, 685, 891, 948, 1118
ApeKI	GCWGC	3 cut(s)	503, 506, 887
ArsI	GACNNNNNNTTYG	2 cut(s)	691, 723
AspLEI	GCGC	2 cut(s)	1040, 1055
AspS9I	GGNCC	3 cut(s)	64, 563, 686
AsuHPI	GGTGA	2 cut(s)	761, 1000
AvaII	GGWCC	1 cut(s)	563
AxyI	CCTNAGG	1 cut(s)	275
BaeI	ACNNNNGTAYC	2 cut(s)	36, 69
BanI	GGYRCC	1 cut(s)	632
BbvCI	CCTCAGC	1 cut(s)	734
BbvI	GCAGC	3 cut(s)	515, 518, 899
BccI	CCATC	1 cut(s)	1025
BceAI	ACGGC	1 cut(s)	620
BciT130I	CCWGG	3 cut(s)	135, 175, 895
BcoDI	GTCTC	4 cut(s)	811, 1107, 1168, 1214
BfaI	CTAG	2 cut(s)	57, 941
BfmI	CTRYAG	3 cut(s)	339, 665, 741
BfoI	RGCGCY	1 cut(s)	1041
BfrI	CTTAAG	1 cut(s)	254
BisI	GCNGC	4 cut(s)	504, 507, 888, 891
BlsI	GCNGC	4 cut(s)	505, 508, 889, 892
Bme1390I	CCNGG	3 cut(s)	135, 175, 895
Bme18I	GGWCC	1 cut(s)	563
BmeRI	GACNNNNNGTC	1 cut(s)	119
BmgT120I	GGNCC	3 cut(s)	64, 563, 686
BmiI	GGNNCC	5 cut(s)	564, 565, 634, 871, 1310
BmrFI	CCNGG	3 cut(s)	135, 175, 895
BmrI	ACTGGG	1 cut(s)	61
BmsI	GCATC	2 cut(s)	748, 960
BmuI	ACTGGG	1 cut(s)	61
BpmI	CTGGAG	2 cut(s)	156, 1209
Bpu10I	CCTNAGC	1 cut(s)	734
BsaJI	CCNNGG	2 cut(s)	894, 1203
Bsc4I	CCNNNNNNNGG	2 cut(s)	642, 1127
Bse1I	ACTGG	2 cut(s)	67, 115
Bse21I	CCTNAGG	1 cut(s)	275
Bse3DI	GCAATG	2 cut(s)	42, 232
BseBI	CCWGG	3 cut(s)	135, 175, 895
BseDI	CCNNGG	2 cut(s)	894, 1203
BseGI	GGATG	3 cut(s)	790, 1258, 1322
BseLI	CCNNNNNNNGG	2 cut(s)	642, 1127
BseMI	GCAATG	2 cut(s)	42, 232
BseMII	CTCAG	3 cut(s)	29, 266, 725
BseNI	ACTGG	2 cut(s)	67, 115
BseRI	GAGGAG	4 cut(s)	531, 1125, 1292, 1295
BseXI	GCAGC	3 cut(s)	515, 518, 899
BsgI	GTGCAG	1 cut(s)	906
BshFI	GGCC	6 cut(s)	65, 654, 687, 893, 950, 1120
BshNI	GGYRCC	1 cut(s)	632
BslFI	GGGAC	2 cut(s)	576, 912
BslI	CCNNNNNNNGG	2 cut(s)	642, 1127
BsmAI	GTCTC	4 cut(s)	811, 1107, 1168, 1214
BsmBI	CGTCTC	1 cut(s)	811
BsmFI	GGGAC	2 cut(s)	576, 912
BsnI	GGCC	6 cut(s)	65, 654, 687, 893, 950, 1120
Bsp1407I	TGTACA	1 cut(s)	647
Bsp143I	GATC	3 cut(s)	588, 842, 999
BspACI	CCGC	2 cut(s)	890, 1250
BspANI	GGCC	6 cut(s)	65, 654, 687, 893, 950, 1120
BspCNI	CTCAG	3 cut(s)	28, 267, 726
BspHI	TCATGA	1 cut(s)	754
