Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0006613

Physical Location & Seq

Genomic Coordinates Forward (+)

8028461 .. 8031862

Gene Structure 3402 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG095600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1407 bp

ATGAAATTCCTCGGATCAGTTGAAGCATCTGTGGTTGGTCTAAGCTACCTCTTTCACAATGCAACAGATGCAAATGGTGCAAAGCTGAAGAAACTGGCTTCATTTCTCAGGAAATCTTGTGAAAATGCGAAAGATTTATCAATTATCTTAACAAGAAACACAAACATACCCGCAGATGCAAATGCAGTGAGCATTCATGTGTCAAATCCTATTGAGTTCTCTGAGGGAGATCGTGTTCAACTTGGGTTTTTGCCTAGAAACATTGCAAAATGGGTCTCTCCACTCTGGGATATTGGAATGTTTAGATTCTCTGGTTATGTCTGTCCTAAGGAAGCCCTTGGAGCAGCTTTAGGAGGAAACAACAAGAAAGTACGGCTGATACTACATGTGTTAGAGGGACCAAAATTTCAAGATATATCAAAGATGATGCAACCTCAACATGTTATTGCATTATGCTCTTTGGTTGCGGCAATTGAAAGGTGTACAGGCCTCTGGCGCCTGCAGGAGGTTTTAGGTCAATATAAATGGCCTGAATCGCTTGACTCTGAGTTTGTTTATGGTGCATCTTCAATTGGGTCAATCAATGCAAAATTTTTAGCCGAATTTTCAGCAGCTGCAGGAAAGAAATCATTTCAGTTTGATTCTGAGGAGTCTGATCCTGAGTGGGGATGTTGGAATGCTCGTCATGAATCAAAAGATCCATCCATTAGAATCATTTTTCCAACCATTGAAAGAGTGAAGAATGCACGTTGTGGAATCTTTCCTTCAAAGCGTGTTCTTTGCTTCTCTGAGAAAACATGGCAAAGGCTGAGGACAGTAGATATACTTCATGATGCAATTCCTTATCCTTGTGATAGAGTAGGACATCCAATGCATACCAAGGTGGCAAGAAGACGGTTCCAGTCTAGGACAGATGCATCTTCATGTGGTTGGGTTTATTGCGGGTCACATAACTTCAGTGCAGCTGCCTGGGGACGTTCAATTTCTACTCCATCTGGTTTAAAAACGAATGGAAGAGGGAATGACAATTCTTCTCTGGATCAGATGCTTCATATTTGCAATTATGAACTTGGGATCATTTTCACCTTTCCCCAAACAGAGACAGACAGTAGTGCTTATCAAAAGAGCACAAACTTGGATGATATTGTTTTGCCATTTGTGGTGCCTGCTCCAAAATACAAGCGAGGAGACAGGCCAGCAACAACGCTGGCTATGTGGCAGGCACTATCTGAACTTTCTGAAAAAGAGAGAGAAAAACATAGACAAGAAGAGATGGAGGCGGAAGCTATGGAAGAGATTCTAGATGAAGATGAAGTTGTTGAGGCAACGGATTATGTTGATAAAGAGAAAGAAGATGAGAAGGCTTACGCTGAGATTCTTTGGAGCCAATCATCTCAGAGCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA HIRAN Tyr-DNA_phospho

Protein Analysis

468

Amino Acids

52.51

Weight (kDa)

6.17

Isoelectric Point (pI)

