Tyrosyl-DNA phosphodiesterase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G07400 AT5G07400 AT5G07400 AT5G07400 AT5G07400 AT5G07400 AT5G07400 AT5G07400 |
| fragaria_vesca | FvH4_5g10030 |
| malus_domestica | MD06G1128300.v1.1 MD09G1063600.v1.1 |
| prunus_persica | Prupe.5G138100_v2.0.a1 |
| pyrus_communis | pycom06g11850 |
| rosa_chinensis | RchiOBHm_Chr7g0188231 |
| rosa_laevigata | RLG00000002473 RLG00000004716 |
| rosa_multiflora | Rmu_sc0008750.1_g000014 |
| rosa_roxburghii | Rroxscaffold_3G00266590 |
| rosa_rugosa | Rorug06G0489000 Rorug06G0489300 |
| rosa_samantha | Rh7AG093600 Rh7BG095000 Rh7CG095400 Rh7DG095500 Rh7DG095600 |
| rosa_wichuraiana | Rw7G008060 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 281 |
| AatII | GACGTC | 1 cut(s) | 165 |
| AccB1I | GGYRCC | 2 cut(s) | 2412, 3079 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1599 |
| AccI | GTMKAC | 2 cut(s) | 292, 1138 |
| AccII | CGCG | 2 cut(s) | 97, 282 |
| AclI | AACGTT | 1 cut(s) | 1271 |
| AclWI | GGATC | 8 cut(s) | 51, 598, 850, 1939, 2567, 2609, 2964, 2999 |
| AcoI | YGGCCR | 1 cut(s) | 238 |
| AcsI | RAATTY | 7 cut(s) | 705, 1042, 1406, 1555, 2321, 2507, 2519 |
| AcuI | CTGAAG | 4 cut(s) | 888, 921, 2024, 2857 |
| AcyI | GRCGYC | 3 cut(s) | 162, 656, 2413 |
| AdeI | CACNNNGTG | 1 cut(s) | 2669 |
| AfaI | GTAC | 5 cut(s) | 1075, 1740, 1818, 2289, 2401 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 217, 240, 1094, 1599, 2422, 2582 |
| AflIII | ACRYGT | 3 cut(s) | 746, 2302, 2356 |
| AjnI | CCWGG | 4 cut(s) | 300, 1144, 1819, 2885 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2136, 2168 |
| Alw21I | GWGCWC | 4 cut(s) | 802, 1193, 1627, 3047 |
| Alw26I | GTCTC | 6 cut(s) | 116, 361, 487, 2197, 3011, 3099 |
| AlwI | GGATC | 8 cut(s) | 51, 598, 850, 1939, 2567, 2609, 2964, 2999 |
| Ama87I | CYCGRG | 2 cut(s) | 795, 2227 |
| AoxI | GGCC | 7 cut(s) | 224, 238, 1446, 1749, 2404, 2444, 3110 |
| ApeKI | GCWGC | 8 cut(s) | 255, 913, 959, 1122, 2261, 2528, 2879, 2882 |
| ApoI | RAATTY | 7 cut(s) | 705, 1042, 1406, 1555, 2321, 2507, 2519 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2450, 2482 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1828, 3213 |
| AspLEI | GCGC | 2 cut(s) | 139, 2415 |
| AspS9I | GGNCC | 5 cut(s) | 1183, 1750, 1898, 1994, 2315 |
| AsuC2I | CCSGG | 1 cut(s) | 218 |
| AsuHPI | GGTGA | 4 cut(s) | 461, 989, 1472, 2992 |
| AvaI | CYCGRG | 2 cut(s) | 795, 2227 |
| AvaII | GGWCC | 4 cut(s) | 1183, 1898, 1994, 2315 |
| AxyI | CCTNAGG | 3 cut(s) | 612, 1443, 2244 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1722, 1755 |