BspLI	GGNNCC	5 cut(s)	564, 565, 634, 871, 1310
BspMAI	CTGCAG	2 cut(s)	343, 669
BspPI	GGATC	2 cut(s)	850, 1007
BspT107I	GGYRCC	1 cut(s)	632
BspTI	CTTAAG	1 cut(s)	254
BsrDI	GCAATG	2 cut(s)	42, 232
BsrGI	TGTACA	1 cut(s)	647
BsrI	ACTGG	2 cut(s)	67, 115
BssECI	CCNNGG	2 cut(s)	894, 1203
BssMI	GATC	3 cut(s)	588, 842, 999
Bst2UI	CCWGG	3 cut(s)	135, 175, 895
Bst4CI	ACNGT	1 cut(s)	447
Bst6I	CTCTTC	2 cut(s)	1212, 1263
BstAFI	CTTAAG	1 cut(s)	254
BstAUI	TGTACA	1 cut(s)	647
BstC8I	GCNNGC	3 cut(s)	21, 1092, 1122
BstDEI	CTNAG	3 cut(s)	15, 275, 734
BstF5I	GGATG	3 cut(s)	790, 1258, 1322
BstH2I	RGCGCY	1 cut(s)	1041
BstHHI	GCGC	2 cut(s)	1040, 1055
BstKTI	GATC	3 cut(s)	591, 845, 1002
BstMAI	GTCTC	4 cut(s)	811, 1107, 1168, 1214
BstMBI	GATC	3 cut(s)	588, 842, 999
BstMWI	GCNNNNNNNGC	2 cut(s)	184, 503
BstNI	CCWGG	3 cut(s)	135, 175, 895
BstNSI	RCATGY	2 cut(s)	296, 554
BstSCI	CCNGG	3 cut(s)	133, 173, 893
BstSFI	CTRYAG	3 cut(s)	339, 665, 741
BstV1I	GCAGC	3 cut(s)	515, 518, 899
BstX2I	RGATCY	1 cut(s)	842
BstYI	RGATCY	1 cut(s)	842
Bsu36I	CCTNAGG	1 cut(s)	275
BsuRI	GGCC	6 cut(s)	65, 654, 687, 893, 950, 1120
BtsCI	GGATG	3 cut(s)	790, 1258, 1322
BtsI	GCAGTG	1 cut(s)	360
BtsIMutI	CAGTG	4 cut(s)	74, 360, 443, 889
Cac8I	GCNNGC	3 cut(s)	21, 1092, 1122
CciI	TCATGA	1 cut(s)	754
CfoI	GCGC	2 cut(s)	1040, 1055
Cfr13I	GGNCC	3 cut(s)	64, 563, 686
CseI	GACGC	1 cut(s)	828
Csp6I	GTAC	2 cut(s)	53, 648
CviAII	CATG	7 cut(s)	285, 293, 551, 592, 723, 755, 931
CviQI	GTAC	2 cut(s)	53, 648
DdeI	CTNAG	3 cut(s)	15, 275, 734
DpnI	GATC	3 cut(s)	590, 844, 1001
DpnII	GATC	3 cut(s)	588, 842, 999
DraI	TTTAAA	1 cut(s)	927
DriI	GACNNNNNGTC	1 cut(s)	119
Eam1104I	CTCTTC	2 cut(s)	1212, 1263
Eam1105I	GACNNNNNGTC	1 cut(s)	119
EarI	CTCTTC	2 cut(s)	1212, 1263
EciI	GGCGGA	1 cut(s)	1265
Eco147I	AGGCCT	1 cut(s)	654
Eco32I	GATATC	1 cut(s)	454
Eco47I	GGWCC	1 cut(s)	563
Eco81I	CCTNAGG	1 cut(s)	275
EcoO109I	RGGNCCY	1 cut(s)	563
EcoRII	CCWGG	3 cut(s)	133, 173, 893
EcoRV	GATATC	1 cut(s)	454
Esp3I	CGTCTC	1 cut(s)	811
FaeI	CATG	7 cut(s)	288, 296, 554, 595, 726, 758, 934
FalI	AAGNNNNNCTT	2 cut(s)	483, 515