51.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HIRAN	PF08797	5 - 110	5.1e-10	HIRAN domain
Tyr-DNA_phospho	PF06087	161 - 394	3e-23	Tyrosyl-DNA phosphodiesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07400 AT5G07400 AT5G07400 AT5G07400 AT5G07400 AT5G07400 AT5G07400 AT5G07400
fragaria_vesca	FvH4_5g10030
malus_domestica	MD06G1128300.v1.1 MD09G1063600.v1.1
prunus_persica	Prupe.5G138100_v2.0.a1
pyrus_communis	pycom06g11850
rosa_chinensis	RchiOBHm_Chr7g0188231
rosa_laevigata	RLG00000002473 RLG00000004716
rosa_multiflora	Rmu_sc0008750.1_g000014
rosa_roxburghii	Rroxscaffold_3G00266590
rosa_rugosa	Rorug06G0489000 Rorug06G0489300
rosa_samantha	Rh7AG093600 Rh7BG095000 Rh7CG095400 Rh7DG095500 Rh7DG095600
rosa_wichuraiana	Rw7G008060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	495, 1162
AciI	CCGC	4 cut(s)	171, 467, 942, 1280
AclWI	GGATC	5 cut(s)	22, 650, 692, 1047, 1082
AcsI	RAATTY	4 cut(s)	5, 404, 590, 602
AcuI	CTGAAG	2 cut(s)	107, 940
AcyI	GRCGYC	1 cut(s)	496
AdeI	CACNNNGTG	1 cut(s)	752
AfaI	GTAC	2 cut(s)	372, 484
AfiI	CCNNNNNNNGG	2 cut(s)	505, 665
AflIII	ACRYGT	2 cut(s)	385, 439
AgsI	TTSAA	8 cut(s)	23, 239, 410, 476, 570, 731, 768, 981
AjnI	CCWGG	1 cut(s)	968
AloI	GAACNNNNNNTCC	2 cut(s)	219, 251
AluBI	AGCT	7 cut(s)	45, 85, 347, 614, 965, 1286, 1401
AluI	AGCT	7 cut(s)	45, 85, 347, 614, 965, 1286, 1401
Alw21I	GWGCWC	1 cut(s)	1130
Alw26I	GTCTC	3 cut(s)	280, 1094, 1182
AlwI	GGATC	5 cut(s)	22, 650, 692, 1047, 1082
AlwNI	CAGNNNCTG	1 cut(s)	614
AoxI	GGCC	3 cut(s)	487, 527, 1193
ApeKI	GCWGC	5 cut(s)	344, 611, 614, 962, 965
ApoI	RAATTY	4 cut(s)	5, 404, 590, 602
ArsI	GACNNNNNNTTYG	2 cut(s)	533, 565
Asp700I	GAANNNNTTC	1 cut(s)	1296
AspLEI	GCGC	1 cut(s)	498
AspS9I	GGNCC	1 cut(s)	398
AsuHPI	GGTGA	1 cut(s)	1075
AvaII	GGWCC	1 cut(s)	398
AxyI	CCTNAGG	1 cut(s)	327
BanI	GGYRCC	2 cut(s)	495, 1162
BarI	GAAGNNNNNNTAC	2 cut(s)	810, 842
BbsI	GAAGAC	1 cut(s)	898
Bbv12I	GWGCWC	1 cut(s)	1130
BbvCI	CCTCAGC	1 cut(s)	809
BbvI	GCAGC	5 cut(s)	356, 601, 623, 952, 974
BccI	CCATC	3 cut(s)	709, 1000, 1267
BceAI	ACGGC	1 cut(s)	389
BciT130I	CCWGG	1 cut(s)	970