| BanI | GGYRCC | 2 cut(s) | 2412, 3079 |
| BanII | GRGCYC | 3 cut(s) | 248, 802, 1193 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2727, 2759 |
| BauI | CACGAG | 1 cut(s) | 1026 |
| BbsI | GAAGAC | 4 cut(s) | 651, 927, 1470, 2815 |
| Bbv12I | GWGCWC | 4 cut(s) | 802, 1193, 1627, 3047 |
| BbvCI | CCTCAGC | 1 cut(s) | 2726 |
| BbvI | GCAGC | 8 cut(s) | 242, 925, 946, 1134, 2273, 2540, 2869, 2891 |
| BceAI | ACGGC | 3 cut(s) | 147, 657, 2306 |
| BciT130I | CCWGG | 4 cut(s) | 302, 1146, 1821, 2887 |
| BciVI | GTATCC | 1 cut(s) | 1440 |
| BcnI | CCSGG | 1 cut(s) | 218 |
| BcoDI | GTCTC | 6 cut(s) | 116, 361, 487, 2197, 3011, 3099 |
| BfaI | CTAG | 4 cut(s) | 1317, 2172, 2823, 3218 |
| BfmI | CTRYAG | 3 cut(s) | 19, 2417, 2532 |
| BfoI | RGCGCY | 2 cut(s) | 140, 2416 |
| BfuI | GTATCC | 1 cut(s) | 1440 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 131 |
| BglII | AGATCT | 2 cut(s) | 988, 2737 |
| Bme1390I | CCNGG | 5 cut(s) | 218, 302, 1146, 1821, 2887 |
| Bme18I | GGWCC | 4 cut(s) | 1183, 1898, 1994, 2315 |
| BmeT110I | CYCGRG | 2 cut(s) | 795, 2227 |
| BmgT120I | GGNCC | 5 cut(s) | 1183, 1750, 1898, 1994, 2315 |
| BmiI | GGNNCC | 6 cut(s) | 245, 2316, 2414, 2816, 3081, 3302 |
| BmrFI | CCNGG | 5 cut(s) | 218, 302, 1146, 1821, 2887 |
| BmrI | ACTGGG | 2 cut(s) | 1747, 2996 |
| BmuI | ACTGGG | 2 cut(s) | 1747, 2996 |
| BpiI | GAAGAC | 4 cut(s) | 651, 927, 1470, 2815 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2726 |
| BpuEI | CTTGAG | 2 cut(s) | 155, 709 |
| BpuMI | CCSGG | 1 cut(s) | 218 |
| BsaBI | GATNNNNATC | 1 cut(s) | 474 |
| BsaHI | GRCGYC | 3 cut(s) | 162, 656, 2413 |
| BsaI | GGTCTC | 4 cut(s) | 116, 361, 487, 2197 |
| BsaJI | CCNNGG | 5 cut(s) | 586, 1927, 2254, 2796, 2886 |
| BsaWI | WCCGGW | 1 cut(s) | 520 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 217, 240, 1094, 1599, 2422, 2582 |
| Bse1I | ACTGG | 6 cut(s) | 505, 1328, 1753, 2016, 2818, 2991 |
| Bse21I | CCTNAGG | 3 cut(s) | 612, 1443, 2244 |
| Bse3DI | GCAATG | 4 cut(s) | 295, 775, 1800, 2178 |
| Bse8I | GATNNNNATC | 1 cut(s) | 474 |
| BseBI | CCWGG | 4 cut(s) | 302, 1146, 1821, 2887 |
| BseDI | CCNNGG | 5 cut(s) | 586, 1927, 2254, 2796, 2886 |
| BseGI | GGATG | 9 cut(s) | 11, 204, 623, 1234, 1495, 2591, 2618, 2761, 3061 |
| BseJI | GATNNNNATC | 1 cut(s) | 474 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 217, 240, 1094, 1599, 2422, 2582 |
| BseMI | GCAATG | 4 cut(s) | 295, 775, 1800, 2178 |
| BseNI | ACTGG | 6 cut(s) | 505, 1328, 1753, 2016, 2818, 2991 |
| BseRI | GAGGAG | 2 cut(s) | 2579, 3117 |
| BseX3I | CGGCCG | 1 cut(s) | 238 |