FaqI	GGGAC	2 cut(s)	576, 912
FatI	CATG	7 cut(s)	284, 292, 550, 591, 722, 754, 930
FblI	GTMKAC	1 cut(s)	213
Fnu4HI	GCNGC	4 cut(s)	504, 507, 888, 891
FokI	GGATG	3 cut(s)	777, 1265, 1309
Fsp4HI	GCNGC	4 cut(s)	504, 507, 888, 891
FspBI	CTAG	2 cut(s)	57, 941
GlaI	GCGC	2 cut(s)	1039, 1054
GluI	GCNGC	4 cut(s)	504, 507, 888, 891
GsuI	CTGGAG	2 cut(s)	156, 1209
HaeII	RGCGCY	1 cut(s)	1041
HaeIII	GGCC	6 cut(s)	65, 654, 687, 893, 950, 1120
HgaI	GACGC	1 cut(s)	828
HhaI	GCGC	2 cut(s)	1040, 1055
Hin1II	CATG	7 cut(s)	288, 296, 554, 595, 726, 758, 934
Hin6I	GCGC	2 cut(s)	1038, 1053
HinP1I	GCGC	2 cut(s)	1038, 1053
HincII	GTYRAC	1 cut(s)	9
HindII	GTYRAC	1 cut(s)	9
HindIII	AAGCTT	1 cut(s)	251
HphI	GGTGA	2 cut(s)	761, 1000
Hpy166II	GTNNAC	4 cut(s)	9, 214, 290, 648
Hpy188I	TCNGA	5 cut(s)	458, 627, 705, 969, 1327
Hpy188III	TCNNGA	4 cut(s)	274, 371, 755, 1226
Hpy8I	GTNNAC	4 cut(s)	9, 214, 290, 648
HpyAV	CCTTC	4 cut(s)	940, 1126, 1267, 1279
HpyCH4III	ACNGT	1 cut(s)	447
HpyF10VI	GCNNNNNNNGC	2 cut(s)	184, 503
HpyF3I	CTNAG	3 cut(s)	15, 275, 734
Hsp92II	CATG	7 cut(s)	288, 296, 554, 595, 726, 758, 934
HspAI	GCGC	2 cut(s)	1038, 1053
KflI	GGGWCCC	1 cut(s)	563
Kzo9I	GATC	3 cut(s)	588, 842, 999
LmnI	GCTCC	3 cut(s)	386, 1099, 1308
Lsp1109I	GCAGC	3 cut(s)	515, 518, 899
LweI	GCATC	2 cut(s)	748, 960
MaeI	CTAG	2 cut(s)	57, 941
MaeIII	GTNAC	2 cut(s)	436, 555
MalI	GATC	3 cut(s)	590, 844, 1001
MboI	GATC	3 cut(s)	588, 842, 999
MboII	GAAGA	5 cut(s)	837, 1202, 1229, 1244, 1280
MfeI	CAATTG	2 cut(s)	309, 539
MflI	RGATCY	1 cut(s)	842
MluCI	AATT	7 cut(s)	80, 260, 309, 539, 877, 1058, 1209
MlyI	GAGTC	6 cut(s)	230, 368, 386, 453, 694, 1216
MmeI	TCCRAC	1 cut(s)	147
MseI	TTAA	3 cut(s)	255, 317, 926
MspA1I	CMGCKG	2 cut(s)	19, 890
MspCI	CTTAAG	1 cut(s)	254
MspR9I	CCNGG	3 cut(s)	135, 175, 895
MssI	GTTTAAAC	1 cut(s)	927
MunI	CAATTG	2 cut(s)	309, 539
MvaI	CCWGG	3 cut(s)	135, 175, 895
MwoI	GCNNNNNNNGC	2 cut(s)	184, 503
NdeII	GATC	3 cut(s)	588, 842, 999
NlaIII	CATG	7 cut(s)	288, 296, 554, 595, 726, 758, 934
NlaIV	GGNNCC	5 cut(s)	564, 565, 634, 871, 1310