BcoDI	GTCTC	3 cut(s)	280, 1094, 1182
BfaI	CTAG	3 cut(s)	255, 906, 1301
BfmI	CTRYAG	2 cut(s)	500, 615
BfoI	RGCGCY	1 cut(s)	499
BisI	GCNGC	6 cut(s)	345, 468, 612, 615, 963, 966
BlsI	GCNGC	6 cut(s)	346, 469, 613, 616, 964, 967
Bme1390I	CCNGG	1 cut(s)	970
Bme18I	GGWCC	1 cut(s)	398
BmgT120I	GGNCC	1 cut(s)	398
BmiI	GGNNCC	5 cut(s)	399, 497, 899, 1164, 1385
BmrFI	CCNGG	1 cut(s)	970
BmsI	GCATC	9 cut(s)	35, 58, 166, 417, 572, 823, 904, 926, 1035
BpiI	GAAGAC	1 cut(s)	898
Bpu10I	CCTNAGC	1 cut(s)	809
BsaHI	GRCGYC	1 cut(s)	496
BsaI	GGTCTC	1 cut(s)	280
BsaJI	CCNNGG	4 cut(s)	10, 337, 879, 969
BsaXI	ACNNNNNCTCC	2 cut(s)	219, 249
Bsc4I	CCNNNNNNNGG	2 cut(s)	505, 665
Bse1I	ACTGG	2 cut(s)	99, 901
Bse21I	CCTNAGG	1 cut(s)	327
Bse3DI	GCAATG	1 cut(s)	261
BseBI	CCWGG	1 cut(s)	970
BseDI	CCNNGG	4 cut(s)	10, 337, 879, 969
BseGI	GGATG	4 cut(s)	674, 701, 865, 1144
BseLI	CCNNNNNNNGG	2 cut(s)	505, 665
BseMI	GCAATG	1 cut(s)	261
BseMII	CTCAG	8 cut(s)	121, 213, 537, 636, 651, 780, 800, 1362
BseNI	ACTGG	2 cut(s)	99, 901
BseRI	GAGGAG	2 cut(s)	662, 1200
BseXI	GCAGC	5 cut(s)	356, 601, 623, 952, 974
BsgI	GTGCAG	1 cut(s)	981
BshFI	GGCC	3 cut(s)	489, 529, 1195
BshNI	GGYRCC	2 cut(s)	495, 1162
BsiHKAI	GWGCWC	1 cut(s)	1130
BslFI	GGGAC	2 cut(s)	411, 987
BslI	CCNNNNNNNGG	2 cut(s)	505, 665
BsmAI	GTCTC	3 cut(s)	280, 1094, 1182
BsmFI	GGGAC	2 cut(s)	411, 987
BsmI	GAATGC	3 cut(s)	192, 682, 748
BsnI	GGCC	3 cut(s)	489, 529, 1195
Bso31I	GGTCTC	1 cut(s)	280
Bsp1286I	GDGCHC	1 cut(s)	1130
Bsp1407I	TGTACA	1 cut(s)	482
Bsp143I	GATC	6 cut(s)	14, 229, 655, 697, 1039, 1074
BspACI	CCGC	4 cut(s)	171, 467, 942, 1280
BspANI	GGCC	3 cut(s)	489, 529, 1195
BspCNI	CTCAG	8 cut(s)	120, 214, 538, 637, 652, 781, 801, 1363
BspHI	TCATGA	2 cut(s)	685, 829
BspLI	GGNNCC	5 cut(s)	399, 497, 899, 1164, 1385
BspMAI	CTGCAG	2 cut(s)	504, 619
BspPI	GGATC	5 cut(s)	22, 650, 692, 1047, 1082
BspT107I	GGYRCC	2 cut(s)	495, 1162
BspTNI	GGTCTC	1 cut(s)	280
BsrDI	GCAATG	1 cut(s)	261
BsrGI	TGTACA	1 cut(s)	482
BsrI	ACTGG	2 cut(s)	99, 901
BssECI	CCNNGG	4 cut(s)	10, 337, 879, 969
BssMI	GATC	6 cut(s)	14, 229, 655, 697, 1039, 1074
BssNI	GRCGYC	1 cut(s)	496