| BseXI | GCAGC | 8 cut(s) | 242, 925, 946, 1134, 2273, 2540, 2869, 2891 |
| BseYI | CCCAGC | 1 cut(s) | 1658 |
| BsgI | GTGCAG | 4 cut(s) | 718, 914, 1377, 2898 |
| Bsh1236I | CGCG | 2 cut(s) | 97, 282 |
| Bsh1285I | CGRYCG | 3 cut(s) | 186, 241, 277 |
| BshFI | GGCC | 7 cut(s) | 226, 240, 1448, 1751, 2406, 2446, 3112 |
| BshNI | GGYRCC | 2 cut(s) | 2412, 3079 |
| BsiEI | CGRYCG | 3 cut(s) | 186, 241, 277 |
| BsiHKAI | GWGCWC | 4 cut(s) | 802, 1193, 1627, 3047 |
| BsiHKCI | CYCGRG | 2 cut(s) | 795, 2227 |
| BsiSI | CCGG | 3 cut(s) | 218, 241, 521 |
| BslFI | GGGAC | 5 cut(s) | 149, 1063, 1812, 2328, 2904 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 217, 240, 1094, 1599, 2422, 2582 |
| BsmAI | GTCTC | 6 cut(s) | 116, 361, 487, 2197, 3011, 3099 |
| BsmFI | GGGAC | 5 cut(s) | 149, 1063, 1812, 2328, 2904 |
| BsmI | GAATGC | 4 cut(s) | 1582, 2109, 2599, 2665 |
| BsnI | GGCC | 7 cut(s) | 226, 240, 1448, 1751, 2406, 2446, 3112 |
| Bso31I | GGTCTC | 4 cut(s) | 116, 361, 487, 2197 |
| BsoBI | CYCGRG | 2 cut(s) | 795, 2227 |
| Bsp1286I | GDGCHC | 5 cut(s) | 248, 802, 1193, 1627, 3047 |
| Bsp1407I | TGTACA | 1 cut(s) | 2399 |
| BspANI | GGCC | 7 cut(s) | 226, 240, 1448, 1751, 2406, 2446, 3112 |
| BspFNI | CGCG | 2 cut(s) | 97, 282 |
| BspHI | TCATGA | 2 cut(s) | 2602, 2746 |
| BspLI | GGNNCC | 6 cut(s) | 245, 2316, 2414, 2816, 3081, 3302 |
| BspMAI | CTGCAG | 1 cut(s) | 2421 |
| BspPI | GGATC | 8 cut(s) | 51, 598, 850, 1939, 2567, 2609, 2964, 2999 |
| BspQI | GCTCTTC | 1 cut(s) | 1198 |
| BspT107I | GGYRCC | 2 cut(s) | 2412, 3079 |
| BspTNI | GGTCTC | 4 cut(s) | 116, 361, 487, 2197 |
| BsrDI | GCAATG | 4 cut(s) | 295, 775, 1800, 2178 |
| BsrGI | TGTACA | 1 cut(s) | 2399 |
| BsrI | ACTGG | 6 cut(s) | 505, 1328, 1753, 2016, 2818, 2991 |
| BssECI | CCNNGG | 5 cut(s) | 586, 1927, 2254, 2796, 2886 |
| BssNI | GRCGYC | 3 cut(s) | 162, 656, 2413 |
| BssSI | CACGAG | 1 cut(s) | 1026 |
| BssT1I | CCWWGG | 3 cut(s) | 586, 2254, 2796 |
| Bst2BI | CACGAG | 1 cut(s) | 1026 |
| Bst2UI | CCWGG | 4 cut(s) | 302, 1146, 1821, 2887 |
| Bst4CI | ACNGT | 8 cut(s) | 650, 920, 950, 1336, 1506, 2734, 2814, 3026 |
| Bst6I | CTCTTC | 6 cut(s) | 47, 1198, 2842, 3180, 3204, 3255 |
| BstACI | GRCGYC | 3 cut(s) | 162, 656, 2413 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1488, 1985 |
| BstAUI | TGTACA | 1 cut(s) | 2399 |
| BstC8I | GCNNGC | 6 cut(s) | 1342, 2417, 3084, 3114, 3126, 3138 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2420 |
| BstF5I | GGATG | 9 cut(s) | 11, 204, 623, 1234, 1495, 2591, 2618, 2761, 3061 |
| BstFNI | CGCG | 2 cut(s) | 97, 282 |
| BstH2I | RGCGCY | 2 cut(s) | 140, 2416 |