NmeAIII	GCCGAG	1 cut(s)	1321
NmuCI	GTSAC	2 cut(s)	436, 555
NspI	RCATGY	2 cut(s)	296, 554
PagI	TCATGA	1 cut(s)	754
PceI	AGGCCT	1 cut(s)	654
PfeI	GAWTC	4 cut(s)	170, 596, 691, 1319
PfoI	TCCNGGA	1 cut(s)	133
PkrI	GCNGC	4 cut(s)	505, 508, 889, 892
PleI	GAGTC	6 cut(s)	230, 368, 386, 453, 694, 1216
PmeI	GTTTAAAC	1 cut(s)	927
PpsI	GAGTC	6 cut(s)	230, 368, 386, 453, 694, 1216
PpuMI	RGGWCCY	1 cut(s)	563
PsiI	TTATAA	1 cut(s)	150
Psp5II	RGGWCCY	1 cut(s)	563
Psp6I	CCWGG	3 cut(s)	133, 173, 893
PspGI	CCWGG	3 cut(s)	133, 173, 893
PspN4I	GGNNCC	5 cut(s)	564, 565, 634, 871, 1310
PspPI	GGNCC	3 cut(s)	64, 563, 686
PspPPI	RGGWCCY	1 cut(s)	563
PstI	CTGCAG	2 cut(s)	343, 669
PsuI	RGATCY	1 cut(s)	842
PvuII	CAGCTG	1 cut(s)	19
RsaI	GTAC	2 cut(s)	54, 649
RsaNI	GTAC	2 cut(s)	53, 648
SaqAI	TTAA	3 cut(s)	255, 317, 926
SatI	GCNGC	4 cut(s)	504, 507, 888, 891
Sau3AI	GATC	3 cut(s)	588, 842, 999
Sau96I	GGNCC	3 cut(s)	64, 563, 686
SchI	GAGTC	6 cut(s)	230, 368, 386, 453, 694, 1216
ScrFI	CCNGG	3 cut(s)	135, 175, 895
SfaNI	GCATC	2 cut(s)	748, 960
SfcI	CTRYAG	3 cut(s)	339, 665, 741
SinI	GGWCC	1 cut(s)	563
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	7 cut(s)	80, 260, 309, 539, 877, 1058, 1209
SseBI	AGGCCT	1 cut(s)	654
SsiI	CCGC	2 cut(s)	890, 1250
SspI	AATATT	2 cut(s)	361, 1069
SspMI	CTAG	2 cut(s)	57, 941
StuI	AGGCCT	1 cut(s)	654
StyD4I	CCNGG	3 cut(s)	133, 173, 893
TaaI	ACNGT	1 cut(s)	447
TasI	AATT	7 cut(s)	80, 260, 309, 539, 877, 1058, 1209
TatI	WGTACW	1 cut(s)	647
TauI	GCSGC	1 cut(s)	893
TfiI	GAWTC	4 cut(s)	170, 596, 691, 1319
Tru1I	TTAA	3 cut(s)	255, 317, 926
Tru9I	TTAA	3 cut(s)	255, 317, 926
TscAI	CASTG	4 cut(s)	74, 360, 450, 889
TseFI	GTSAC	2 cut(s)	436, 555
TseI	GCWGC	3 cut(s)	503, 506, 887
Tsp45I	GTSAC	2 cut(s)	436, 555
TspGWI	ACGGA	3 cut(s)	829, 855, 951
TspRI	CASTG	4 cut(s)	74, 360, 450, 889
Vha464I	CTTAAG	1 cut(s)	254
VpaK11BI	GGWCC	1 cut(s)	563
XceI	RCATGY	2 cut(s)	296, 554
XcmI	CCANNNNNNNNNTGG	1 cut(s)	958
XmiI	GTMKAC	1 cut(s)	213
XspI	CTAG	2 cut(s)	57, 941

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.