BssT1I	CCWWGG	2 cut(s)	337, 879
Bst2UI	CCWGG	1 cut(s)	970
Bst4CI	ACNGT	3 cut(s)	817, 897, 1109
Bst6I	CTCTTC	3 cut(s)	1009, 1263, 1287
BstACI	GRCGYC	1 cut(s)	496
BstAPI	GCANNNNNTGC	2 cut(s)	68, 77
BstAUI	TGTACA	1 cut(s)	482
BstC8I	GCNNGC	5 cut(s)	500, 1167, 1197, 1209, 1221
BstENI	CCTNNNNNAGG	1 cut(s)	503
BstF5I	GGATG	4 cut(s)	674, 701, 865, 1144
BstH2I	RGCGCY	1 cut(s)	499
BstHHI	GCGC	1 cut(s)	498
BstKTI	GATC	6 cut(s)	17, 232, 658, 700, 1042, 1077
BstMAI	GTCTC	3 cut(s)	280, 1094, 1182
BstMBI	GATC	6 cut(s)	14, 229, 655, 697, 1039, 1074
BstMWI	GCNNNNNNNGC	5 cut(s)	68, 77, 341, 495, 535
BstNI	CCWGG	1 cut(s)	970
BstNSI	RCATGY	2 cut(s)	389, 443
BstSCI	CCNGG	1 cut(s)	968
BstSFI	CTRYAG	2 cut(s)	500, 615
BstV1I	GCAGC	5 cut(s)	356, 601, 623, 952, 974
BstV2I	GAAGAC	1 cut(s)	898
BstX2I	RGATCY	1 cut(s)	697
BstYI	RGATCY	1 cut(s)	697
Bsu36I	CCTNAGG	1 cut(s)	327
BsuRI	GGCC	3 cut(s)	489, 529, 1195
BtsCI	GGATG	4 cut(s)	674, 701, 865, 1144
BtsI	GCAGTG	1 cut(s)	192
BtsIMutI	CAGTG	2 cut(s)	192, 964
Cac8I	GCNNGC	5 cut(s)	500, 1167, 1197, 1209, 1221
CaiI	CAGNNNCTG	1 cut(s)	614
CciI	TCATGA	2 cut(s)	685, 829
CfoI	GCGC	1 cut(s)	498
Cfr13I	GGNCC	1 cut(s)	398
Csp6I	GTAC	2 cut(s)	371, 483
CviAII	CATG	7 cut(s)	197, 386, 440, 686, 798, 830, 924
CviQI	GTAC	2 cut(s)	371, 483
DinI	GGCGCC	1 cut(s)	497
DpnI	GATC	6 cut(s)	16, 231, 657, 699, 1041, 1076
DpnII	GATC	6 cut(s)	14, 229, 655, 697, 1039, 1074
DraI	TTTAAA	1 cut(s)	1002
DraIII	CACNNNGTG	1 cut(s)	752
Eam1104I	CTCTTC	3 cut(s)	1009, 1263, 1287
EarI	CTCTTC	3 cut(s)	1009, 1263, 1287
EciI	GGCGGA	1 cut(s)	1295
Eco130I	CCWWGG	2 cut(s)	337, 879
Eco147I	AGGCCT	1 cut(s)	489
Eco31I	GGTCTC	1 cut(s)	280
Eco47I	GGWCC	1 cut(s)	398
Eco57I	CTGAAG	2 cut(s)	107, 940
Eco81I	CCTNAGG	1 cut(s)	327
EcoNI	CCTNNNNNAGG	1 cut(s)	503
EcoRII	CCWGG	1 cut(s)	968
EcoT14I	CCWWGG	2 cut(s)	337, 879
EcoT22I	ATGCAT	2 cut(s)	876, 919
EgeI	GGCGCC	1 cut(s)	497
EheI	GGCGCC	1 cut(s)	497
ErhI	CCWWGG	2 cut(s)	337, 879
FaeI	CATG	7 cut(s)	200, 389, 443, 689, 801, 833, 927
FaqI	GGGAC	2 cut(s)	411, 987
FatI	CATG	7 cut(s)	196, 385, 439, 685, 797, 829, 923
FauI	CCCGC	2 cut(s)	178, 935