| BstHHI | GCGC | 2 cut(s) | 139, 2415 |
| BstMAI | GTCTC | 6 cut(s) | 116, 361, 487, 2197, 3011, 3099 |
| BstMCI | CGRYCG | 3 cut(s) | 186, 241, 277 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 131, 252, 641, 650, 1488, 1985, 2258, 2412, 2452 |
| BstNI | CCWGG | 4 cut(s) | 302, 1146, 1821, 2887 |
| BstNSI | RCATGY | 2 cut(s) | 2306, 2360 |
| BstSCI | CCNGG | 5 cut(s) | 216, 300, 1144, 1819, 2885 |
| BstSFI | CTRYAG | 3 cut(s) | 19, 2417, 2532 |
| BstUI | CGCG | 2 cut(s) | 97, 282 |
| BstV1I | GCAGC | 8 cut(s) | 242, 925, 946, 1134, 2273, 2540, 2869, 2891 |
| BstV2I | GAAGAC | 4 cut(s) | 651, 927, 1470, 2815 |
| BstX2I | RGATCY | 5 cut(s) | 56, 590, 988, 2614, 2737 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1572 |
| BstYI | RGATCY | 5 cut(s) | 56, 590, 988, 2614, 2737 |
| BstZI | CGGCCG | 1 cut(s) | 238 |
| Bsu36I | CCTNAGG | 3 cut(s) | 612, 1443, 2244 |
| BsuI | GTATCC | 1 cut(s) | 1440 |
| BsuRI | GGCC | 7 cut(s) | 226, 240, 1448, 1751, 2406, 2446, 3112 |
| BtgZI | GCGATG | 1 cut(s) | 483 |
| BtsCI | GGATG | 9 cut(s) | 11, 204, 623, 1234, 1495, 2591, 2618, 2761, 3061 |
| BtsI | GCAGTG | 2 cut(s) | 1577, 2109 |
| BtsIMutI | CAGTG | 9 cut(s) | 655, 912, 916, 955, 1374, 1577, 1760, 2109, 2881 |
| Cac8I | GCNNGC | 6 cut(s) | 1342, 2417, 3084, 3114, 3126, 3138 |
| CciI | TCATGA | 2 cut(s) | 2602, 2746 |
| CfoI | GCGC | 2 cut(s) | 139, 2415 |
| Cfr13I | GGNCC | 5 cut(s) | 1183, 1750, 1898, 1994, 2315 |
| CseI | GACGC | 2 cut(s) | 271, 645 |
| Csp6I | GTAC | 5 cut(s) | 1074, 1739, 1817, 2288, 2400 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 203, 238 |
| CviQI | GTAC | 5 cut(s) | 1074, 1739, 1817, 2288, 2400 |
| DinI | GGCGCC | 1 cut(s) | 2414 |
| DraI | TTTAAA | 1 cut(s) | 2919 |
| DraIII | CACNNNGTG | 1 cut(s) | 2669 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 281 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 281 |
| EaeI | YGGCCR | 1 cut(s) | 238 |
| EagI | CGGCCG | 1 cut(s) | 238 |
| Eam1104I | CTCTTC | 6 cut(s) | 47, 1198, 2842, 3180, 3204, 3255 |
| EarI | CTCTTC | 6 cut(s) | 47, 1198, 2842, 3180, 3204, 3255 |
| EciI | GGCGGA | 2 cut(s) | 197, 3212 |
| Ecl136II | GAGCTC | 2 cut(s) | 800, 1191 |
| EclXI | CGGCCG | 1 cut(s) | 238 |
| Eco130I | CCWWGG | 3 cut(s) | 586, 2254, 2796 |
| Eco147I | AGGCCT | 1 cut(s) | 2406 |
| Eco24I | GRGCYC | 3 cut(s) | 248, 802, 1193 |
| Eco31I | GGTCTC | 4 cut(s) | 116, 361, 487, 2197 |
| Eco47I | GGWCC | 4 cut(s) | 1183, 1898, 1994, 2315 |
| Eco52I | CGGCCG | 1 cut(s) | 238 |
| Eco53kI | GAGCTC | 2 cut(s) | 800, 1191 |
| Eco57I | CTGAAG | 4 cut(s) | 888, 921, 2024, 2857 |