Fnu4HI	GCNGC	6 cut(s)	345, 468, 612, 615, 963, 966
FokI	GGATG	4 cut(s)	681, 688, 852, 1151
Fsp4HI	GCNGC	6 cut(s)	345, 468, 612, 615, 963, 966
FspBI	CTAG	3 cut(s)	255, 906, 1301
GlaI	GCGC	1 cut(s)	497
GluI	GCNGC	6 cut(s)	345, 468, 612, 615, 963, 966
HaeII	RGCGCY	1 cut(s)	499
HaeIII	GGCC	3 cut(s)	489, 529, 1195
HhaI	GCGC	1 cut(s)	498
Hin1I	GRCGYC	1 cut(s)	496
Hin1II	CATG	7 cut(s)	200, 389, 443, 689, 801, 833, 927
Hin6I	GCGC	1 cut(s)	496
HinP1I	GCGC	1 cut(s)	496
HphI	GGTGA	1 cut(s)	1075
Hpy166II	GTNNAC	1 cut(s)	483
Hpy188III	TCNNGA	7 cut(s)	109, 410, 659, 686, 830, 1037, 1301
Hpy8I	GTNNAC	1 cut(s)	483
HpyAV	CCTTC	2 cut(s)	774, 1354
HpyCH4III	ACNGT	3 cut(s)	817, 897, 1109
HpyCH4IV	ACGT	2 cut(s)	748, 976
HpyF10VI	GCNNNNNNNGC	5 cut(s)	68, 77, 341, 495, 535
HpySE526I	ACGT	2 cut(s)	748, 976
Hsp92I	GRCGYC	1 cut(s)	496
Hsp92II	CATG	7 cut(s)	200, 389, 443, 689, 801, 833, 927
HspAI	GCGC	1 cut(s)	496
KasI	GGCGCC	1 cut(s)	495
Kzo9I	GATC	6 cut(s)	14, 229, 655, 697, 1039, 1074
LmnI	GCTCC	3 cut(s)	341, 1174, 1383
Lsp1109I	GCAGC	5 cut(s)	356, 601, 623, 952, 974
LweI	GCATC	9 cut(s)	35, 58, 166, 417, 572, 823, 904, 926, 1035
MaeI	CTAG	3 cut(s)	255, 906, 1301
MaeII	ACGT	2 cut(s)	748, 976
MaeIII	GTNAC	1 cut(s)	945
MalI	GATC	6 cut(s)	16, 231, 657, 699, 1041, 1076
MboI	GATC	6 cut(s)	14, 229, 655, 697, 1039, 1074
MfeI	CAATTG	2 cut(s)	471, 570
MflI	RGATCY	1 cut(s)	697
MhlI	GDGCHC	1 cut(s)	1130
Mly113I	GGCGCC	1 cut(s)	496
MlyI	GAGTC	2 cut(s)	536, 659
MmeI	TCCRAC	2 cut(s)	653, 746
Mph1103I	ATGCAT	2 cut(s)	876, 919
MroXI	GAANNNNTTC	1 cut(s)	1296
MseI	TTAA	2 cut(s)	149, 1001
MslI	CAYNNNNRTG	2 cut(s)	197, 922
MspA1I	CMGCKG	2 cut(s)	614, 965
MspR9I	CCNGG	1 cut(s)	970
MunI	CAATTG	2 cut(s)	471, 570
Mva1269I	GAATGC	3 cut(s)	192, 682, 748
MvaI	CCWGG	1 cut(s)	970
MwoI	GCNNNNNNNGC	5 cut(s)	68, 77, 341, 495, 535
NarI	GGCGCC	1 cut(s)	496
NdeII	GATC	6 cut(s)	14, 229, 655, 697, 1039, 1074
NlaIII	CATG	7 cut(s)	200, 389, 443, 689, 801, 833, 927
NlaIV	GGNNCC	5 cut(s)	399, 497, 899, 1164, 1385
NmuCI	GTSAC	1 cut(s)	945
NsiI	ATGCAT	2 cut(s)	876, 919
NspI	RCATGY	2 cut(s)	389, 443
PagI	TCATGA	2 cut(s)	685, 829
PceI	AGGCCT	1 cut(s)	489
PciI	ACATGT	2 cut(s)	385, 439
PctI	GAATGC	3 cut(s)	192, 682, 748
PdmI	GAANNNNTTC	1 cut(s)	1296
PfeI	GAWTC	8 cut(s)	306, 533, 641, 689, 711, 756, 1297, 1375
PkrI	GCNGC	6 cut(s)	346, 469, 613, 616, 964, 967
PleI	GAGTC	2 cut(s)	536, 658
PluTI	GGCGCC	1 cut(s)	499
PpsI	GAGTC	2 cut(s)	536, 658
PscI	ACATGT	2 cut(s)	385, 439
Psp6I	CCWGG	1 cut(s)	968
PspGI	CCWGG	1 cut(s)	968
PspN4I	GGNNCC	5 cut(s)	399, 497, 899, 1164, 1385
PspPI	GGNCC	1 cut(s)	398
PstI	CTGCAG	2 cut(s)	504, 619
PstNI	CAGNNNCTG	1 cut(s)	614
PsuI	RGATCY	1 cut(s)	697
PvuII	CAGCTG	2 cut(s)	614, 965
RsaI	GTAC	2 cut(s)	372, 484
RsaNI	GTAC	2 cut(s)	371, 483
RseI	CAYNNNNRTG	2 cut(s)	197, 922
SaqAI	TTAA	2 cut(s)	149, 1001
SatI	GCNGC	6 cut(s)	345, 468, 612, 615, 963, 966
Sau3AI	GATC	6 cut(s)	14, 229, 655, 697, 1039, 1074
Sau96I	GGNCC	1 cut(s)	398
SbfI	CCTGCAGG	1 cut(s)	504
SchI	GAGTC	2 cut(s)	536, 659
ScrFI	CCNGG	1 cut(s)	970
SdaI	CCTGCAGG	1 cut(s)	504
SduI	GDGCHC	1 cut(s)	1130
SfaNI	GCATC	9 cut(s)	35, 58, 166, 417, 572, 823, 904, 926, 1035
SfcI	CTRYAG	2 cut(s)	500, 615
SfoI	GGCGCC	1 cut(s)	497
SinI	GGWCC	1 cut(s)	398
SmiMI	CAYNNNNRTG	2 cut(s)	197, 922
Sse8387I	CCTGCAGG	1 cut(s)	504
SseBI	AGGCCT	1 cut(s)	489
SsiI	CCGC	4 cut(s)	171, 467, 942, 1280
SspDI	GGCGCC	1 cut(s)	495
SspMI	CTAG	3 cut(s)	255, 906, 1301
StuI	AGGCCT	1 cut(s)	489
StyD4I	CCNGG	1 cut(s)	968
StyI	CCWWGG	2 cut(s)	337, 879
TaaI	ACNGT	3 cut(s)	817, 897, 1109
TaiI	ACGT	2 cut(s)	751, 979
TatI	WGTACW	1 cut(s)	482
TauI	GCSGC	1 cut(s)	470
TfiI	GAWTC	8 cut(s)	306, 533, 641, 689, 711, 756, 1297, 1375
Tru1I	TTAA	2 cut(s)	149, 1001
Tru9I	TTAA	2 cut(s)	149, 1001
TscAI	CASTG	2 cut(s)	192, 964
TseFI	GTSAC	1 cut(s)	945
TseI	GCWGC	5 cut(s)	344, 611, 614, 962, 965
Tsp45I	GTSAC	1 cut(s)	945
TspGWI	ACGGA	1 cut(s)	1343
TspRI	CASTG	2 cut(s)	192, 964
VpaK11BI	GGWCC	1 cut(s)	398
XagI	CCTNNNNNAGG	1 cut(s)	503
XapI	RAATTY	4 cut(s)	5, 404, 590, 602
XbaI	TCTAGA	1 cut(s)	1300
XceI	RCATGY	2 cut(s)	389, 443
XmnI	GAANNNNTTC	1 cut(s)	1296
XspI	CTAG	3 cut(s)	255, 906, 1301
Zsp2I	ATGCAT	2 cut(s)	876, 919

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.