| Eco81I | CCTNAGG | 3 cut(s) | 612, 1443, 2244 |
| Eco88I | CYCGRG | 2 cut(s) | 795, 2227 |
| EcoICRI | GAGCTC | 2 cut(s) | 800, 1191 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2420 |
| EcoRII | CCWGG | 4 cut(s) | 300, 1144, 1819, 2885 |
| EcoT14I | CCWWGG | 3 cut(s) | 586, 2254, 2796 |
| EcoT22I | ATGCAT | 1 cut(s) | 2793 |
| EcoT38I | GRGCYC | 3 cut(s) | 248, 802, 1193 |
| EgeI | GGCGCC | 1 cut(s) | 2414 |
| EheI | GGCGCC | 1 cut(s) | 2414 |
| ErhI | CCWWGG | 3 cut(s) | 586, 2254, 2796 |
| FaqI | GGGAC | 5 cut(s) | 149, 1063, 1812, 2328, 2904 |
| FauI | CCCGC | 3 cut(s) | 257, 2095, 2852 |
| FblI | GTMKAC | 2 cut(s) | 292, 1138 |
| FokI | GGATG | 8 cut(s) | 191, 630, 1221, 1482, 2598, 2605, 2748, 3068 |
| FriOI | GRGCYC | 3 cut(s) | 248, 802, 1193 |
| FspBI | CTAG | 4 cut(s) | 1317, 2172, 2823, 3218 |
| GlaI | GCGC | 2 cut(s) | 138, 2414 |
| GsaI | CCCAGC | 1 cut(s) | 1662 |
| HaeII | RGCGCY | 2 cut(s) | 140, 2416 |
| HaeIII | GGCC | 7 cut(s) | 226, 240, 1448, 1751, 2406, 2446, 3112 |
| HapII | CCGG | 3 cut(s) | 218, 241, 521 |
| HgaI | GACGC | 2 cut(s) | 271, 645 |
| HhaI | GCGC | 2 cut(s) | 139, 2415 |
| Hin1I | GRCGYC | 3 cut(s) | 162, 656, 2413 |
| Hin6I | GCGC | 2 cut(s) | 137, 2413 |
| HinP1I | GCGC | 2 cut(s) | 137, 2413 |
| HincII | GTYRAC | 2 cut(s) | 293, 900 |
| HindII | GTYRAC | 2 cut(s) | 293, 900 |
| HpaII | CCGG | 3 cut(s) | 218, 241, 521 |
| HphI | GGTGA | 4 cut(s) | 461, 989, 1472, 2992 |
| Hpy166II | GTNNAC | 5 cut(s) | 293, 900, 1139, 1275, 2400 |
| Hpy8I | GTNNAC | 5 cut(s) | 293, 900, 1139, 1275, 2400 |
| Hpy99I | CGWCG | 5 cut(s) | 133, 164, 181, 287, 1739 |
| HpyAV | CCTTC | 4 cut(s) | 1026, 2691, 2928, 3271 |
| HpyCH4III | ACNGT | 8 cut(s) | 650, 920, 950, 1336, 1506, 2734, 2814, 3026 |
| HpyCH4IV | ACGT | 6 cut(s) | 162, 748, 1271, 1737, 2665, 2893 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 131, 252, 641, 650, 1488, 1985, 2258, 2412, 2452 |
| HpySE526I | ACGT | 6 cut(s) | 162, 748, 1271, 1737, 2665, 2893 |
| Hsp92I | GRCGYC | 3 cut(s) | 162, 656, 2413 |
| HspAI | GCGC | 2 cut(s) | 137, 2413 |
| KasI | GGCGCC | 1 cut(s) | 2412 |
| LguI | GCTCTTC | 1 cut(s) | 1198 |
| LmnI | GCTCC | 7 cut(s) | 77, 243, 347, 1630, 2258, 3091, 3300 |
| Lsp1109I | GCAGC | 8 cut(s) | 242, 925, 946, 1134, 2273, 2540, 2869, 2891 |
| MaeI | CTAG | 4 cut(s) | 1317, 2172, 2823, 3218 |
| MaeII | ACGT | 6 cut(s) | 162, 748, 1271, 1737, 2665, 2893 |
| MaeIII | GTNAC | 7 cut(s) | 790, 950, 1280, 1330, 1582, 2307, 2862 |
| MfeI | CAATTG | 3 cut(s) | 2058, 2388, 2487 |
| MflI | RGATCY | 5 cut(s) | 56, 590, 988, 2614, 2737 |
| MhlI | GDGCHC | 5 cut(s) | 248, 802, 1193, 1627, 3047 |
| Mly113I | GGCGCC | 1 cut(s) | 2413 |
| MlyI | GAGTC | 7 cut(s) | 23, 298, 385, 787, 1673, 2453, 2576 |
| MmeI | TCCRAC | 4 cut(s) | 359, 1343, 2570, 2663 |
| Mph1103I | ATGCAT | 1 cut(s) | 2793 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1828, 3213 |
| MseI | TTAA | 4 cut(s) | 45, 1107, 2066, 2918 |
| MslI | CAYNNNNRTG | 2 cut(s) | 2114, 2766 |
| MspA1I | CMGCKG | 2 cut(s) | 255, 2882 |
| MspI | CCGG | 3 cut(s) | 218, 241, 521 |
| MspR9I | CCNGG | 5 cut(s) | 218, 302, 1146, 1821, 2887 |
| MunI | CAATTG | 3 cut(s) | 2058, 2388, 2487 |
| Mva1269I | GAATGC | 4 cut(s) | 1582, 2109, 2599, 2665 |
| MvaI | CCWGG | 4 cut(s) | 302, 1146, 1821, 2887 |
| MvnI | CGCG | 2 cut(s) | 97, 282 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 131, 252, 641, 650, 1488, 1985, 2258, 2412, 2452 |
| NarI | GGCGCC | 1 cut(s) | 2413 |
| NciI | CCSGG | 1 cut(s) | 218 |
| NlaIV | GGNNCC | 6 cut(s) | 245, 2316, 2414, 2816, 3081, 3302 |
| NmeAIII | GCCGAG | 1 cut(s) | 93 |
| NmuCI | GTSAC | 4 cut(s) | 790, 950, 1280, 2862 |
| NsiI | ATGCAT | 1 cut(s) | 2793 |
| NspI | RCATGY | 2 cut(s) | 2306, 2360 |
| PaeR7I | CTCGAG | 1 cut(s) | 795 |
| PagI | TCATGA | 2 cut(s) | 2602, 2746 |
| PceI | AGGCCT | 1 cut(s) | 2406 |
| PciI | ACATGT | 2 cut(s) | 2302, 2356 |
| PciSI | GCTCTTC | 1 cut(s) | 1198 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 270, 709 |
| PctI | GAATGC | 4 cut(s) | 1582, 2109, 2599, 2665 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1828, 3213 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1599 |
| PleI | GAGTC | 7 cut(s) | 23, 297, 384, 787, 1673, 2453, 2575 |
| PluTI | GGCGCC | 1 cut(s) | 2416 |
| PpsI | GAGTC | 7 cut(s) | 23, 297, 384, 787, 1673, 2453, 2575 |
| PscI | ACATGT | 2 cut(s) | 2302, 2356 |
| Psp124BI | GAGCTC | 2 cut(s) | 802, 1193 |
| Psp1406I | AACGTT | 1 cut(s) | 1271 |
| Psp6I | CCWGG | 4 cut(s) | 300, 1144, 1819, 2885 |
| PspFI | CCCAGC | 1 cut(s) | 1658 |
| PspGI | CCWGG | 4 cut(s) | 300, 1144, 1819, 2885 |
| PspN4I | GGNNCC | 6 cut(s) | 245, 2316, 2414, 2816, 3081, 3302 |
| PspPI | GGNCC | 5 cut(s) | 1183, 1750, 1898, 1994, 2315 |
| PspXI | VCTCGAGB | 1 cut(s) | 795 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1421, 1453 |
| PstI | CTGCAG | 1 cut(s) | 2421 |
| PsuI | RGATCY | 5 cut(s) | 56, 590, 988, 2614, 2737 |
| PvuII | CAGCTG | 1 cut(s) | 2882 |
| RsaI | GTAC | 5 cut(s) | 1075, 1740, 1818, 2289, 2401 |
| RsaNI | GTAC | 5 cut(s) | 1074, 1739, 1817, 2288, 2400 |
| RseI | CAYNNNNRTG | 2 cut(s) | 2114, 2766 |
| SacI | GAGCTC | 2 cut(s) | 802, 1193 |
| SalI | GTCGAC | 1 cut(s) | 291 |
| SapI | GCTCTTC | 1 cut(s) | 1198 |
| SaqAI | TTAA | 4 cut(s) | 45, 1107, 2066, 2918 |
| Sau96I | GGNCC | 5 cut(s) | 1183, 1750, 1898, 1994, 2315 |
| SbfI | CCTGCAGG | 1 cut(s) | 2421 |
| SchI | GAGTC | 7 cut(s) | 23, 298, 385, 787, 1673, 2453, 2576 |
| ScrFI | CCNGG | 5 cut(s) | 218, 302, 1146, 1821, 2887 |
| SdaI | CCTGCAGG | 1 cut(s) | 2421 |
| SduI | GDGCHC | 5 cut(s) | 248, 802, 1193, 1627, 3047 |
| SfcI | CTRYAG | 3 cut(s) | 19, 2417, 2532 |
| SfoI | GGCGCC | 1 cut(s) | 2414 |
| Sfr274I | CTCGAG | 1 cut(s) | 795 |
| SinI | GGWCC | 4 cut(s) | 1183, 1898, 1994, 2315 |
| SlaI | CTCGAG | 1 cut(s) | 795 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 2114, 2766 |
| SmlI | CTYRAG | 3 cut(s) | 170, 688, 795 |
| SmoI | CTYRAG | 3 cut(s) | 170, 688, 795 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 2421 |
| SseBI | AGGCCT | 1 cut(s) | 2406 |
| SspDI | GGCGCC | 1 cut(s) | 2412 |
| SspI | AATATT | 3 cut(s) | 758, 1260, 1531 |
| SspMI | CTAG | 4 cut(s) | 1317, 2172, 2823, 3218 |
| SstI | GAGCTC | 2 cut(s) | 802, 1193 |
| StuI | AGGCCT | 1 cut(s) | 2406 |
| StyD4I | CCNGG | 5 cut(s) | 216, 300, 1144, 1819, 2885 |
| StyI | CCWWGG | 3 cut(s) | 586, 2254, 2796 |
| TaaI | ACNGT | 8 cut(s) | 650, 920, 950, 1336, 1506, 2734, 2814, 3026 |
| TaiI | ACGT | 6 cut(s) | 165, 751, 1274, 1740, 2668, 2896 |
| TaqI | TCGA | 5 cut(s) | 144, 159, 292, 359, 796 |
| TaqII | GACCGA | 2 cut(s) | 200, 1748 |
| TatI | WGTACW | 1 cut(s) | 2399 |
| TauI | GCSGC | 6 cut(s) | 97, 137, 255, 282, 656, 2387 |
| Tru1I | TTAA | 4 cut(s) | 45, 1107, 2066, 2918 |
| Tru9I | TTAA | 4 cut(s) | 45, 1107, 2066, 2918 |
| TscAI | CASTG | 9 cut(s) | 655, 912, 923, 955, 1381, 1577, 1760, 2109, 2881 |
| TseFI | GTSAC | 4 cut(s) | 790, 950, 1280, 2862 |
| TseI | GCWGC | 8 cut(s) | 255, 913, 959, 1122, 2261, 2528, 2879, 2882 |
| Tsp45I | GTSAC | 4 cut(s) | 790, 950, 1280, 2862 |
| TspGWI | ACGGA | 3 cut(s) | 850, 1091, 3260 |
| TspRI | CASTG | 9 cut(s) | 655, 912, 923, 955, 1381, 1577, 1760, 2109, 2881 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1599 |
| VpaK11BI | GGWCC | 4 cut(s) | 1183, 1898, 1994, 2315 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2420 |
| XapI | RAATTY | 7 cut(s) | 705, 1042, 1406, 1555, 2321, 2507, 2519 |
| XbaI | TCTAGA | 1 cut(s) | 3217 |
| XceI | RCATGY | 2 cut(s) | 2306, 2360 |
| XhoI | CTCGAG | 1 cut(s) | 795 |
| XmiI | GTMKAC | 2 cut(s) | 292, 1138 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1828, 3213 |
| XspI | CTAG | 4 cut(s) | 1317, 2172, 2823, 3218 |
| ZraI | GACGTC | 1 cut(s) | 163 |
| Zsp2I | ATGCAT | 1 cut(s) | 2793 |